4IBO - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF A PUTATIVE GLUCONATE DEHYDROGENASE FROM AGROBACTERIUM TUMEFACIENS (TARGET EFI-506446)
• Keywords: PUTATIVE GLUCONATE DEHYDROGENASE, ENZYME FUNCTION INITIATIVE STRUCTURAL GENOMICS, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4IBO	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	GLUCONATE DEHYDROGENASE	A	254	1920	0
2	Protein	GLUCONATE DEHYDROGENASE	B	253	1912	0
3	Protein	GLUCONATE DEHYDROGENASE	C	253	1912	0
4	Protein	GLUCONATE DEHYDROGENASE	D	256	1934	0
5	Ligand	GLUCONATE DEHYDROGENASE	A	2	0	2
6	Ligand	GLUCONATE DEHYDROGENASE	B	1	0	1
7	Ligand	GLUCONATE DEHYDROGENASE	C	2	0	2
8	Ligand	GLUCONATE DEHYDROGENASE	D	2	0	2
9	Water			675	0	675
total				1698	7678	682

Proteins

Unit 1	ASN 3 GLN 4 ILE 5 ILE 6 PHE 7 ASP 8 LEU 9 GLY 10 GLY 11 ARG 12 THR 13 ALA 14 LEU 15 VAL 16 THR 17 GLY 18 SER 19 SER 20 ARG 21 GLY 22 LEU 23 GLY 24 ARG 25 ALA 26 MET 27 ALA 28 GLU 29 GLY 30 LEU 31 ALA 32 VAL 33 ALA 34 GLY 35 ALA 36 ARG 37 ILE 38 LEU 39 ILE 40 ASN 41 GLY 42 THR 43 ASP 44 PRO 45 SER 46 ARG 47 VAL 48 ALA 49 GLN 50 THR 51 VAL 52 GLN 53 GLU 54 PHE 55 ARG 56 ASN 57 VAL 58 GLY 59 HIS 60 ASP 61 ALA 62 GLU 63 ALA 64 VAL 65 ALA 66 PHE 67 ASP 68 VAL 69 THR 70 SER 71 GLU 72 SER 73 GLU 74 ILE 75 ILE 76 GLU 77 ALA 78 PHE 79 ALA 80 ARG 81 LEU 82 ASP 83 GLU 84 GLN 85 GLY 86 ILE 87 ASP 88 VAL 89 ASP 90 ILE 91 LEU 92 VAL 93 ASN 94 ASN 95 ALA 96 GLY 97 ILE 98 GLN 99 PHE 100 ARG 101 LYS 102 PRO 103 MET 104 ILE 105 GLU 106 LEU 107 GLU 108 THR 109 ALA 110 ASP 111 TRP 112 GLN 113 ARG 114 VAL 115 ILE 116 ASP 117 THR 118 ASN 119 LEU 120 THR 121 SER 122 ALA 123 PHE 124 MET 125 ILE 126 GLY 127 ARG 128 GLU 129 ALA 130 ALA 131 LYS 132 ARG 133 MET 134 ILE 135 PRO 136 ARG 137 GLY 138 TYR 139 GLY 140 LYS 141 ILE 142 VAL 143 ASN 144 ILE 145 GLY 146 SER 147 LEU 148 THR 149 SER 150 GLU 151 LEU 152 ALA 153 ARG 154 ALA 155 THR 156 VAL 157 ALA 158 PRO 159 TYR 160 THR 161 VAL 162 ALA 163 LYS 164 GLY 165 GLY 166 ILE 167 LYS 168 MET 169 LEU 170 THR 171 ARG 172 ALA 173 MET 174 ALA 175 ALA 176 GLU 177 TRP 178 ALA 179 GLN 180 TYR 181 GLY 182 ILE 183 GLN 184 ALA 185 ASN 186 ALA 187 ILE 188 GLY 189 PRO 190 GLY 191 TYR 192 MET 193 LEU 194 THR 195 ASP 196 MET 197 ASN 198 GLN 199 ALA 200 LEU 201 ILE 202 ASP 203 ASN 204 PRO 205 GLU 206 PHE 207 ASP 208 ALA 209 TRP 210 VAL 211 LYS 212 ALA 213 ARG 214 THR 215 PRO 216 ALA 217 LYS 218 ARG 219 TRP 220 GLY 221 LYS 222 PRO 223 GLN 224 GLU 225 LEU 226 VAL 227 GLY 228 THR 229 ALA 230 VAL 231 PHE 232 LEU 233 SER 234 ALA 235 SER 236 ALA 237 SER 238 ASP 239 TYR 240 VAL 241 ASN 242 GLY 243 GLN 244 ILE 245 ILE 246 TYR 247 VAL 248 ASP 249 GLY 250 GLY 251 MET 252 LEU 253 SER 254 VAL 255 LEU 256
Unit 2	GLN 4 ILE 5 ILE 6 PHE 7 ASP 8 LEU 9 GLY 10 GLY 11 ARG 12 THR 13 ALA 14 LEU 15 VAL 16 THR 17 GLY 18 SER 19 SER 20 ARG 21 GLY 22 LEU 23 GLY 24 ARG 25 ALA 26 MET 27 ALA 28 GLU 29 GLY 30 LEU 31 ALA 32 VAL 33 ALA 34 GLY 35 ALA 36 ARG 37 ILE 38 LEU 39 ILE 40 ASN 41 GLY 42 THR 43 ASP 44 PRO 45 SER 46 ARG 47 VAL 48 ALA 49 GLN 50 THR 51 VAL 52 GLN 53 GLU 54 PHE 55 ARG 56 ASN 57 VAL 58 GLY 59 HIS 60 ASP 61 ALA 62 GLU 63 ALA 64 VAL 65 ALA 66 PHE 67 ASP 68 VAL 69 THR 70 SER 71 GLU 72 SER 73 GLU 74 ILE 75 ILE 76 GLU 77 ALA 78 PHE 79 ALA 80 ARG 81 LEU 82 ASP 83 GLU 84 GLN 85 GLY 86 ILE 87 ASP 88 VAL 89 ASP 90 ILE 91 LEU 92 VAL 93 ASN 94 ASN 95 ALA 96 GLY 97 ILE 98 GLN 99 PHE 100 ARG 101 LYS 102 PRO 103 MET 104 ILE 105 GLU 106 LEU 107 GLU 108 THR 109 ALA 110 ASP 111 TRP 112 GLN 113 ARG 114 VAL 115 ILE 116 ASP 117 THR 118 ASN 119 LEU 120 THR 121 SER 122 ALA 123 PHE 124 MET 125 ILE 126 GLY 127 ARG 128 GLU 129 ALA 130 ALA 131 LYS 132 ARG 133 MET 134 ILE 135 PRO 136 ARG 137 GLY 138 TYR 139 GLY 140 LYS 141 ILE 142 VAL 143 ASN 144 ILE 145 GLY 146 SER 147 LEU 148 THR 149 SER 150 GLU 151 LEU 152 ALA 153 ARG 154 ALA 155 THR 156 VAL 157 ALA 158 PRO 159 TYR 160 THR 161 VAL 162 ALA 163 LYS 164 GLY 165 GLY 166 ILE 167 LYS 168 MET 169 LEU 170 THR 171 ARG 172 ALA 173 MET 174 ALA 175 ALA 176 GLU 177 TRP 178 ALA 179 GLN 180 TYR 181 GLY 182 ILE 183 GLN 184 ALA 185 ASN 186 ALA 187 ILE 188 GLY 189 PRO 190 GLY 191 TYR 192 MET 193 LEU 194 THR 195 ASP 196 MET 197 ASN 198 GLN 199 ALA 200 LEU 201 ILE 202 ASP 203 ASN 204 PRO 205 GLU 206 PHE 207 ASP 208 ALA 209 TRP 210 VAL 211 LYS 212 ALA 213 ARG 214 THR 215 PRO 216 ALA 217 LYS 218 ARG 219 TRP 220 GLY 221 LYS 222 PRO 223 GLN 224 GLU 225 LEU 226 VAL 227 GLY 228 THR 229 ALA 230 VAL 231 PHE 232 LEU 233 SER 234 ALA 235 SER 236 ALA 237 SER 238 ASP 239 TYR 240 VAL 241 ASN 242 GLY 243 GLN 244 ILE 245 ILE 246 TYR 247 VAL 248 ASP 249 GLY 250 GLY 251 MET 252 LEU 253 SER 254 VAL 255 LEU 256
Unit 3	GLN 4 ILE 5 ILE 6 PHE 7 ASP 8 LEU 9 GLY 10 GLY 11 ARG 12 THR 13 ALA 14 LEU 15 VAL 16 THR 17 GLY 18 SER 19 SER 20 ARG 21 GLY 22 LEU 23 GLY 24 ARG 25 ALA 26 MET 27 ALA 28 GLU 29 GLY 30 LEU 31 ALA 32 VAL 33 ALA 34 GLY 35 ALA 36 ARG 37 ILE 38 LEU 39 ILE 40 ASN 41 GLY 42 THR 43 ASP 44 PRO 45 SER 46 ARG 47 VAL 48 ALA 49 GLN 50 THR 51 VAL 52 GLN 53 GLU 54 PHE 55 ARG 56 ASN 57 VAL 58 GLY 59 HIS 60 ASP 61 ALA 62 GLU 63 ALA 64 VAL 65 ALA 66 PHE 67 ASP 68 VAL 69 THR 70 SER 71 GLU 72 SER 73 GLU 74 ILE 75 ILE 76 GLU 77 ALA 78 PHE 79 ALA 80 ARG 81 LEU 82 ASP 83 GLU 84 GLN 85 GLY 86 ILE 87 ASP 88 VAL 89 ASP 90 ILE 91 LEU 92 VAL 93 ASN 94 ASN 95 ALA 96 GLY 97 ILE 98 GLN 99 PHE 100 ARG 101 LYS 102 PRO 103 MET 104 ILE 105 GLU 106 LEU 107 GLU 108 THR 109 ALA 110 ASP 111 TRP 112 GLN 113 ARG 114 VAL 115 ILE 116 ASP 117 THR 118 ASN 119 LEU 120 THR 121 SER 122 ALA 123 PHE 124 MET 125 ILE 126 GLY 127 ARG 128 GLU 129 ALA 130 ALA 131 LYS 132 ARG 133 MET 134 ILE 135 PRO 136 ARG 137 GLY 138 TYR 139 GLY 140 LYS 141 ILE 142 VAL 143 ASN 144 ILE 145 GLY 146 SER 147 LEU 148 THR 149 SER 150 GLU 151 LEU 152 ALA 153 ARG 154 ALA 155 THR 156 VAL 157 ALA 158 PRO 159 TYR 160 THR 161 VAL 162 ALA 163 LYS 164 GLY 165 GLY 166 ILE 167 LYS 168 MET 169 LEU 170 THR 171 ARG 172 ALA 173 MET 174 ALA 175 ALA 176 GLU 177 TRP 178 ALA 179 GLN 180 TYR 181 GLY 182 ILE 183 GLN 184 ALA 185 ASN 186 ALA 187 ILE 188 GLY 189 PRO 190 GLY 191 TYR 192 MET 193 LEU 194 THR 195 ASP 196 MET 197 ASN 198 GLN 199 ALA 200 LEU 201 ILE 202 ASP 203 ASN 204 PRO 205 GLU 206 PHE 207 ASP 208 ALA 209 TRP 210 VAL 211 LYS 212 ALA 213 ARG 214 THR 215 PRO 216 ALA 217 LYS 218 ARG 219 TRP 220 GLY 221 LYS 222 PRO 223 GLN 224 GLU 225 LEU 226 VAL 227 GLY 228 THR 229 ALA 230 VAL 231 PHE 232 LEU 233 SER 234 ALA 235 SER 236 ALA 237 SER 238 ASP 239 TYR 240 VAL 241 ASN 242 GLY 243 GLN 244 ILE 245 ILE 246 TYR 247 VAL 248 ASP 249 GLY 250 GLY 251 MET 252 LEU 253 SER 254 VAL 255 LEU 256
Unit 4	MET 1 SER 2 ASN 3 GLN 4 ILE 5 ILE 6 PHE 7 ASP 8 LEU 9 GLY 10 GLY 11 ARG 12 THR 13 ALA 14 LEU 15 VAL 16 THR 17 GLY 18 SER 19 SER 20 ARG 21 GLY 22 LEU 23 GLY 24 ARG 25 ALA 26 MET 27 ALA 28 GLU 29 GLY 30 LEU 31 ALA 32 VAL 33 ALA 34 GLY 35 ALA 36 ARG 37 ILE 38 LEU 39 ILE 40 ASN 41 GLY 42 THR 43 ASP 44 PRO 45 SER 46 ARG 47 VAL 48 ALA 49 GLN 50 THR 51 VAL 52 GLN 53 GLU 54 PHE 55 ARG 56 ASN 57 VAL 58 GLY 59 HIS 60 ASP 61 ALA 62 GLU 63 ALA 64 VAL 65 ALA 66 PHE 67 ASP 68 VAL 69 THR 70 SER 71 GLU 72 SER 73 GLU 74 ILE 75 ILE 76 GLU 77 ALA 78 PHE 79 ALA 80 ARG 81 LEU 82 ASP 83 GLU 84 GLN 85 GLY 86 ILE 87 ASP 88 VAL 89 ASP 90 ILE 91 LEU 92 VAL 93 ASN 94 ASN 95 ALA 96 GLY 97 ILE 98 GLN 99 PHE 100 ARG 101 LYS 102 PRO 103 MET 104 ILE 105 GLU 106 LEU 107 GLU 108 THR 109 ALA 110 ASP 111 TRP 112 GLN 113 ARG 114 VAL 115 ILE 116 ASP 117 THR 118 ASN 119 LEU 120 THR 121 SER 122 ALA 123 PHE 124 MET 125 ILE 126 GLY 127 ARG 128 GLU 129 ALA 130 ALA 131 LYS 132 ARG 133 MET 134 ILE 135 PRO 136 ARG 137 GLY 138 TYR 139 GLY 140 LYS 141 ILE 142 VAL 143 ASN 144 ILE 145 GLY 146 SER 147 LEU 148 THR 149 SER 150 GLU 151 LEU 152 ALA 153 ARG 154 ALA 155 THR 156 VAL 157 ALA 158 PRO 159 TYR 160 THR 161 VAL 162 ALA 163 LYS 164 GLY 165 GLY 166 ILE 167 LYS 168 MET 169 LEU 170 THR 171 ARG 172 ALA 173 MET 174 ALA 175 ALA 176 GLU 177 TRP 178 ALA 179 GLN 180 TYR 181 GLY 182 ILE 183 GLN 184 ALA 185 ASN 186 ALA 187 ILE 188 GLY 189 PRO 190 GLY 191 TYR 192 MET 193 LEU 194 THR 195 ASP 196 MET 197 ASN 198 GLN 199 ALA 200 LEU 201 ILE 202 ASP 203 ASN 204 PRO 205 GLU 206 PHE 207 ASP 208 ALA 209 TRP 210 VAL 211 LYS 212 ALA 213 ARG 214 THR 215 PRO 216 ALA 217 LYS 218 ARG 219 TRP 220 GLY 221 LYS 222 PRO 223 GLN 224 GLU 225 LEU 226 VAL 227 GLY 228 THR 229 ALA 230 VAL 231 PHE 232 LEU 233 SER 234 ALA 235 SER 236 ALA 237 SER 238 ASP 239 TYR 240 VAL 241 ASN 242 GLY 243 GLN 244 ILE 245 ILE 246 TYR 247 VAL 248 ASP 249 GLY 250 GLY 251 MET 252 LEU 253 SER 254 VAL 255 LEU 256

Ligands

Unit 5	MG 301 CL 302
Unit 6	CL 301
Unit 7	MG 301 CL 302
Unit 8	MG 301 CL 302