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| Title | CRYSTAL STRUCTURE OF CLADE C1086 HIV-1 GP120 CORE IN COMPLEX II-121 | |
| Keywords | HIV, GP120, ENTRY INHIBITOR, DMJ-II-121, CD4-MIMETIC, VIRAL INHIBITOR COMPLEX, C1086, EXTRACELLULAR | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 4I53 | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | HIV-1 GLYCOPROTEIN | A | 336 | 2635 | 0 |
| 2 | Protein | HIV-1 GLYCOPROTEIN | B | 335 | 2627 | 0 |
| 3 | Ligand | HIV-1 GLYCOPROTEIN | A | 8 | 0 | 126 |
| 4 | Ligand | HIV-1 GLYCOPROTEIN | B | 8 | 0 | 115 |
| 5 | Water | 259 | 0 | 259 | ||
| total | 946 | 5262 | 500 |
| Unit 1 | LYS49 THR50 THR51 LEU52 PHE53 CYS54 ALA55 SER56 ASP57 ALA58 LYS59 ALA60 TYR61 GLU62 LYS63 GLU64 VAL65 HIS66 ASN67 VAL68 TRP69 ALA70 THR71 HIS72 ALA73 CYS74 VAL75 PRO76 THR77 ASP78 PRO79 ASN80 PRO81 GLN82 GLU83 MET84 VAL85 LEU86 ALA87 ASN88 VAL89 THR90 GLU91 ASN92 PHE93 ASN94 MET95 TRP96 LYS97 ASN98 ASP99 MET100 VAL101 GLU102 GLN103 MET104 HIS105 GLU106 ASP107 ILE108 ILE109 SER110 LEU111 TRP112 ASP113 GLU114 SER115 LEU116 LYS117 PRO118 CYS119 VAL120 LYS121 LEU122 THR123 GLY124 GLY198 SER199 ALA200 ILE201 THR202 GLN203 ALA204 CYS205 PRO206 LYS207 VAL208 SER209 PHE210 ASP211 PRO212 ILE213 PRO214 LEU215 HIS216 TYR217 CYS218 ALA219 PRO220 ALA221 GLY222 PHE223 ALA224 ILE225 LEU226 LYS227 CYS228 ASN229 ASN230 LYS231 THR232 PHE233 ASN234 GLY235 THR236 GLY237 PRO238 CYS239 ARG240 ASN241 VAL242 SER243 THR244 VAL245 GLN246 CYS247 THR248 HIS249 GLY250 ILE251 LYS252 PRO253 VAL254 VAL255 SER256 THR257 GLN258 LEU259 LEU260 LEU261 ASN262 GLY263 SER264 LEU265 ALA266 GLU267 GLU268 GLU269 ILE270 ILE271 ILE272 ARG273 SER274 GLU275 ASN276 LEU277 THR278 ASN279 ASN280 ALA281 LYS282 THR283 ILE284 ILE285 VAL286 HIS287 LEU288 ASN289 GLU290 SER291 VAL292 ASN293 ILE294 VAL295 CYS296 THR297 ARG298 PRO299 ASN300 ASN325 ILE326 ARG327 GLN328 ALA329 HIS330 CYS331 ASN332 ILE333 ASN334 GLU335 SER336 LYS337 TRP338 ASN339 ASN340 THR341 LEU342 GLN343 LYS344 VAL345 GLY346 GLU347 GLU348 LEU349 ALA350 LYS351 HIS352 PHE353 PRO354 SER356 LYS357 THR358 ILE359 LYS360 PHE361 GLU362 PRO363 SER364 SER365 GLY366 GLY367 ASP368 LEU369 GLU370 ILE371 THR372 THR373 HIS374 SER375 PHE376 ASN377 CYS378 ARG379 GLY380 GLU381 PHE382 PHE383 TYR384 CYS385 ASN386 THR387 SER388 ASP389 LEU390 PHE391 ASN392 GLY393 THR394 TYR395 ARG396 ASN397 GLY398 THR399 TYR403 ASN404 HIS405 THR406 GLY407 ARG408 SER409 SER410 ASN411 GLY412 THR413 ILE414 THR415 LEU416 GLN417 CYS418 LYS419 ILE420 LYS421 GLN422 ILE423 ILE424 ASN425 MET426 TRP427 GLN428 GLU429 VAL430 GLY431 ARG432 ALA433 ILE434 TYR435 ALA436 PRO437 PRO438 ILE439 GLU440 GLY441 GLU442 ILE443 THR444 CYS445 ASN446 SER447 ASN448 ILE449 THR450 GLY451 LEU452 LEU453 LEU454 LEU455 ARG456 ASP457 ASP464 THR465 GLU466 THR467 PHE468 ARG469 PRO470 GLY471 GLY472 GLY473 ASP474 MET475 ARG476 ASP477 ASN478 TRP479 ARG480 SER481 GLU482 LEU483 TYR484 LYS485 TYR486 LYS487 VAL488 VAL489 GLU490 ILE491 |
| Unit 2 | LYS49 THR50 THR51 LEU52 PHE53 CYS54 ALA55 SER56 ASP57 ALA58 LYS59 ALA60 TYR61 GLU62 LYS63 GLU64 VAL65 HIS66 ASN67 VAL68 TRP69 ALA70 THR71 HIS72 ALA73 CYS74 VAL75 PRO76 THR77 ASP78 PRO79 ASN80 PRO81 GLN82 GLU83 MET84 VAL85 LEU86 ALA87 ASN88 VAL89 THR90 GLU91 ASN92 PHE93 ASN94 MET95 TRP96 LYS97 ASN98 ASP99 MET100 VAL101 GLU102 GLN103 MET104 HIS105 GLU106 ASP107 ILE108 ILE109 SER110 LEU111 TRP112 ASP113 GLU114 SER115 LEU116 LYS117 PRO118 CYS119 VAL120 LYS121 LEU122 THR123 GLY124 GLY198 SER199 ALA200 ILE201 THR202 GLN203 ALA204 CYS205 PRO206 LYS207 VAL208 SER209 PHE210 ASP211 PRO212 ILE213 PRO214 LEU215 HIS216 TYR217 CYS218 ALA219 PRO220 ALA221 GLY222 PHE223 ALA224 ILE225 LEU226 LYS227 CYS228 ASN229 ASN230 LYS231 THR232 PHE233 ASN234 GLY235 THR236 GLY237 PRO238 CYS239 ARG240 ASN241 VAL242 SER243 THR244 VAL245 GLN246 CYS247 THR248 HIS249 GLY250 ILE251 LYS252 PRO253 VAL254 VAL255 SER256 THR257 GLN258 LEU259 LEU260 LEU261 ASN262 GLY263 SER264 LEU265 ALA266 GLU267 GLU268 GLU269 ILE270 ILE271 ILE272 ARG273 SER274 GLU275 ASN276 LEU277 THR278 ASN279 ASN280 ALA281 LYS282 THR283 ILE284 ILE285 VAL286 HIS287 LEU288 ASN289 GLU290 SER291 VAL292 ASN293 ILE294 VAL295 CYS296 THR297 ARG298 PRO299 ASN300 ASN325 ILE326 ARG327 GLN328 ALA329 HIS330 CYS331 ASN332 ILE333 ASN334 GLU335 SER336 LYS337 TRP338 ASN339 ASN340 THR341 LEU342 GLN343 LYS344 VAL345 GLY346 GLU347 GLU348 LEU349 ALA350 LYS351 HIS352 PHE353 PRO354 SER356 LYS357 THR358 ILE359 LYS360 PHE361 GLU362 PRO363 SER364 SER365 GLY366 GLY367 ASP368 LEU369 GLU370 ILE371 THR372 THR373 HIS374 SER375 PHE376 ASN377 CYS378 ARG379 GLY380 GLU381 PHE382 PHE383 TYR384 CYS385 ASN386 THR387 SER388 ASP389 LEU390 PHE391 ASN392 GLY393 THR394 TYR395 ARG396 ASN397 GLY398 THR399 TYR403 ASN404 HIS405 THR406 GLY407 ARG408 SER409 SER410 ASN411 GLY412 THR413 ILE414 THR415 LEU416 GLN417 CYS418 LYS419 ILE420 LYS421 GLN422 ILE423 ILE424 ASN425 MET426 TRP427 GLN428 GLU429 VAL430 GLY431 ARG432 ALA433 ILE434 TYR435 ALA436 PRO437 PRO438 ILE439 GLU440 GLY441 GLU442 ILE443 THR444 CYS445 ASN446 SER447 ASN448 ILE449 THR450 GLY451 LEU452 LEU453 LEU454 LEU455 ARG456 ASP457 ASP464 THR465 GLU466 THR467 PHE468 ARG469 PRO470 GLY471 GLY472 GLY473 ASP474 MET475 ARG476 ASP477 ASN478 TRP479 ARG480 SER481 GLU482 LEU483 TYR484 LYS485 TYR486 LYS487 VAL488 VAL489 GLU490 |
| Unit 3 | 1C1501 NAG502 NAG503 NAG504 NAG505 NAG506 NAG507 NAG508 |
| Unit 4 | 1C1501 FMT502 NAG503 NAG504 NAG505 NAG506 NAG507 NAG508 |
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |