4HYP - Sequence, Chains, Asymmetric and Biological Units

• Title: PYRROLOPYRIMIDINE INHIBITORS OF DNA GYRASE B AND TOPOISOMERA PART I: STRUCTURE GUIDED DISCOVERY AND OPTIMIZATION OF DUAL AGENTS WITH POTENT, BROAD-SPECTRUM ENZYMATIC ACTIVITY.
• Keywords: GYRASE, GYRB, ATP-BINDING, NUCLEOTIDE-BINDING, TOPOISOMERASE BINDING DOMAIN, ISOMERASE-ISOMERASE INHIBITOR COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4HYP	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DNA GYRASE SUBUNIT B	A	194	1498	0
2	Protein	DNA GYRASE SUBUNIT B	B	194	1498	0
3	Protein	DNA GYRASE SUBUNIT B	C	194	1498	0
4	Protein	DNA GYRASE SUBUNIT B	D	194	1498	0
5	Ligand	DNA GYRASE SUBUNIT B	A	2	0	27
6	Ligand	DNA GYRASE SUBUNIT B	B	2	0	27
7	Ligand	DNA GYRASE SUBUNIT B	C	2	0	27
8	Ligand	DNA GYRASE SUBUNIT B	D	2	0	27
9	Water			375	0	375
total				1159	5992	483

Proteins

Unit 1	GLY 15 LEU 16 ASP 17 ALA 18 VAL 19 ARG 20 LYS 21 ARG 22 PRO 23 GLY 24 MET 25 TYR 26 ILE 27 GLY 28 ASP 29 THR 30 ASP 31 ASP 32 GLY 33 THR 34 GLY 35 LEU 36 HIS 37 HIS 38 MET 39 VAL 40 PHE 41 GLU 42 VAL 43 VAL 44 ASP 45 ASN 46 ALA 47 ILE 48 ASP 49 GLU 50 ALA 51 LEU 52 ALA 53 GLY 54 HIS 55 CYS 56 LYS 57 GLU 58 ILE 59 ILE 60 VAL 61 THR 62 ILE 63 HIS 64 ALA 65 ASP 66 ASN 67 SER 68 VAL 69 SER 70 VAL 71 GLN 72 ASP 73 ASP 74 GLY 75 ARG 76 GLY 77 ILE 78 PRO 79 THR 80 GLY 81 ILE 82 VAL 88 SER 89 ALA 90 ALA 91 GLU 92 VAL 93 ILE 94 MET 95 THR 96 VAL 97 LEU 98 HIS 99 ALA 100 GLY 101 GLY 102 LYS 103 PHE 104 LYS 114 VAL 115 SER 116 GLY 117 GLY 118 LEU 119 HIS 120 GLY 121 VAL 122 GLY 123 VAL 124 SER 125 VAL 126 VAL 127 ASN 128 ALA 129 LEU 130 SER 131 GLN 132 LYS 133 LEU 134 GLU 135 LEU 136 VAL 137 ILE 138 GLN 139 ARG 140 GLU 141 GLY 142 LYS 143 ILE 144 HIS 145 ARG 146 GLN 147 ILE 148 TYR 149 GLU 150 HIS 151 GLY 152 VAL 153 PRO 154 GLN 155 ALA 156 PRO 157 LEU 158 ALA 159 VAL 160 THR 161 GLY 162 GLU 163 THR 164 GLU 165 LYS 166 THR 167 GLY 168 THR 169 MET 170 VAL 171 ARG 172 PHE 173 TRP 174 PRO 175 SER 176 LEU 177 GLU 178 THR 179 PHE 180 THR 181 ASN 182 VAL 183 THR 184 GLU 185 PHE 186 GLU 187 TYR 188 GLU 189 ILE 190 LEU 191 ALA 192 LYS 193 ARG 194 LEU 195 ARG 196 GLU 197 LEU 198 SER 199 PHE 200 LEU 201 ASN 202 SER 203 GLY 204 VAL 205 SER 206 ILE 207 ARG 208 LEU 209 ARG 210 ASP 211 LYS 212 ARG 213 ASP 214 GLY 215 LYS 216 GLU 217 ASP 218 HIS 219 PHE 220 HIS 221 TYR 222
Unit 2	GLY 15 LEU 16 ASP 17 ALA 18 VAL 19 ARG 20 LYS 21 ARG 22 PRO 23 GLY 24 MET 25 TYR 26 ILE 27 GLY 28 ASP 29 THR 30 ASP 31 ASP 32 GLY 33 THR 34 GLY 35 LEU 36 HIS 37 HIS 38 MET 39 VAL 40 PHE 41 GLU 42 VAL 43 VAL 44 ASP 45 ASN 46 ALA 47 ILE 48 ASP 49 GLU 50 ALA 51 LEU 52 ALA 53 GLY 54 HIS 55 CYS 56 LYS 57 GLU 58 ILE 59 ILE 60 VAL 61 THR 62 ILE 63 HIS 64 ALA 65 ASP 66 ASN 67 SER 68 VAL 69 SER 70 VAL 71 GLN 72 ASP 73 ASP 74 GLY 75 ARG 76 GLY 77 ILE 78 PRO 79 THR 80 GLY 81 ILE 82 VAL 88 SER 89 ALA 90 ALA 91 GLU 92 VAL 93 ILE 94 MET 95 THR 96 VAL 97 LEU 98 HIS 99 ALA 100 GLY 101 GLY 102 LYS 103 PHE 104 LYS 114 VAL 115 SER 116 GLY 117 GLY 118 LEU 119 HIS 120 GLY 121 VAL 122 GLY 123 VAL 124 SER 125 VAL 126 VAL 127 ASN 128 ALA 129 LEU 130 SER 131 GLN 132 LYS 133 LEU 134 GLU 135 LEU 136 VAL 137 ILE 138 GLN 139 ARG 140 GLU 141 GLY 142 LYS 143 ILE 144 HIS 145 ARG 146 GLN 147 ILE 148 TYR 149 GLU 150 HIS 151 GLY 152 VAL 153 PRO 154 GLN 155 ALA 156 PRO 157 LEU 158 ALA 159 VAL 160 THR 161 GLY 162 GLU 163 THR 164 GLU 165 LYS 166 THR 167 GLY 168 THR 169 MET 170 VAL 171 ARG 172 PHE 173 TRP 174 PRO 175 SER 176 LEU 177 GLU 178 THR 179 PHE 180 THR 181 ASN 182 VAL 183 THR 184 GLU 185 PHE 186 GLU 187 TYR 188 GLU 189 ILE 190 LEU 191 ALA 192 LYS 193 ARG 194 LEU 195 ARG 196 GLU 197 LEU 198 SER 199 PHE 200 LEU 201 ASN 202 SER 203 GLY 204 VAL 205 SER 206 ILE 207 ARG 208 LEU 209 ARG 210 ASP 211 LYS 212 ARG 213 ASP 214 GLY 215 LYS 216 GLU 217 ASP 218 HIS 219 PHE 220 HIS 221 TYR 222
Unit 3	GLY 15 LEU 16 ASP 17 ALA 18 VAL 19 ARG 20 LYS 21 ARG 22 PRO 23 GLY 24 MET 25 TYR 26 ILE 27 GLY 28 ASP 29 THR 30 ASP 31 ASP 32 GLY 33 THR 34 GLY 35 LEU 36 HIS 37 HIS 38 MET 39 VAL 40 PHE 41 GLU 42 VAL 43 VAL 44 ASP 45 ASN 46 ALA 47 ILE 48 ASP 49 GLU 50 ALA 51 LEU 52 ALA 53 GLY 54 HIS 55 CYS 56 LYS 57 GLU 58 ILE 59 ILE 60 VAL 61 THR 62 ILE 63 HIS 64 ALA 65 ASP 66 ASN 67 SER 68 VAL 69 SER 70 VAL 71 GLN 72 ASP 73 ASP 74 GLY 75 ARG 76 GLY 77 ILE 78 PRO 79 THR 80 GLY 81 ILE 82 VAL 88 SER 89 ALA 90 ALA 91 GLU 92 VAL 93 ILE 94 MET 95 THR 96 VAL 97 LEU 98 HIS 99 ALA 100 GLY 101 GLY 102 LYS 103 PHE 104 LYS 114 VAL 115 SER 116 GLY 117 GLY 118 LEU 119 HIS 120 GLY 121 VAL 122 GLY 123 VAL 124 SER 125 VAL 126 VAL 127 ASN 128 ALA 129 LEU 130 SER 131 GLN 132 LYS 133 LEU 134 GLU 135 LEU 136 VAL 137 ILE 138 GLN 139 ARG 140 GLU 141 GLY 142 LYS 143 ILE 144 HIS 145 ARG 146 GLN 147 ILE 148 TYR 149 GLU 150 HIS 151 GLY 152 VAL 153 PRO 154 GLN 155 ALA 156 PRO 157 LEU 158 ALA 159 VAL 160 THR 161 GLY 162 GLU 163 THR 164 GLU 165 LYS 166 THR 167 GLY 168 THR 169 MET 170 VAL 171 ARG 172 PHE 173 TRP 174 PRO 175 SER 176 LEU 177 GLU 178 THR 179 PHE 180 THR 181 ASN 182 VAL 183 THR 184 GLU 185 PHE 186 GLU 187 TYR 188 GLU 189 ILE 190 LEU 191 ALA 192 LYS 193 ARG 194 LEU 195 ARG 196 GLU 197 LEU 198 SER 199 PHE 200 LEU 201 ASN 202 SER 203 GLY 204 VAL 205 SER 206 ILE 207 ARG 208 LEU 209 ARG 210 ASP 211 LYS 212 ARG 213 ASP 214 GLY 215 LYS 216 GLU 217 ASP 218 HIS 219 PHE 220 HIS 221 TYR 222
Unit 4	GLY 15 LEU 16 ASP 17 ALA 18 VAL 19 ARG 20 LYS 21 ARG 22 PRO 23 GLY 24 MET 25 TYR 26 ILE 27 GLY 28 ASP 29 THR 30 ASP 31 ASP 32 GLY 33 THR 34 GLY 35 LEU 36 HIS 37 HIS 38 MET 39 VAL 40 PHE 41 GLU 42 VAL 43 VAL 44 ASP 45 ASN 46 ALA 47 ILE 48 ASP 49 GLU 50 ALA 51 LEU 52 ALA 53 GLY 54 HIS 55 CYS 56 LYS 57 GLU 58 ILE 59 ILE 60 VAL 61 THR 62 ILE 63 HIS 64 ALA 65 ASP 66 ASN 67 SER 68 VAL 69 SER 70 VAL 71 GLN 72 ASP 73 ASP 74 GLY 75 ARG 76 GLY 77 ILE 78 PRO 79 THR 80 GLY 81 ILE 82 VAL 88 SER 89 ALA 90 ALA 91 GLU 92 VAL 93 ILE 94 MET 95 THR 96 VAL 97 LEU 98 HIS 99 ALA 100 GLY 101 GLY 102 LYS 103 PHE 104 LYS 114 VAL 115 SER 116 GLY 117 GLY 118 LEU 119 HIS 120 GLY 121 VAL 122 GLY 123 VAL 124 SER 125 VAL 126 VAL 127 ASN 128 ALA 129 LEU 130 SER 131 GLN 132 LYS 133 LEU 134 GLU 135 LEU 136 VAL 137 ILE 138 GLN 139 ARG 140 GLU 141 GLY 142 LYS 143 ILE 144 HIS 145 ARG 146 GLN 147 ILE 148 TYR 149 GLU 150 HIS 151 GLY 152 VAL 153 PRO 154 GLN 155 ALA 156 PRO 157 LEU 158 ALA 159 VAL 160 THR 161 GLY 162 GLU 163 THR 164 GLU 165 LYS 166 THR 167 GLY 168 THR 169 MET 170 VAL 171 ARG 172 PHE 173 TRP 174 PRO 175 SER 176 LEU 177 GLU 178 THR 179 PHE 180 THR 181 ASN 182 VAL 183 THR 184 GLU 185 PHE 186 GLU 187 TYR 188 GLU 189 ILE 190 LEU 191 ALA 192 LYS 193 ARG 194 LEU 195 ARG 196 GLU 197 LEU 198 SER 199 PHE 200 LEU 201 ASN 202 SER 203 GLY 204 VAL 205 SER 206 ILE 207 ARG 208 LEU 209 ARG 210 ASP 211 LYS 212 ARG 213 ASP 214 GLY 215 LYS 216 GLU 217 ASP 218 HIS 219 PHE 220 HIS 221 TYR 222

Ligands

Unit 5	1A1 301 MG 302
Unit 6	1A1 301 MG 302
Unit 7	1A1 301 MG 302
Unit 8	1A1 301 MG 302