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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A GLYCOSYLATED BETA-1,3-GLUCANASE (HEV ALLERGEN FROM HEVEA BRASILIENSIS
Keywords ALLERGEN, GLYCOPROTEIN, GLYCOSIDE HYDROLASE, GH17 FAMILY, PATHOGENESIS-RELATED CLASS-2 PROTEIN, TIM BARREL, GLYCOSIDA HYDROLASE, CARBOHYDRATE/SUGAR BINDING, GLYCOSYLATION, PYROG ACID (N-TERMINAL RESIDUE), LATEX, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4HPG     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BETA-1,3-GLUCANASE  A 316 2469 8
2  Protein   BETA-1,3-GLUCANASE  B 316 2483 8
3  Protein   BETA-1,3-GLUCANASE  C 316 2469 8
4  Protein   BETA-1,3-GLUCANASE  D 316 2485 8
5  Ligand    E 2 0 24
6  Ligand    F 2 0 24
7  Ligand   BETA-1,3-GLUCANASE  A 1 0 7
8  Ligand   BETA-1,3-GLUCANASE  C 2 0 21
9 Water     193 0 193
total       1464 9906 301
Proteins
Unit 1 PCA1 VAL2 GLY3 VAL4 CYS5 TYR6 GLY7 MET8 GLN9 GLY10 ASN11 ASN12 LEU13 PRO14 PRO15 VAL16 SER17 GLU18 VAL19 ILE20 ALA21 LEU22 TYR23 LYS24 LYS25 SER26 ASN27 ILE28 THR29 ARG30 MET31 ARG32 ILE33 TYR34 ASP35 PRO36 ASN37 GLN38 ALA39 VAL40 LEU41 GLU42 ALA43 LEU44 ARG45 GLY46 SER47 ASN48 ILE49 GLU50 LEU51 ILE52 LEU53 GLY54 VAL55 PRO56 ASN57 SER58 ASP59 LEU60 GLN61 SER62 LEU63 THR64 ASN65 PRO66 SER67 ASN68 ALA69 LYS70 SER71 TRP72 VAL73 GLN74 LYS75 ASN76 VAL77 ARG78 GLY79 PHE80 TRP81 SER82 SER83 VAL84 ARG85 PHE86 ARG87 TYR88 ILE89 ALA90 VAL91 GLY92 ASN93 GLU94 ILE95 SER96 PRO97 VAL98 ASN99 ARG100 GLY101 THR102 ALA103 TRP104 LEU105 ALA106 GLN107 PHE108 VAL109 LEU110 PRO111 ALA112 MET113 ARG114 ASN115 ILE116 HIS117 ASP118 ALA119 ILE120 ARG121 SER122 ALA123 GLY124 LEU125 GLN126 ASP127 GLN128 ILE129 LYS130 VAL131 SER132 THR133 ALA134 ILE135 ASP136 LEU137 THR138 LEU139 VAL140 GLY141 ASN142 SER143 TYR144 PRO145 PRO146 SER147 ALA148 GLY149 ALA150 PHE151 ARG152 ASP153 ASP154 VAL155 ARG156 SER157 TYR158 LEU159 ASN160 PRO161 ILE162 ILE163 ARG164 PHE165 LEU166 SER167 SER168 ILE169 ARG170 SER171 PRO172 LEU173 LEU174 ALA175 ASN176 ILE177 TYR178 PRO179 TYR180 PHE181 THR182 TYR183 ALA184 GLY185 ASN186 PRO187 ARG188 ASP189 ILE190 SER191 LEU192 PRO193 TYR194 ALA195 LEU196 PHE197 THR198 SER199 PRO200 SER201 VAL202 VAL203 VAL204 TRP205 ASP206 GLY207 GLN208 ARG209 GLY210 TYR211 LYS212 ASN213 LEU214 PHE215 ASP216 ALA217 THR218 LEU219 ASP220 ALA221 LEU222 TYR223 SER224 ALA225 LEU226 GLU227 ARG228 ALA229 SER230 GLY231 GLY232 SER233 LEU234 GLU235 VAL236 VAL237 VAL238 SER239 GLU240 SER241 GLY242 TRP243 PRO244 SER245 ALA246 GLY247 ALA248 PHE249 ALA250 ALA251 THR252 PHE253 ASP254 ASN255 GLY256 ARG257 THR258 TYR259 LEU260 SER261 ASN262 LEU263 ILE264 GLN265 HIS266 VAL267 LYS268 ARG269 GLY270 THR271 PRO272 LYS273 ARG274 PRO275 LYS276 ARG277 ALA278 ILE279 GLU280 THR281 TYR282 LEU283 PHE284 ALA285 MET286 PHE287 ASP288 GLU289 ASN290 LYS291 LYS292 GLN293 PRO294 GLU295 VAL296 GLU297 LYS298 HIS299 PHE300 GLY301 LEU302 PHE303 PHE304 PRO305 ASN306 LYS307 TRP308 GLN309 LYS310 TYR311 ASN312 LEU313 ASN314 PHE315 SER316
Unit 2 PCA1 VAL2 GLY3 VAL4 CYS5 TYR6 GLY7 MET8 GLN9 GLY10 ASN11 ASN12 LEU13 PRO14 PRO15 VAL16 SER17 GLU18 VAL19 ILE20 ALA21 LEU22 TYR23 LYS24 LYS25 SER26 ASN27 ILE28 THR29 ARG30 MET31 ARG32 ILE33 TYR34 ASP35 PRO36 ASN37 GLN38 ALA39 VAL40 LEU41 GLU42 ALA43 LEU44 ARG45 GLY46 SER47 ASN48 ILE49 GLU50 LEU51 ILE52 LEU53 GLY54 VAL55 PRO56 ASN57 SER58 ASP59 LEU60 GLN61 SER62 LEU63 THR64 ASN65 PRO66 SER67 ASN68 ALA69 LYS70 SER71 TRP72 VAL73 GLN74 LYS75 ASN76 VAL77 ARG78 GLY79 PHE80 TRP81 SER82 SER83 VAL84 ARG85 PHE86 ARG87 TYR88 ILE89 ALA90 VAL91 GLY92 ASN93 GLU94 ILE95 SER96 PRO97 VAL98 ASN99 ARG100 GLY101 THR102 ALA103 TRP104 LEU105 ALA106 GLN107 PHE108 VAL109 LEU110 PRO111 ALA112 MET113 ARG114 ASN115 ILE116 HIS117 ASP118 ALA119 ILE120 ARG121 SER122 ALA123 GLY124 LEU125 GLN126 ASP127 GLN128 ILE129 LYS130 VAL131 SER132 THR133 ALA134 ILE135 ASP136 LEU137 THR138 LEU139 VAL140 GLY141 ASN142 SER143 TYR144 PRO145 PRO146 SER147 ALA148 GLY149 ALA150 PHE151 ARG152 ASP153 ASP154 VAL155 ARG156 SER157 TYR158 LEU159 ASN160 PRO161 ILE162 ILE163 ARG164 PHE165 LEU166 SER167 SER168 ILE169 ARG170 SER171 PRO172 LEU173 LEU174 ALA175 ASN176 ILE177 TYR178 PRO179 TYR180 PHE181 THR182 TYR183 ALA184 GLY185 ASN186 PRO187 ARG188 ASP189 ILE190 SER191 LEU192 PRO193 TYR194 ALA195 LEU196 PHE197 THR198 SER199 PRO200 SER201 VAL202 VAL203 VAL204 TRP205 ASP206 GLY207 GLN208 ARG209 GLY210 TYR211 LYS212 ASN213 LEU214 PHE215 ASP216 ALA217 THR218 LEU219 ASP220 ALA221 LEU222 TYR223 SER224 ALA225 LEU226 GLU227 ARG228 ALA229 SER230 GLY231 GLY232 SER233 LEU234 GLU235 VAL236 VAL237 VAL238 SER239 GLU240 SER241 GLY242 TRP243 PRO244 SER245 ALA246 GLY247 ALA248 PHE249 ALA250 ALA251 THR252 PHE253 ASP254 ASN255 GLY256 ARG257 THR258 TYR259 LEU260 SER261 ASN262 LEU263 ILE264 GLN265 HIS266 VAL267 LYS268 ARG269 GLY270 THR271 PRO272 LYS273 ARG274 PRO275 LYS276 ARG277 ALA278 ILE279 GLU280 THR281 TYR282 LEU283 PHE284 ALA285 MET286 PHE287 ASP288 GLU289 ASN290 LYS291 LYS292 GLN293 PRO294 GLU295 VAL296 GLU297 LYS298 HIS299 PHE300 GLY301 LEU302 PHE303 PHE304 PRO305 ASN306 LYS307 TRP308 GLN309 LYS310 TYR311 ASN312 LEU313 ASN314 PHE315 SER316
Unit 3 PCA1 VAL2 GLY3 VAL4 CYS5 TYR6 GLY7 MET8 GLN9 GLY10 ASN11 ASN12 LEU13 PRO14 PRO15 VAL16 SER17 GLU18 VAL19 ILE20 ALA21 LEU22 TYR23 LYS24 LYS25 SER26 ASN27 ILE28 THR29 ARG30 MET31 ARG32 ILE33 TYR34 ASP35 PRO36 ASN37 GLN38 ALA39 VAL40 LEU41 GLU42 ALA43 LEU44 ARG45 GLY46 SER47 ASN48 ILE49 GLU50 LEU51 ILE52 LEU53 GLY54 VAL55 PRO56 ASN57 SER58 ASP59 LEU60 GLN61 SER62 LEU63 THR64 ASN65 PRO66 SER67 ASN68 ALA69 LYS70 SER71 TRP72 VAL73 GLN74 LYS75 ASN76 VAL77 ARG78 GLY79 PHE80 TRP81 SER82 SER83 VAL84 ARG85 PHE86 ARG87 TYR88 ILE89 ALA90 VAL91 GLY92 ASN93 GLU94 ILE95 SER96 PRO97 VAL98 ASN99 ARG100 GLY101 THR102 ALA103 TRP104 LEU105 ALA106 GLN107 PHE108 VAL109 LEU110 PRO111 ALA112 MET113 ARG114 ASN115 ILE116 HIS117 ASP118 ALA119 ILE120 ARG121 SER122 ALA123 GLY124 LEU125 GLN126 ASP127 GLN128 ILE129 LYS130 VAL131 SER132 THR133 ALA134 ILE135 ASP136 LEU137 THR138 LEU139 VAL140 GLY141 ASN142 SER143 TYR144 PRO145 PRO146 SER147 ALA148 GLY149 ALA150 PHE151 ARG152 ASP153 ASP154 VAL155 ARG156 SER157 TYR158 LEU159 ASN160 PRO161 ILE162 ILE163 ARG164 PHE165 LEU166 SER167 SER168 ILE169 ARG170 SER171 PRO172 LEU173 LEU174 ALA175 ASN176 ILE177 TYR178 PRO179 TYR180 PHE181 THR182 TYR183 ALA184 GLY185 ASN186 PRO187 ARG188 ASP189 ILE190 SER191 LEU192 PRO193 TYR194 ALA195 LEU196 PHE197 THR198 SER199 PRO200 SER201 VAL202 VAL203 VAL204 TRP205 ASP206 GLY207 GLN208 ARG209 GLY210 TYR211 LYS212 ASN213 LEU214 PHE215 ASP216 ALA217 THR218 LEU219 ASP220 ALA221 LEU222 TYR223 SER224 ALA225 LEU226 GLU227 ARG228 ALA229 SER230 GLY231 GLY232 SER233 LEU234 GLU235 VAL236 VAL237 VAL238 SER239 GLU240 SER241 GLY242 TRP243 PRO244 SER245 ALA246 GLY247 ALA248 PHE249 ALA250 ALA251 THR252 PHE253 ASP254 ASN255 GLY256 ARG257 THR258 TYR259 LEU260 SER261 ASN262 LEU263 ILE264 GLN265 HIS266 VAL267 LYS268 ARG269 GLY270 THR271 PRO272 LYS273 ARG274 PRO275 LYS276 ARG277 ALA278 ILE279 GLU280 THR281 TYR282 LEU283 PHE284 ALA285 MET286 PHE287 ASP288 GLU289 ASN290 LYS291 LYS292 GLN293 PRO294 GLU295 VAL296 GLU297 LYS298 HIS299 PHE300 GLY301 LEU302 PHE303 PHE304 PRO305 ASN306 LYS307 TRP308 GLN309 LYS310 TYR311 ASN312 LEU313 ASN314 PHE315 SER316
Unit 4 PCA1 VAL2 GLY3 VAL4 CYS5 TYR6 GLY7 MET8 GLN9 GLY10 ASN11 ASN12 LEU13 PRO14 PRO15 VAL16 SER17 GLU18 VAL19 ILE20 ALA21 LEU22 TYR23 LYS24 LYS25 SER26 ASN27 ILE28 THR29 ARG30 MET31 ARG32 ILE33 TYR34 ASP35 PRO36 ASN37 GLN38 ALA39 VAL40 LEU41 GLU42 ALA43 LEU44 ARG45 GLY46 SER47 ASN48 ILE49 GLU50 LEU51 ILE52 LEU53 GLY54 VAL55 PRO56 ASN57 SER58 ASP59 LEU60 GLN61 SER62 LEU63 THR64 ASN65 PRO66 SER67 ASN68 ALA69 LYS70 SER71 TRP72 VAL73 GLN74 LYS75 ASN76 VAL77 ARG78 GLY79 PHE80 TRP81 SER82 SER83 VAL84 ARG85 PHE86 ARG87 TYR88 ILE89 ALA90 VAL91 GLY92 ASN93 GLU94 ILE95 SER96 PRO97 VAL98 ASN99 ARG100 GLY101 THR102 ALA103 TRP104 LEU105 ALA106 GLN107 PHE108 VAL109 LEU110 PRO111 ALA112 MET113 ARG114 ASN115 ILE116 HIS117 ASP118 ALA119 ILE120 ARG121 SER122 ALA123 GLY124 LEU125 GLN126 ASP127 GLN128 ILE129 LYS130 VAL131 SER132 THR133 ALA134 ILE135 ASP136 LEU137 THR138 LEU139 VAL140 GLY141 ASN142 SER143 TYR144 PRO145 PRO146 SER147 ALA148 GLY149 ALA150 PHE151 ARG152 ASP153 ASP154 VAL155 ARG156 SER157 TYR158 LEU159 ASN160 PRO161 ILE162 ILE163 ARG164 PHE165 LEU166 SER167 SER168 ILE169 ARG170 SER171 PRO172 LEU173 LEU174 ALA175 ASN176 ILE177 TYR178 PRO179 TYR180 PHE181 THR182 TYR183 ALA184 GLY185 ASN186 PRO187 ARG188 ASP189 ILE190 SER191 LEU192 PRO193 TYR194 ALA195 LEU196 PHE197 THR198 SER199 PRO200 SER201 VAL202 VAL203 VAL204 TRP205 ASP206 GLY207 GLN208 ARG209 GLY210 TYR211 LYS212 ASN213 LEU214 PHE215 ASP216 ALA217 THR218 LEU219 ASP220 ALA221 LEU222 TYR223 SER224 ALA225 LEU226 GLU227 ARG228 ALA229 SER230 GLY231 GLY232 SER233 LEU234 GLU235 VAL236 VAL237 VAL238 SER239 GLU240 SER241 GLY242 TRP243 PRO244 SER245 ALA246 GLY247 ALA248 PHE249 ALA250 ALA251 THR252 PHE253 ASP254 ASN255 GLY256 ARG257 THR258 TYR259 LEU260 SER261 ASN262 LEU263 ILE264 GLN265 HIS266 VAL267 LYS268 ARG269 GLY270 THR271 PRO272 LYS273 ARG274 PRO275 LYS276 ARG277 ALA278 ILE279 GLU280 THR281 TYR282 LEU283 PHE284 ALA285 MET286 PHE287 ASP288 GLU289 ASN290 LYS291 LYS292 GLN293 PRO294 GLU295 VAL296 GLU297 LYS298 HIS299 PHE300 GLY301 LEU302 PHE303 PHE304 PRO305 ASN306 LYS307 TRP308 GLN309 LYS310 TYR311 ASN312 LEU313 ASN314 PHE315 SER316
Ligands
Unit 5 NAG1 FUC2
Unit 6 NAG1 FUC2
Unit 7 PEG401
Unit 8 NAG403 PEG404
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany