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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL BASIS FOR RECRUITMENT AND ACTIVATION OF THE AP-1 ADAPTOR COMPLEX BY ARF1
Keywords PROTEIN TRANSPORT, PROTEIN TRAFFICKING, ARF1 GTPASE ACTIVATI GTPASE BINDING, TRANS-GOLGI MEMBRANE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4HMY     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   AP-1 COMPLEX SUBUNIT GAMMA-1  A 579 4583 0
2  Protein   AP-1 COMPLEX SUBUNIT BETA-1  B 563 4458 0
3  Protein   AP-1 COMPLEX SUBUNIT MU-1  M 383 3119 0
4  Protein   AP-1 COMPLEX SUBUNIT SIGMA-3  S 145 1219 0
5  Protein   ADP-RIBOSYLATION FACTOR 1  C 165 1331 0
6  Ligand   ADP-RIBOSYLATION FACTOR 1  C 2 0 33
total       1837 14710 33
Proteins
Unit 1 LEU7 ARG8 GLU9 LEU10 ILE11 ARG12 THR13 ILE14 ARG15 THR16 ALA17 ARG18 THR19 GLN20 ALA21 GLU22 GLU23 ARG24 GLU25 MET26 ILE27 GLN28 LYS29 GLU30 CYS31 ALA32 ALA33 ILE34 ARG35 SER36 SER37 PHE38 ARG39 GLU40 GLU41 ASP42 ASN43 THR44 TYR45 ARG46 CYS47 ARG48 ASN49 VAL50 ALA51 LYS52 LEU53 LEU54 TYR55 MET56 HIS57 MET58 LEU59 GLY60 TYR61 PRO62 ALA63 HIS64 PHE65 GLY66 GLN67 LEU68 GLU69 CYS70 LEU71 LYS72 LEU73 ILE74 ALA75 SER76 GLN77 LYS78 PHE79 THR80 ASP81 LYS82 ARG83 ILE84 GLY85 TYR86 LEU87 GLY88 ALA89 MET90 LEU91 LEU92 LEU93 ASP94 GLU95 ARG96 GLN97 ASP98 VAL99 HIS100 LEU101 LEU102 MET103 THR104 ASN105 CYS106 ILE107 LYS108 ASN109 ASP110 LEU111 ASN112 HIS113 SER114 THR115 GLN116 PHE117 VAL118 GLN119 GLY120 LEU121 ALA122 LEU123 CYS124 THR125 LEU126 GLY127 CYS128 MET129 GLY130 SER131 SER132 GLU133 MET134 CYS135 ARG136 ASP137 LEU138 ALA139 GLY140 GLU141 VAL142 GLU143 LYS144 LEU145 LEU146 LYS147 THR148 SER149 ASN150 SER151 TYR152 LEU153 ARG154 LYS155 LYS156 ALA157 ALA158 LEU159 CYS160 ALA161 VAL162 HIS163 VAL164 ILE165 ARG166 LYS167 VAL168 PRO169 GLU170 LEU171 MET172 GLU173 MET174 PHE175 LEU176 PRO177 ALA178 THR179 LYS180 ASN181 LEU182 LEU183 ASN184 GLU185 LYS186 ASN187 HIS188 GLY189 VAL190 LEU191 HIS192 THR193 SER194 VAL195 VAL196 LEU197 LEU198 THR199 GLU200 MET201 CYS202 GLU203 ARG204 SER205 PRO206 ASP207 MET208 LEU209 ALA210 HIS211 PHE212 ARG213 LYS214 LEU215 VAL216 PRO217 GLN218 LEU219 VAL220 ARG221 ILE222 LEU223 LYS224 ASN225 LEU226 ILE227 MET228 SER229 GLY230 TYR231 SER232 PRO233 GLU234 HIS235 ASP236 VAL237 SER238 GLY239 ILE240 SER241 ASP242 PRO243 PHE244 LEU245 GLN246 VAL247 ARG248 ILE249 LEU250 ARG251 LEU252 LEU253 ARG254 ILE255 LEU256 GLY257 ARG258 ASN259 ASP260 ASP261 ASP262 SER263 SER264 GLU265 ALA266 MET267 ASN268 ASP269 ILE270 LEU271 ALA272 GLN273 VAL274 ALA275 THR276 ASN277 THR278 GLU279 THR280 SER281 LYS282 ASN283 VAL284 GLY285 ASN286 ALA287 ILE288 LEU289 TYR290 GLU291 THR292 VAL293 LEU294 THR295 ILE296 MET297 ASP298 ILE299 LYS300 SER301 GLU302 SER303 GLY304 LEU305 ARG306 VAL307 LEU308 ALA309 ILE310 ASN311 ILE312 LEU313 GLY314 ARG315 PHE316 LEU317 LEU318 ASN319 ASN320 ASP321 LYS322 ASN323 ILE324 ARG325 TYR326 VAL327 ALA328 LEU329 THR330 SER331 LEU332 LEU333 LYS334 THR335 VAL336 GLN337 THR338 ASP339 HIS340 ASN341 ALA342 VAL343 GLN344 ARG345 HIS346 ARG347 SER348 THR349 ILE350 VAL351 ASP352 CYS353 LEU354 LYS355 ASP356 LEU357 ASP358 VAL359 SER360 ILE361 LYS362 ARG363 ARG364 ALA365 MET366 GLU367 LEU368 SER369 PHE370 ALA371 LEU372 VAL373 ASN374 GLY375 ASN376 ASN377 ILE378 ARG379 GLY380 MET381 MET382 LYS383 GLU384 LEU385 LEU386 TYR387 PHE388 LEU389 ASP390 SER391 CYS392 GLU393 PRO394 GLU395 PHE396 LYS397 ALA398 ASP399 CYS400 ALA401 SER402 GLY403 ILE404 PHE405 LEU406 ALA407 ALA408 GLU409 LYS410 TYR411 ALA412 PRO413 SER414 LYS415 ARG416 TRP417 HIS418 ILE419 ASP420 THR421 ILE422 MET423 ARG424 VAL425 LEU426 THR427 THR428 ALA429 GLY430 SER431 TYR432 VAL433 ARG434 ASP435 ASP436 ALA437 VAL438 PRO439 ASN440 LEU441 ILE442 GLN443 LEU444 ILE445 THR446 ASN447 SER448 VAL449 GLU450 MET451 HIS452 ALA453 TYR454 THR455 VAL456 GLN457 ARG458 LEU459 TYR460 LYS461 ALA462 ILE463 LEU464 GLY465 ASP466 TYR467 SER468 GLN469 GLN470 PRO471 LEU472 VAL473 GLN474 VAL475 ALA476 ALA477 TRP478 CYS479 ILE480 GLY481 GLU482 TYR483 GLY484 ASP485 LEU486 LEU487 VAL488 SER489 GLY490 GLN491 CYS492 GLU493 GLU494 GLU495 GLU496 PRO497 ILE498 GLN499 VAL500 THR501 GLU502 ASP503 GLU504 VAL505 LEU506 ASP507 ILE508 LEU509 GLU510 SER511 VAL512 LEU513 ILE514 SER515 ASN516 MET517 SER518 THR519 SER520 VAL521 THR522 ARG523 GLY524 TYR525 ALA526 LEU527 THR528 ALA529 ILE530 MET531 LYS532 LEU533 SER534 THR535 ARG536 PHE537 THR538 CYS539 THR540 VAL541 ASN542 ARG543 ILE544 LYS545 LYS546 VAL547 VAL548 SER549 ILE550 TYR551 GLY552 SER553 SER554 ILE555 ASP556 VAL557 GLU558 LEU559 GLN560 GLN561 ARG562 ALA563 VAL564 GLU565 TYR566 ASN567 ALA568 LEU569 PHE570 LYS571 LYS572 TYR573 ASP574 HIS575 MET576 ARG577 SER578 ALA579 LEU580 LEU581 GLU582 ARG583 MET584 PRO585
Unit 2 LYS12 GLY13 GLU14 ILE15 PHE16 GLU17 LEU18 LYS19 ALA20 GLU21 LEU22 ASN23 SER24 ASP25 LYS26 LYS27 GLU28 LYS29 LYS30 LYS31 GLU32 ALA33 VAL34 LYS35 LYS36 VAL37 ILE38 ALA39 SER40 MET41 THR42 VAL43 GLY44 LYS45 ASP46 VAL47 SER48 ALA49 LEU50 PHE51 PRO52 ASP53 VAL54 VAL55 ASN56 CYS57 MET58 GLN59 THR60 ASP61 ASN62 LEU63 GLU64 LEU65 LYS66 LYS67 LEU68 VAL69 TYR70 LEU71 TYR72 LEU73 MET74 ASN75 TYR76 ALA77 LYS78 SER79 GLN80 PRO81 ASP82 MET83 ALA84 ILE85 MET86 ALA87 VAL88 ASN89 THR90 PHE91 VAL92 LYS93 ASP94 CYS95 GLU96 ASP97 PRO98 ASN99 PRO100 LEU101 ILE102 ARG103 ALA104 LEU105 ALA106 VAL107 ARG108 THR109 MET110 GLY111 CYS112 ILE113 ARG114 VAL115 ASP116 LYS117 ILE118 THR119 GLU120 TYR121 LEU122 CYS123 GLU124 PRO125 LEU126 ARG127 LYS128 CYS129 LEU130 LYS131 ASP132 GLU133 ASP134 PRO135 TYR136 VAL137 ARG138 LYS139 THR140 ALA141 ALA142 VAL143 CYS144 VAL145 ALA146 LYS147 LEU148 HIS149 ASP150 ILE151 ASN152 ALA153 GLN154 LEU155 VAL156 GLU157 ASP158 GLN159 GLY160 PHE161 LEU162 ASP163 THR164 LEU165 LYS166 ASP167 LEU168 ILE169 SER170 ASP171 SER172 ASN173 PRO174 MET175 VAL176 VAL177 ALA178 ASN179 ALA180 VAL181 ALA182 ALA183 LEU184 SER185 GLU186 ILE187 ALA188 GLU189 SER190 HIS191 PRO192 SER193 SER194 ASN195 LEU196 LEU197 ASP198 LEU199 ASN200 PRO201 GLN202 SER203 ILE204 ASN205 LYS206 LEU207 LEU208 THR209 ALA210 LEU211 ASN212 GLU213 CYS214 THR215 GLU216 TRP217 GLY218 GLN219 ILE220 PHE221 ILE222 LEU223 ASP224 CYS225 LEU226 ALA227 ASN228 TYR229 MET230 PRO231 LYS232 ASP233 ASP234 ARG235 GLU236 ALA237 GLN238 SER239 ILE240 CYS241 GLU242 ARG243 VAL244 THR245 PRO246 ARG247 LEU248 SER249 HIS250 ALA251 ASN252 SER253 ALA254 VAL255 VAL256 LEU257 SER258 ALA259 VAL260 LYS261 VAL262 LEU263 MET264 LYS265 PHE266 MET267 GLU268 MET269 LEU270 SER271 LYS272 ASP273 LEU274 ASP275 TYR276 TYR277 GLY278 THR279 LEU280 LEU281 LYS282 LYS283 LEU284 ALA285 PRO286 PRO287 LEU288 VAL289 THR290 LEU291 LEU292 SER293 ALA294 GLU295 PRO296 GLU297 LEU298 GLN299 TYR300 VAL301 ALA302 LEU303 ARG304 ASN305 ILE306 ASN307 LEU308 ILE309 VAL310 GLN311 LYS312 ARG313 PRO314 GLU315 ILE316 LEU317 LYS318 HIS319 GLU320 MET321 LYS322 VAL323 PHE324 PHE325 VAL326 LYS327 TYR328 ASN329 ASP330 PRO331 ILE332 TYR333 VAL334 LYS335 LEU336 GLU337 LYS338 LEU339 ASP340 ILE341 MET342 ILE343 ARG344 LEU345 ALA346 SER347 GLN348 ALA349 ASN350 ILE351 ALA352 GLN353 VAL354 LEU355 ALA356 GLU357 LEU358 ARG359 GLU360 TYR361 ALA362 THR363 GLU364 VAL365 ASP366 VAL367 ASP368 PHE369 VAL370 ARG371 LYS372 ALA373 VAL374 ARG375 ALA376 ILE377 GLY378 ARG379 CYS380 ALA381 ILE382 LYS383 VAL384 GLU385 GLN386 SER387 ALA388 GLU389 ARG390 CYS391 VAL392 SER393 THR394 LEU395 LEU396 ASP397 LEU398 ILE399 GLN400 THR401 LYS402 VAL403 ASN404 TYR405 VAL406 VAL407 GLN408 GLU409 ALA410 ILE411 VAL412 VAL413 ILE414 LYS415 ASP416 ILE417 PHE418 ARG419 LYS420 TYR421 PRO422 ASN423 LYS424 TYR425 GLU426 SER427 VAL428 ILE429 ALA430 THR431 LEU432 CYS433 GLU434 ASN435 LEU436 ASP437 SER438 LEU439 ASP440 GLU441 PRO442 GLU443 ALA444 ARG445 ALA446 ALA447 MET448 ILE449 TRP450 ILE451 VAL452 GLY453 GLU454 TYR455 ALA456 GLU457 ARG458 ILE459 ASP460 ASN461 ALA462 ASP463 GLU464 LEU465 LEU466 GLU467 SER468 PHE469 LEU470 GLU471 GLY472 PHE473 HIS474 ASP475 LYS476 SER477 THR478 GLN479 VAL480 GLN481 LEU482 GLN483 LEU484 LEU485 THR486 ALA487 PHE488 VAL489 LYS490 LEU491 PHE492 LEU493 LYS494 LYS495 PRO496 THR497 GLU498 THR499 GLN500 GLU501 LEU502 VAL503 GLN504 GLN505 VAL506 LEU507 SER508 LEU509 ALA510 THR511 GLN512 ASP513 SER514 ASP515 ASN516 PRO517 ASP518 LEU519 ARG520 ASP521 ARG522 GLY523 TYR524 ILE525 TYR526 TRP527 ARG528 LEU529 LEU530 SER531 THR532 ASP533 PRO534 VAL535 ALA536 ALA537 LYS538 GLU539 VAL540 VAL541 LEU542 ALA543 GLU544 LYS545 PRO546 LEU547 ILE548 SER549 GLU550 GLU551 THR552 ASP553 LEU554 ILE555 GLU556 PRO557 THR558 LEU559 LEU560 ASP561 GLU562 LEU563 ILE564 CYS565 TYR566 ILE567 GLY568 THR569 LEU570 ALA571 SER572 VAL573 TYR574
Unit 3 SER2 ALA3 SER4 ALA5 VAL6 TYR7 VAL8 LEU9 ASP10 LEU11 LYS12 GLY13 LYS14 VAL15 LEU16 ILE17 CYS18 ARG19 ASN20 TYR21 ARG22 GLY23 ASP24 VAL25 ASP26 MET27 SER28 GLU29 VAL30 GLU31 HIS32 PHE33 MET34 PRO35 ILE36 LEU37 MET38 GLU39 LYS40 GLU41 GLU42 GLU43 GLY44 MET45 LEU46 SER47 PRO48 ILE49 LEU50 ALA51 HIS52 GLY53 GLY54 VAL55 ARG56 PHE57 MET58 TRP59 ILE60 LYS61 HIS62 ASN63 ASN64 LEU65 TYR66 LEU67 VAL68 ALA69 THR70 SER71 LYS72 LYS73 ASN74 ALA75 CYS76 VAL77 SER78 LEU79 VAL80 PHE81 SER82 PHE83 LEU84 TYR85 LYS86 VAL87 VAL88 GLN89 VAL90 PHE91 SER92 GLU93 TYR94 PHE95 LYS96 GLU97 LEU98 GLU99 GLU100 GLU101 SER102 ILE103 ARG104 ASP105 ASN106 PHE107 VAL108 ILE109 ILE110 TYR111 GLU112 LEU113 LEU114 ASP115 GLU116 LEU117 MET118 ASP119 PHE120 GLY121 TYR122 PRO123 GLN124 THR125 THR126 ASP127 SER128 LYS129 ILE130 LEU131 GLN132 GLU133 TYR134 ARG148 PRO149 PRO150 ALA151 THR152 VAL153 THR154 ASN155 ALA156 VAL157 SER158 TRP159 ARG160 SER161 GLU162 GLY163 ILE164 LYS165 TYR166 ARG167 LYS168 ASN169 GLU170 VAL171 PHE172 LEU173 ASP174 VAL175 ILE176 GLU177 ALA178 VAL179 ASN180 LEU181 LEU182 VAL183 SER184 ALA185 ASN186 GLY187 ASN188 VAL189 LEU190 ARG191 SER192 GLU193 ILE194 VAL195 GLY196 SER197 ILE198 LYS199 MET200 ARG201 VAL202 PHE203 LEU204 SER205 GLY206 MET207 PRO208 GLU209 LEU210 ARG211 LEU212 GLY213 LEU214 ASN215 ASP216 VAL231 GLU232 LEU233 GLU234 ASP235 VAL236 LYS237 PHE238 HIS239 GLN240 CYS241 VAL242 ARG243 LEU244 SER245 ARG246 PHE247 GLU248 ASN249 ASP250 ARG251 THR252 ILE253 SER254 PHE255 ILE256 PRO257 PRO258 ASP259 GLY260 GLU261 PHE262 GLU263 LEU264 MET265 SER266 TYR267 ARG268 LEU269 ASN270 THR271 HIS272 VAL273 LYS274 PRO275 LEU276 ILE277 TRP278 ILE279 GLU280 SER281 VAL282 ILE283 GLU284 LYS285 HIS286 SER287 HIS288 SER289 ARG290 ILE291 GLU292 TYR293 MET294 VAL295 LYS296 ALA297 LYS298 SER299 GLN300 PHE301 LYS302 ARG303 ARG304 SER305 THR306 ALA307 ASN308 ASN309 VAL310 GLU311 ILE312 HIS313 ILE314 PRO315 VAL316 PRO317 ASN318 ASP319 ALA320 ASP321 SER322 PRO323 LYS324 PHE325 LYS326 THR327 THR328 VAL329 GLY330 SER331 VAL332 LYS333 TRP334 VAL335 PRO336 GLU337 ASN338 SER339 GLU340 ILE341 VAL342 TRP343 SER344 VAL345 LYS346 SER347 PHE348 PRO349 GLY350 GLY351 LYS352 GLU353 TYR354 LEU355 MET356 ARG357 ALA358 HIS359 PHE360 GLY361 LEU362 PRO374 PRO375 ILE376 SER377 VAL378 LYS379 PHE380 GLU381 ILE382 PRO383 TYR384 PHE385 THR386 THR387 SER388 GLY389 ILE390 GLN391 VAL392 ARG393 TYR394 LEU395 LYS396 ILE397 ILE398 GLU399 LYS400 SER401 GLY402 TYR403 GLN404 ALA405 LEU406 PRO407 TRP408 VAL409 ARG410 TYR411 ILE412 THR413 GLN414 ASN415 GLY416 ASP417 TYR418 GLN419 LEU420 ARG421 THR422
Unit 4 MET1 ILE2 HIS3 PHE4 ILE5 LEU6 LEU7 PHE8 SER9 ARG10 GLN11 GLY12 LYS13 LEU14 ARG15 LEU16 GLN17 LYS18 TRP19 TYR20 ILE21 THR22 LEU23 PRO24 ASP25 LYS26 GLU27 ARG28 LYS29 LYS30 ILE31 THR32 ARG33 GLU34 ILE35 VAL36 GLN37 ILE38 ILE39 LEU40 SER41 ARG42 GLY43 HIS44 ARG45 THR46 SER47 SER48 PHE49 VAL50 ASP51 TRP52 LYS53 GLU54 LEU55 LYS56 LEU57 VAL58 TYR59 LYS60 ARG61 TYR62 ALA63 SER64 LEU65 TYR66 PHE67 CYS68 CYS69 ALA70 ILE71 GLU72 ASN73 GLN74 ASP75 ASN76 GLU77 LEU78 LEU79 THR80 LEU81 GLU82 ILE83 VAL84 HIS85 ARG86 TYR87 VAL88 GLU89 LEU90 LEU91 ASP92 LYS93 TYR94 PHE95 GLY96 ASN97 VAL98 CYS99 GLU100 LEU101 ASP102 ILE103 ILE104 PHE105 ASN106 PHE107 GLU108 LYS109 ALA110 TYR111 PHE112 ILE113 LEU114 ASP115 GLU116 PHE117 ILE118 ILE119 GLY120 GLY121 GLU122 ILE123 GLN124 GLU125 THR126 SER127 LYS128 LYS129 ILE130 ALA131 VAL132 LYS133 ALA134 ILE135 GLU136 ASP137 SER138 ASP139 MET140 LEU141 GLN142 GLU143 VAL144 SER145
Unit 5 GLU17 MET18 ARG19 ILE20 LEU21 MET22 VAL23 GLY24 LEU25 ASP26 ALA27 ALA28 GLY29 LYS30 THR31 THR32 ILE33 LEU34 TYR35 LYS36 LEU37 LYS38 LEU39 GLY40 GLU41 ILE42 VAL43 THR44 THR45 ILE46 PRO47 THR48 ILE49 GLY50 PHE51 ASN52 VAL53 GLU54 THR55 VAL56 GLU57 TYR58 LYS59 ASN60 ILE61 SER62 PHE63 THR64 VAL65 TRP66 ASP67 VAL68 GLY69 GLY70 LEU71 ASP72 LYS73 ILE74 ARG75 PRO76 LEU77 TRP78 ARG79 HIS80 TYR81 PHE82 GLN83 ASN84 THR85 GLN86 GLY87 LEU88 ILE89 PHE90 VAL91 VAL92 ASP93 SER94 ASN95 ASP96 ARG97 GLU98 ARG99 VAL100 ASN101 GLU102 ALA103 ARG104 GLU105 GLU106 LEU107 MET108 ARG109 MET110 LEU111 ALA112 GLU113 ASP114 GLU115 LEU116 ARG117 ASP118 ALA119 VAL120 LEU121 LEU122 VAL123 PHE124 ALA125 ASN126 LYS127 GLN128 ASP129 LEU130 PRO131 ASN132 ALA133 MET134 ASN135 ALA136 ALA137 GLU138 ILE139 THR140 ASP141 LYS142 LEU143 GLY144 LEU145 HIS146 SER147 LEU148 ARG149 HIS150 ARG151 ASN152 TRP153 TYR154 ILE155 GLN156 ALA157 THR158 CYS159 ALA160 THR161 SER162 GLY163 ASP164 GLY165 LEU166 TYR167 GLU168 GLY169 LEU170 ASP171 TRP172 LEU173 SER174 ASN175 GLN176 LEU177 ARG178 ASN179 GLN180 LYS181
Ligands
Unit 6 GTP1001 MG1002
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany