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Sequence, Chains, Asymmetric and Biological Units

Title MOUSE SEMAPHORIN 3A, DOMAINS SEMA-PSI-IG
Keywords SEMA, MULTI-DOMAIN, CELL-CELL SIGNALING, PLEXIN, GLYCOSILATE EXTRACELLULAR, SIGNALING PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4GZ8     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SEMAPHORIN-3A  A 557 4367 0
2  Protein   SEMAPHORIN-3A  B 555 4364 0
3  Ligand    C 4 0 50
4  Ligand    D 2 0 28
5  Ligand    E 4 0 50
6  Ligand   SEMAPHORIN-3A  A 4 0 7
7  Ligand   SEMAPHORIN-3A  B 4 0 20
total       1130 8731 155
Proteins
Unit 1 ASN27 ASN28 VAL29 PRO30 ARG31 LEU32 LYS33 LEU34 SER35 TYR36 LYS37 GLU38 MET39 LEU40 GLU41 SER42 ASN43 ASN44 VAL45 ILE46 THR47 PHE48 ASN49 GLY50 LEU51 ALA52 ASN53 SER54 SER55 SER56 TYR57 HIS58 THR59 PHE60 LEU61 LEU62 ASP63 GLU64 GLU65 ARG66 SER67 ARG68 LEU69 TYR70 VAL71 GLY72 ALA73 LYS74 ASP75 HIS76 ILE77 PHE78 SER79 PHE80 ASN81 LEU82 VAL83 ASN84 ILE85 LYS86 ASP87 PHE88 GLN89 LYS90 ILE91 VAL92 TRP93 PRO94 VAL95 SER96 TYR97 THR98 ARG99 ARG100 ASP101 GLU102 CYS103 LYS104 TRP105 ALA106 GLY107 LYS108 ASP109 ILE110 LEU111 LYS112 GLU113 CYS114 ALA115 ASN116 PHE117 ILE118 LYS119 VAL120 LEU121 GLU122 ALA123 TYR124 ASN125 GLN126 THR127 HIS128 LEU129 TYR130 ALA131 CYS132 GLY133 THR134 GLY135 ALA136 PHE137 HIS138 PRO139 ILE140 CYS141 THR142 TYR143 ILE144 GLU145 VAL146 GLY147 HIS148 HIS149 PRO150 GLU151 ASP152 ASN153 ILE154 PHE155 LYS156 LEU157 GLN158 ASP159 SER160 HIS161 PHE162 GLU163 ASN164 GLY165 ARG166 GLY167 LYS168 SER169 PRO170 TYR171 ASP172 PRO173 LYS174 LEU175 LEU176 THR177 ALA178 SER179 LEU180 LEU181 ILE182 ASP183 GLY184 GLU185 LEU186 TYR187 SER188 GLY189 THR190 ALA191 ALA192 ASP193 PHE194 MET195 GLY196 ARG197 ASP198 PHE199 ALA200 ILE201 PHE202 ARG203 THR204 LEU205 GLY206 HIS207 HIS208 HIS209 PRO210 ILE211 ARG212 THR213 GLU214 GLN215 HIS216 ASP217 SER218 ARG219 TRP220 LEU221 ASN222 ASP223 PRO224 ARG225 PHE226 ILE227 SER228 ALA229 HIS230 LEU231 ILE232 PRO233 GLU234 SER235 ASP236 ASN237 PRO238 GLU239 ASP240 ASP241 LYS242 VAL243 TYR244 PHE245 PHE246 PHE247 ARG248 GLU249 ASN250 ALA251 ILE252 ASP253 GLY254 HIS256 SER257 GLY258 LYS259 ALA260 THR261 HIS262 ALA263 ARG264 ILE265 GLY266 GLN267 ILE268 CYS269 LYS270 ASN271 ASP272 PHE273 GLY274 GLY275 HIS276 ARG277 SER278 LEU279 VAL280 ASN281 LYS282 TRP283 THR284 THR285 PHE286 LEU287 LYS288 ALA289 ARG290 LEU291 ILE292 CYS293 SER294 VAL295 PRO296 GLY297 PRO298 ASN299 GLY300 ILE301 ASP302 THR303 HIS304 PHE305 ASP306 GLU307 LEU308 GLN309 ASP310 VAL311 PHE312 LEU313 MET314 ASN315 SER316 LYS317 ASP318 PRO319 LYS320 ASN321 PRO322 ILE323 VAL324 TYR325 GLY326 VAL327 PHE328 THR329 THR330 SER331 SER332 ASN333 ILE334 PHE335 LYS336 GLY337 SER338 ALA339 VAL340 CYS341 MET342 TYR343 SER344 MET345 SER346 ASP347 VAL348 ARG349 ARG350 VAL351 PHE352 LEU353 GLY354 PRO355 TYR356 ALA357 HIS358 ARG359 ASP360 GLY361 PRO362 ASN363 TYR364 GLN365 TRP366 VAL367 PRO368 TYR369 GLN370 GLY371 ARG372 VAL373 PRO374 TYR375 PRO376 ARG377 PRO378 GLY379 THR380 CYS381 PRO382 SER383 LYS384 THR385 PHE386 GLY387 GLY388 PHE389 ASP390 SER391 THR392 LYS393 ASP394 LEU395 PRO396 ASP397 ASP398 VAL399 ILE400 THR401 PHE402 ALA403 ARG404 SER405 HIS406 PRO407 ALA408 MET409 TYR410 ASN411 PRO412 VAL413 PHE414 PRO415 ILE416 ASN417 ASN418 ARG419 PRO420 ILE421 MET422 ILE423 LYS424 THR425 ASP426 VAL427 ASN428 TYR429 GLN430 PHE431 THR432 GLN433 ILE434 VAL435 VAL436 ASP437 ARG438 VAL439 ASP440 ALA441 GLU442 ASP443 GLY444 GLN445 TYR446 ASP447 VAL448 MET449 PHE450 ILE451 GLY452 THR453 ASP454 VAL455 GLY456 THR457 VAL458 LEU459 LYS460 VAL461 VAL462 SER463 VAL464 PRO465 LEU472 GLU473 GLU474 VAL475 LEU476 LEU477 GLU478 GLU479 MET480 THR481 VAL482 PHE483 ARG484 GLU485 PRO486 THR487 THR488 ILE489 SER490 ALA491 MET492 GLU493 LEU494 SER495 THR496 LYS497 GLN498 GLN499 GLN500 LEU501 TYR502 ILE503 GLY504 SER505 THR506 ALA507 GLY508 VAL509 ALA510 GLN511 LEU512 PRO513 LEU514 HIS515 ARG516 CYS517 ASP518 ILE519 TYR520 GLY521 LYS522 ALA523 CYS524 ALA525 GLU526 CYS527 CYS528 LEU529 ALA530 ARG531 ASP532 PRO533 TYR534 CYS535 ALA536 TRP537 ASP538 GLY539 SER540 SER541 CYS542 SER543 ARG544 TYR545 PHE546 PRO547 THR553 ARG554 ALA555 GLN556 ASP557 ILE558 ARG559 ASN560 GLY561 ASP562 PRO563 LEU564 THR565 HIS566 CYS567 SER568 ASP569 UNK598 UNK599 UNK600 UNK601 UNK602 UNK603 UNK604 UNK605 UNK606 UNK607 UNK608 UNK609 UNK650 UNK651 UNK652 UNK653 UNK654 UNK655 UNK656 UNK660 UNK661 UNK662 UNK663 UNK664 UNK665 UNK666
Unit 2 LYS26 ASN27 ASN28 VAL29 PRO30 ARG31 LEU32 LYS33 LEU34 SER35 TYR36 LYS37 GLU38 MET39 LEU40 GLU41 SER42 ASN43 ASN44 VAL45 ILE46 THR47 PHE48 ASN49 GLY50 LEU51 ALA52 ASN53 SER54 SER55 SER56 TYR57 HIS58 THR59 PHE60 LEU61 LEU62 ASP63 GLU64 GLU65 ARG66 SER67 ARG68 LEU69 TYR70 VAL71 GLY72 ALA73 LYS74 ASP75 HIS76 ILE77 PHE78 SER79 PHE80 ASN81 LEU82 VAL83 ASN84 ILE85 LYS86 ASP87 PHE88 GLN89 LYS90 ILE91 VAL92 TRP93 PRO94 VAL95 SER96 TYR97 THR98 ARG99 ARG100 ASP101 GLU102 CYS103 LYS104 TRP105 ALA106 GLY107 LYS108 ASP109 ILE110 LEU111 LYS112 GLU113 CYS114 ALA115 ASN116 PHE117 ILE118 LYS119 VAL120 LEU121 GLU122 ALA123 TYR124 ASN125 GLN126 THR127 HIS128 LEU129 TYR130 ALA131 CYS132 GLY133 THR134 GLY135 ALA136 PHE137 HIS138 PRO139 ILE140 CYS141 THR142 TYR143 ILE144 GLU145 VAL146 GLY147 HIS148 HIS149 PRO150 GLU151 ASP152 ASN153 ILE154 PHE155 LYS156 LEU157 GLN158 ASP159 SER160 HIS161 PHE162 GLU163 ASN164 GLY165 ARG166 GLY167 LYS168 SER169 PRO170 TYR171 ASP172 PRO173 LYS174 LEU175 LEU176 THR177 ALA178 SER179 LEU180 LEU181 ILE182 ASP183 GLY184 GLU185 LEU186 TYR187 SER188 GLY189 THR190 ALA191 ALA192 ASP193 PHE194 MET195 GLY196 ARG197 ASP198 PHE199 ALA200 ILE201 PHE202 ARG203 THR204 LEU205 GLY206 HIS207 HIS208 HIS209 PRO210 ILE211 ARG212 THR213 GLU214 GLN215 HIS216 ASP217 SER218 ARG219 TRP220 LEU221 ASN222 ASP223 PRO224 ARG225 PHE226 ILE227 SER228 ALA229 HIS230 LEU231 ILE232 PRO233 GLU234 SER235 ASP236 ASN237 PRO238 GLU239 ASP240 ASP241 LYS242 VAL243 TYR244 PHE245 PHE246 PHE247 ARG248 GLU249 ASN250 ALA251 ILE252 ASP253 SER257 GLY258 LYS259 ALA260 THR261 HIS262 ALA263 ARG264 ILE265 GLY266 GLN267 ILE268 CYS269 LYS270 ASN271 ASP272 PHE273 GLY274 GLY275 HIS276 ARG277 SER278 LEU279 VAL280 ASN281 LYS282 TRP283 THR284 THR285 PHE286 LEU287 LYS288 ALA289 ARG290 LEU291 ILE292 CYS293 SER294 VAL295 PRO296 GLY297 PRO298 ASN299 GLY300 ILE301 ASP302 THR303 HIS304 PHE305 ASP306 GLU307 LEU308 GLN309 ASP310 VAL311 PHE312 LEU313 MET314 ASN315 SER316 LYS317 ASP318 PRO319 LYS320 ASN321 PRO322 ILE323 VAL324 TYR325 GLY326 VAL327 PHE328 THR329 THR330 SER331 SER332 ASN333 ILE334 PHE335 LYS336 GLY337 SER338 ALA339 VAL340 CYS341 MET342 TYR343 SER344 MET345 SER346 ASP347 VAL348 ARG349 ARG350 VAL351 PHE352 LEU353 GLY354 PRO355 TYR356 ALA357 HIS358 ARG359 ASP360 GLY361 PRO362 ASN363 TYR364 GLN365 TRP366 VAL367 PRO368 TYR369 GLN370 GLY371 ARG372 VAL373 PRO374 TYR375 PRO376 ARG377 PRO378 GLY379 THR380 CYS381 PRO382 SER383 LYS384 THR385 PHE386 GLY387 GLY388 PHE389 ASP390 SER391 THR392 LYS393 ASP394 LEU395 PRO396 ASP397 ASP398 VAL399 ILE400 THR401 PHE402 ALA403 ARG404 SER405 HIS406 PRO407 ALA408 MET409 TYR410 ASN411 PRO412 VAL413 PHE414 PRO415 ILE416 ASN417 ASN418 ARG419 PRO420 ILE421 MET422 ILE423 LYS424 THR425 ASP426 VAL427 ASN428 TYR429 GLN430 PHE431 THR432 GLN433 ILE434 VAL435 VAL436 ASP437 ARG438 VAL439 ASP440 ALA441 GLU442 ASP443 GLY444 GLN445 TYR446 ASP447 VAL448 MET449 PHE450 ILE451 GLY452 THR453 ASP454 VAL455 GLY456 THR457 VAL458 LEU459 LYS460 VAL461 VAL462 SER463 VAL464 PRO465 LYS466 LEU472 GLU473 GLU474 VAL475 LEU476 LEU477 GLU478 GLU479 MET480 THR481 VAL482 PHE483 ARG484 GLU485 PRO486 THR487 THR488 ILE489 SER490 ALA491 MET492 GLU493 LEU494 SER495 THR496 LYS497 GLN498 GLN499 GLN500 LEU501 TYR502 ILE503 GLY504 SER505 THR506 ALA507 GLY508 VAL509 ALA510 GLN511 LEU512 PRO513 LEU514 HIS515 ARG516 CYS517 ASP518 ILE519 TYR520 GLY521 LYS522 ALA523 CYS524 ALA525 GLU526 CYS527 CYS528 LEU529 ALA530 ARG531 ASP532 PRO533 TYR534 CYS535 ALA536 TRP537 ASP538 GLY539 SER540 SER541 CYS542 SER543 ARG544 TYR545 PHE546 PRO547 THR548 THR553 ARG554 ALA555 GLN556 ASP557 ILE558 ARG559 ASN560 GLY561 ASP562 PRO563 LEU564 THR565 HIS566 CYS567 SER568 ASP569 UNK599 UNK600 UNK601 UNK602 UNK603 UNK604 UNK605 UNK606 UNK607 UNK608 UNK609 UNK610 UNK649 UNK650 UNK651 UNK652 UNK653 UNK654 UNK661 UNK662 UNK663 UNK664 UNK665
Ligands
Unit 3 NAG1 NAG2 BMA3 MAN4
Unit 4 NAG1 NAG2
Unit 5 NAG1 NAG2 BMA3 MAN4
Unit 6 CA807 CA808 CA809 ACT810
Unit 7 CA801 CA802 NAG807 ACT808
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany