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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE HETEROTETRAMERIC COMPLEX OF GLUCD A FROM E. COLI K-12 MG1655 (EFI TARGET EFI-506058)
Keywords TIM-BARREL, LYASE-LYASE COMPLEX, STRUCTURAL GENOMICS, ENZYME INITIATIVE (EFI)
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4GYP     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLUCARATE DEHYDRATASE  A 444 3440 0
2  Protein   GLUCARATE DEHYDRATASE  B 443 3434 0
3  Protein   GLUCARATE DEHYDRATASE-RELATED PROTEIN  C 427 3298 0
4  Protein   GLUCARATE DEHYDRATASE-RELATED PROTEIN  D 440 3396 0
5  Ligand   GLUCARATE DEHYDRATASE  A 4 0 19
6  Ligand   GLUCARATE DEHYDRATASE  B 2 0 6
7  Ligand   GLUCARATE DEHYDRATASE-RELATED PROTEIN  C 3 0 26
8  Ligand   GLUCARATE DEHYDRATASE-RELATED PROTEIN  D 5 0 51
9 Water     1450 0 1450
total       3218 13568 1552

Proteins
Unit 1 SER3 GLN4 PHE5 THR6 THR7 PRO8 VAL9 VAL10 THR11 GLU12 MET13 GLN14 VAL15 ILE16 PRO17 VAL18 ALA19 GLY20 HIS21 ASP22 SER23 MET24 LEU25 MET26 ASN27 LEU28 SER29 GLY30 ALA31 HIS32 ALA33 PRO34 PHE35 PHE36 THR37 ARG38 ASN39 ILE40 VAL41 ILE42 ILE43 LYS44 ASP45 ASN46 SER47 GLY48 HIS49 THR50 GLY51 VAL52 GLY53 GLU54 ILE55 PRO56 GLY57 GLY58 GLU59 LYS60 ILE61 ARG62 LYS63 THR64 LEU65 GLU66 ASP67 ALA68 ILE69 PRO70 LEU71 VAL72 VAL73 GLY74 LYS75 THR76 LEU77 GLY78 GLU79 TYR80 LYS81 ASN82 VAL83 LEU84 THR85 LEU86 VAL87 ARG88 ASN89 THR90 PHE91 ALA92 ASP93 ARG94 ASP95 ALA96 GLY97 GLY98 ARG99 GLY100 LEU101 GLN102 THR103 PHE104 ASP105 LEU106 ARG107 THR108 THR109 ILE110 HIS111 VAL112 VAL113 THR114 GLY115 ILE116 GLU117 ALA118 ALA119 MET120 LEU121 ASP122 LEU123 LEU124 GLY125 GLN126 HIS127 LEU128 GLY129 VAL130 ASN131 VAL132 ALA133 SER134 LEU135 LEU136 GLY137 ASP138 GLY139 GLN140 GLN141 ARG142 SER143 GLU144 VAL145 GLU146 MET147 LEU148 GLY149 TYR150 LEU151 PHE152 PHE153 VAL154 GLY155 ASN156 ARG157 LYS158 ALA159 THR160 PRO161 LEU162 PRO163 TYR164 GLN165 SER166 GLN167 PRO168 ASP169 ASP170 SER171 CYS172 ASP173 TRP174 TYR175 ARG176 LEU177 ARG178 HIS179 GLU180 GLU181 ALA182 MET183 THR184 PRO185 ASP186 ALA187 VAL188 VAL189 ARG190 LEU191 ALA192 GLU193 ALA194 ALA195 TYR196 GLU197 LYS198 TYR199 GLY200 PHE201 ASN202 ASP203 PHE204 LYS205 LEU206 LYS207 GLY208 GLY209 VAL210 LEU211 ALA212 GLY213 GLU214 GLU215 GLU216 ALA217 GLU218 SER219 ILE220 VAL221 ALA222 LEU223 ALA224 GLN225 ARG226 PHE227 PRO228 GLN229 ALA230 ARG231 ILE232 THR233 LEU234 ASP235 PRO236 ASN237 GLY238 ALA239 TRP240 SER241 LEU242 ASN243 GLU244 ALA245 ILE246 LYS247 ILE248 GLY249 LYS250 TYR251 LEU252 LYS253 GLY254 SER255 LEU256 ALA257 TYR258 ALA259 GLU260 ASP261 PRO262 CYS263 GLY264 ALA265 GLU266 GLN267 GLY268 PHE269 SER270 GLY271 ARG272 GLU273 VAL274 MET275 ALA276 GLU277 PHE278 ARG279 ARG280 ALA281 THR282 GLY283 LEU284 PRO285 THR286 ALA287 THR288 ASN289 MET290 ILE291 ALA292 THR293 ASP294 TRP295 ARG296 GLN297 MET298 GLY299 HIS300 THR301 LEU302 SER303 LEU304 GLN305 SER306 VAL307 ASP308 ILE309 PRO310 LEU311 ALA312 ASP313 PRO314 HIS315 PHE316 TRP317 THR318 MET319 GLN320 GLY321 SER322 VAL323 ARG324 VAL325 ALA326 GLN327 MET328 CYS329 HIS330 GLU331 PHE332 GLY333 LEU334 THR335 TRP336 GLY337 SER338 HIS339 SER340 ASN341 ASN342 HIS343 PHE344 ASP345 ILE346 SER347 LEU348 ALA349 MET350 PHE351 THR352 HIS353 VAL354 ALA355 ALA356 ALA357 ALA358 PRO359 GLY360 LYS361 ILE362 THR363 ALA364 ILE365 ASP366 THR367 HIS368 TRP369 ILE370 TRP371 GLN372 GLU373 GLY374 ASN375 GLN376 ARG377 LEU378 THR379 LYS380 GLU381 PRO382 PHE383 GLU384 ILE385 LYS386 GLY387 GLY388 LEU389 VAL390 GLN391 VAL392 PRO393 GLU394 LYS395 PRO396 GLY397 LEU398 GLY399 VAL400 GLU401 ILE402 ASP403 MET404 ASP405 GLN406 VAL407 MET408 LYS409 ALA410 HIS411 GLU412 LEU413 TYR414 GLN415 LYS416 HIS417 GLY418 LEU419 GLY420 ALA421 ARG422 ASP423 ASP424 ALA425 MET426 GLY427 MET428 GLN429 TYR430 LEU431 ILE432 PRO433 GLY434 TRP435 THR436 PHE437 ASP438 ASN439 LYS440 ARG441 PRO442 CYS443 MET444 VAL445 ARG446
Unit 2 GLN4 PHE5 THR6 THR7 PRO8 VAL9 VAL10 THR11 GLU12 MET13 GLN14 VAL15 ILE16 PRO17 VAL18 ALA19 GLY20 HIS21 ASP22 SER23 MET24 LEU25 MET26 ASN27 LEU28 SER29 GLY30 ALA31 HIS32 ALA33 PRO34 PHE35 PHE36 THR37 ARG38 ASN39 ILE40 VAL41 ILE42 ILE43 LYS44 ASP45 ASN46 SER47 GLY48 HIS49 THR50 GLY51 VAL52 GLY53 GLU54 ILE55 PRO56 GLY57 GLY58 GLU59 LYS60 ILE61 ARG62 LYS63 THR64 LEU65 GLU66 ASP67 ALA68 ILE69 PRO70 LEU71 VAL72 VAL73 GLY74 LYS75 THR76 LEU77 GLY78 GLU79 TYR80 LYS81 ASN82 VAL83 LEU84 THR85 LEU86 VAL87 ARG88 ASN89 THR90 PHE91 ALA92 ASP93 ARG94 ASP95 ALA96 GLY97 GLY98 ARG99 GLY100 LEU101 GLN102 THR103 PHE104 ASP105 LEU106 ARG107 THR108 THR109 ILE110 HIS111 VAL112 VAL113 THR114 GLY115 ILE116 GLU117 ALA118 ALA119 MET120 LEU121 ASP122 LEU123 LEU124 GLY125 GLN126 HIS127 LEU128 GLY129 VAL130 ASN131 VAL132 ALA133 SER134 LEU135 LEU136 GLY137 ASP138 GLY139 GLN140 GLN141 ARG142 SER143 GLU144 VAL145 GLU146 MET147 LEU148 GLY149 TYR150 LEU151 PHE152 PHE153 VAL154 GLY155 ASN156 ARG157 LYS158 ALA159 THR160 PRO161 LEU162 PRO163 TYR164 GLN165 SER166 GLN167 PRO168 ASP169 ASP170 SER171 CYS172 ASP173 TRP174 TYR175 ARG176 LEU177 ARG178 HIS179 GLU180 GLU181 ALA182 MET183 THR184 PRO185 ASP186 ALA187 VAL188 VAL189 ARG190 LEU191 ALA192 GLU193 ALA194 ALA195 TYR196 GLU197 LYS198 TYR199 GLY200 PHE201 ASN202 ASP203 PHE204 LYS205 LEU206 LYS207 GLY208 GLY209 VAL210 LEU211 ALA212 GLY213 GLU214 GLU215 GLU216 ALA217 GLU218 SER219 ILE220 VAL221 ALA222 LEU223 ALA224 GLN225 ARG226 PHE227 PRO228 GLN229 ALA230 ARG231 ILE232 THR233 LEU234 ASP235 PRO236 ASN237 GLY238 ALA239 TRP240 SER241 LEU242 ASN243 GLU244 ALA245 ILE246 LYS247 ILE248 GLY249 LYS250 TYR251 LEU252 LYS253 GLY254 SER255 LEU256 ALA257 TYR258 ALA259 GLU260 ASP261 PRO262 CYS263 GLY264 ALA265 GLU266 GLN267 GLY268 PHE269 SER270 GLY271 ARG272 GLU273 VAL274 MET275 ALA276 GLU277 PHE278 ARG279 ARG280 ALA281 THR282 GLY283 LEU284 PRO285 THR286 ALA287 THR288 ASN289 MET290 ILE291 ALA292 THR293 ASP294 TRP295 ARG296 GLN297 MET298 GLY299 HIS300 THR301 LEU302 SER303 LEU304 GLN305 SER306 VAL307 ASP308 ILE309 PRO310 LEU311 ALA312 ASP313 PRO314 HIS315 PHE316 TRP317 THR318 MET319 GLN320 GLY321 SER322 VAL323 ARG324 VAL325 ALA326 GLN327 MET328 CYS329 HIS330 GLU331 PHE332 GLY333 LEU334 THR335 TRP336 GLY337 SER338 HIS339 SER340 ASN341 ASN342 HIS343 PHE344 ASP345 ILE346 SER347 LEU348 ALA349 MET350 PHE351 THR352 HIS353 VAL354 ALA355 ALA356 ALA357 ALA358 PRO359 GLY360 LYS361 ILE362 THR363 ALA364 ILE365 ASP366 THR367 HIS368 TRP369 ILE370 TRP371 GLN372 GLU373 GLY374 ASN375 GLN376 ARG377 LEU378 THR379 LYS380 GLU381 PRO382 PHE383 GLU384 ILE385 LYS386 GLY387 GLY388 LEU389 VAL390 GLN391 VAL392 PRO393 GLU394 LYS395 PRO396 GLY397 LEU398 GLY399 VAL400 GLU401 ILE402 ASP403 MET404 ASP405 GLN406 VAL407 MET408 LYS409 ALA410 HIS411 GLU412 LEU413 TYR414 GLN415 LYS416 HIS417 GLY418 LEU419 GLY420 ALA421 ARG422 ASP423 ASP424 ALA425 MET426 GLY427 MET428 GLN429 TYR430 LEU431 ILE432 PRO433 GLY434 TRP435 THR436 PHE437 ASP438 ASN439 LYS440 ARG441 PRO442 CYS443 MET444 VAL445 ARG446
Unit 3 SER6 PRO7 VAL8 ILE9 THR10 ASP11 MET12 LYS13 VAL14 ILE15 PRO16 VAL17 ALA18 GLY19 HIS20 ASP21 SER22 MET23 LEU24 LEU25 ASN26 ILE27 GLY28 GLY29 ALA30 HIS31 ASN32 ALA33 TYR34 PHE35 THR36 ARG37 ASN38 ILE39 VAL40 VAL41 LEU42 THR43 ASP44 ASN45 ALA46 GLY47 HIS48 THR49 GLY50 ILE51 GLY52 GLU53 ALA54 PRO55 GLY56 GLY57 ASP58 VAL59 ILE60 TYR61 GLN62 THR63 LEU64 VAL65 ASP66 ALA67 ILE68 PRO69 MET70 VAL71 LEU72 GLY73 GLN74 GLU75 VAL76 ALA77 ARG78 LEU79 ASN80 LYS81 VAL82 VAL83 GLN84 GLN85 VAL86 HIS87 LYS88 GLY89 ASN90 GLN91 GLU106 LEU107 ARG108 VAL109 ASN110 ALA111 VAL112 ALA113 ALA114 LEU115 GLU116 ALA117 ALA118 LEU119 LEU120 ASP121 LEU122 LEU123 GLY124 LYS125 ALA126 LEU127 ASN128 VAL129 PRO130 VAL131 CYS132 GLU133 LEU134 LEU135 GLY136 PRO137 GLY138 LYS139 GLN140 ARG141 GLU142 ALA143 ILE144 THR145 VAL146 LEU147 GLY148 TYR149 LEU150 PHE151 TYR152 ILE153 GLY154 ASP155 ARG156 THR157 LYS158 THR159 ASP160 LEU161 PRO162 TYR163 VAL164 GLU165 ASN166 THR167 PRO168 GLY169 ASN170 HIS171 GLU172 TRP173 TYR174 GLN175 LEU176 ARG177 HIS178 GLN179 LYS180 ALA181 MET182 ASN183 SER184 GLU185 ALA186 VAL187 VAL188 ARG189 LEU190 ALA191 GLU192 ALA193 SER194 GLN195 ASP196 ARG197 TYR198 GLY199 PHE200 LYS201 ASP202 PHE203 LYS204 LEU205 LYS206 GLY207 GLY208 VAL209 LEU210 PRO211 GLY212 GLU213 GLN214 GLU215 ILE216 ASP217 THR218 VAL219 ARG220 ALA221 LEU222 LYS223 LYS224 ARG225 PHE226 PRO227 ASP228 ALA229 ARG230 ILE231 THR232 VAL233 ASP234 PRO235 ASN236 GLY237 ALA238 TRP239 LEU240 LEU241 ASP242 GLU243 ALA244 ILE245 SER246 LEU247 CYS248 LYS249 GLY250 LEU251 ASN252 ASP253 VAL254 LEU255 THR256 TYR257 ALA258 GLU259 ASP260 PRO261 CYS262 GLY263 ALA264 GLU265 GLN266 GLY267 PHE268 SER269 GLY270 ARG271 GLU272 VAL273 MET274 ALA275 GLU276 PHE277 ARG278 ARG279 ALA280 THR281 GLY282 LEU283 PRO284 VAL285 ALA286 THR287 ASN288 MET289 ILE290 ALA291 THR292 ASN293 TRP294 ARG295 GLU296 MET297 GLY298 HIS299 ALA300 VAL301 MET302 LEU303 ASN304 ALA305 VAL306 ASP307 ILE308 PRO309 LEU310 ALA311 ASP312 PRO313 HIS314 PHE315 TRP316 THR317 LEU318 SER319 GLY320 ALA321 VAL322 ARG323 VAL324 ALA325 GLN326 LEU327 CYS328 ASP329 ASP330 TRP331 GLY332 LEU333 THR334 TRP335 GLY336 CYS337 HIS338 SER339 ASN340 ASN341 HIS342 PHE343 ASP344 ILE345 SER346 LEU347 ALA348 MET349 PHE350 THR351 HIS352 VAL353 GLY354 ALA355 ALA356 ALA357 PRO358 GLY359 ASN360 PRO361 THR362 ALA363 ILE364 ASP365 THR366 HIS367 TRP368 ILE369 TRP370 GLN371 GLU372 GLY373 ASP374 CYS375 ARG376 LEU377 THR378 GLN379 ASN380 PRO381 LEU382 GLU383 ILE384 LYS385 ASN386 GLY387 LYS388 ILE389 ALA390 VAL391 PRO392 ASP393 ALA394 PRO395 GLY396 LEU397 GLY398 VAL399 GLU400 LEU401 ASP402 TRP403 GLU404 GLN405 VAL406 GLN407 LYS408 ALA409 HIS410 GLU411 ALA412 TYR413 LYS414 ARG415 LEU416 PRO417 GLY418 GLY419 ALA420 ARG421 ASN422 ASP423 ALA424 GLY425 PRO426 MET427 GLN428 TYR429 LEU430 ILE431 PRO432 GLY433 TRP434 THR435 PHE436 ASP437 ARG438 LYS439 ARG440 PRO441 VAL442 PHE443 GLY444 ARG445 HIS446
Unit 4 SER6 PRO7 VAL8 ILE9 THR10 ASP11 MET12 LYS13 VAL14 ILE15 PRO16 VAL17 ALA18 GLY19 HIS20 ASP21 SER22 MET23 LEU24 LEU25 ASN26 ILE27 GLY28 GLY29 ALA30 HIS31 ASN32 ALA33 TYR34 PHE35 THR36 ARG37 ASN38 ILE39 VAL40 VAL41 LEU42 THR43 ASP44 ASN45 ALA46 GLY47 HIS48 THR49 GLY50 ILE51 GLY52 GLU53 ALA54 PRO55 GLY56 GLY57 ASP58 VAL59 ILE60 TYR61 GLN62 THR63 LEU64 VAL65 ASP66 ALA67 ILE68 PRO69 MET70 VAL71 LEU72 GLY73 GLN74 GLU75 VAL76 ALA77 ARG78 LEU79 ASN80 LYS81 VAL82 VAL83 GLN84 GLN85 VAL86 HIS87 LYS88 GLY89 ASN90 GLN91 ALA92 ALA93 ASP94 PHE95 ASP96 THR97 PHE98 GLY99 LYS100 GLY101 ALA102 TRP103 THR104 PHE105 GLU106 LEU107 ARG108 VAL109 ASN110 ALA111 VAL112 ALA113 ALA114 LEU115 GLU116 ALA117 ALA118 LEU119 LEU120 ASP121 LEU122 LEU123 GLY124 LYS125 ALA126 LEU127 ASN128 VAL129 PRO130 VAL131 CYS132 GLU133 LEU134 LEU135 GLY136 PRO137 GLY138 LYS139 GLN140 ARG141 GLU142 ALA143 ILE144 THR145 VAL146 LEU147 GLY148 TYR149 LEU150 PHE151 TYR152 ILE153 GLY154 ASP155 ARG156 THR157 LYS158 THR159 ASP160 LEU161 PRO162 TYR163 VAL164 GLU165 ASN166 THR167 PRO168 GLY169 ASN170 HIS171 GLU172 TRP173 TYR174 GLN175 LEU176 ARG177 HIS178 GLN179 LYS180 ALA181 MET182 ASN183 SER184 GLU185 ALA186 VAL187 VAL188 ARG189 LEU190 ALA191 GLU192 ALA193 SER194 GLN195 ASP196 ARG197 TYR198 GLY199 PHE200 LYS201 ASP202 PHE203 LYS204 LEU205 LYS206 GLY207 GLY208 VAL209 LEU210 PRO211 GLY212 GLU213 GLN214 GLU215 ILE216 ASP217 THR218 VAL219 ARG220 ALA221 LEU222 LYS223 LYS224 ARG225 PHE226 PRO227 ASP228 ALA229 ARG230 ILE231 THR232 VAL233 ASP234 PRO235 ASN236 GLY237 ALA238 TRP239 LEU240 LEU241 ASP242 GLU243 ALA244 ILE245 SER246 LEU247 CYS248 LYS249 GLY250 LEU251 ASN252 ASP253 VAL254 LEU255 THR256 TYR257 ALA258 GLU259 ASP260 PRO261 CYS262 GLY263 ALA264 GLU265 GLN266 GLY267 PHE268 SER269 GLY270 ARG271 GLU272 VAL273 MET274 ALA275 GLU276 PHE277 ARG278 ARG279 ALA280 THR281 GLY282 LEU283 PRO284 VAL285 ALA286 THR287 ASN288 MET289 ILE290 ALA291 THR292 ASN293 TRP294 ARG295 GLU296 MET297 GLY298 HIS299 ALA300 VAL301 MET302 LEU303 ASN304 ALA305 VAL306 ASP307 ILE308 PRO309 LEU310 ALA311 ASP312 PRO313 HIS314 PHE315 TRP316 THR317 LEU318 SER319 GLY320 ALA321 VAL322 ARG323 VAL324 ALA325 GLN326 LEU327 CYS328 ASP329 ASP330 TRP331 GLY332 LEU333 THR334 TRP335 GLY336 CYS337 HIS338 SER339 ASN340 ASN341 HIS342 PHE343 ASP344 ILE345 SER346 LEU347 ALA348 MET349 PHE350 THR351 HIS352 VAL353 GLY354 ALA355 ALA356 ALA357 PRO358 GLY359 ASN360 PRO361 THR362 ALA363 ILE364 ASP365 THR366 HIS367 TRP368 ILE369 TRP370 GLN371 GLU372 GLY373 ASP374 CYS375 ARG376 LEU377 THR378 GLN379 ASN380 PRO381 LEU382 GLU383 ILE384 LYS385 ASN386 GLY387 LYS388 ILE389 ALA390 VAL391 PRO392 ASP393 ALA394 PRO395 GLY396 LEU397 GLY398 VAL399 GLU400 LEU401 ASP402 TRP403 GLU404 GLN405 VAL406 GLN407 LYS408 ALA409 HIS410 GLU411 ALA412 TYR413 LYS414 ARG415 LEU416 PRO417 GLY418 GLY419 ALA420 ARG421 ASN422 ASP423 ALA424 GLY425 PRO426 MET427 GLN428 TYR429 LEU430 ILE431 PRO432 GLY433 TRP434 THR435 PHE436 ASP437 ARG438 LYS439 ARG440 PRO441 VAL442 PHE443 GLY444 ARG445

Ligands
Unit 5 MG501 SO4502 GOL503 PEG504
Unit 6 MG501 SO4502
Unit 7 CIT501 GOL502 PEG503
Unit 8 CIT501 P6G502 GOL503 GOL504 PEG505

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany