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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF MUTANT (D318N) BACILLUS SUBTILIS FAMILY GLYCOSIDE HYDROLASE (NAGZ) IN COMPLEX WITH GLCNAC-MURNAC (S P1)
Keywords TIM-BARREL, HYDROLASE, HYDROLASE-SUBSTRATE COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4GYJ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UNCHARACTERIZED LIPOPROTEIN YBBD  A 618 4660 0
2  Protein   UNCHARACTERIZED LIPOPROTEIN YBBD  B 617 4633 0
3  Ligand    C 2 0 34
4  Ligand    D 2 0 34
5  Ligand   UNCHARACTERIZED LIPOPROTEIN YBBD  A 1 0 15
6  Ligand   UNCHARACTERIZED LIPOPROTEIN YBBD  B 1 0 15
7 Water     1069 0 1069
total       2310 9293 1167
Proteins
Unit 1 GLU25 ALA26 SER27 ALA28 SER29 LYS30 ARG31 ALA32 ILE33 ASP34 ALA35 ASN36 GLN37 ILE38 VAL39 ASN40 ARG41 MET42 SER43 LEU44 ASP45 GLU46 LYS47 LEU48 GLY49 GLN50 MET51 LEU52 MET53 PRO54 ASP55 PHE56 ARG57 ASN58 TRP59 GLN60 LYS61 GLU62 GLY63 GLU64 SER65 SER66 PRO67 GLN68 ALA69 LEU70 THR71 LYS72 MET73 ASN74 ASP75 GLU76 VAL77 ALA78 SER79 LEU80 VAL81 LYS82 LYS83 TYR84 GLN85 PHE86 GLY87 GLY88 ILE89 ILE90 LEU91 PHE92 ALA93 GLU94 ASN95 VAL96 LYS97 THR98 THR99 LYS100 GLN101 THR102 VAL103 GLN104 LEU105 THR106 ASP107 ASP108 TYR109 GLN110 LYS111 ALA112 SER113 PRO114 LYS115 ILE116 PRO117 LEU118 MET119 LEU120 SER121 ILE122 ASP123 GLN124 GLU125 GLY126 GLY127 ILE128 VAL129 THR130 ARG131 LEU132 GLY133 GLU134 GLY135 THR136 ASN137 PHE138 PRO139 GLY140 ASN141 MET142 ALA143 LEU144 GLY145 ALA146 ALA147 ARG148 SER149 ARG150 ILE151 ASN152 ALA153 TYR154 GLN155 THR156 GLY157 SER158 ILE159 ILE160 GLY161 LYS162 GLU163 LEU164 SER165 ALA166 LEU167 GLY168 ILE169 ASN170 THR171 ASP172 PHE173 SER174 PRO175 VAL176 VAL177 ASP178 ILE179 ASN180 ASN181 ASN182 PRO183 ASP184 ASN185 PRO186 VAL187 ILE188 GLY189 VAL190 ARG191 SER192 PHE193 SER194 SER195 ASN196 ARG197 GLU198 LEU199 THR200 SER201 ARG202 LEU203 GLY204 LEU205 TYR206 THR207 MET208 LYS209 GLY210 LEU211 GLN212 ARG213 GLN214 ASP215 ILE216 ALA217 SER218 ALA219 LEU220 LYS221 HIS222 PHE223 PRO224 GLY225 HIS226 GLY227 ASP228 THR229 ASP230 VAL231 ASP232 SER233 HIS234 TYR235 GLY236 LEU237 PRO238 LEU239 VAL240 SER241 HIS242 GLY243 GLN244 GLU245 ARG246 LEU247 ARG248 GLU249 VAL250 GLU251 LEU252 TYR253 PRO254 PHE255 GLN256 LYS257 ALA258 ILE259 ASP260 ALA261 GLY262 ALA263 ASP264 MET265 VAL266 MET267 THR268 ALA269 HIS270 VAL271 GLN272 PHE273 PRO274 ALA275 PHE276 ASP277 ASP278 THR279 THR280 TYR281 LYS282 SER283 LYS284 LEU285 ASP286 GLY287 SER288 ASP289 ILE290 LEU291 VAL292 PRO293 ALA294 THR295 LEU296 SER297 LYS298 LYS299 VAL300 MET301 THR302 GLY303 LEU304 LEU305 ARG306 GLN307 GLU308 MET309 GLY310 PHE311 ASN312 GLY313 VAL314 ILE315 VAL316 THR317 ASN318 ALA319 LEU320 ASN321 MET322 LYS323 ALA324 ILE325 ALA326 ASP327 HIS328 PHE329 GLY330 GLN331 GLU332 GLU333 ALA334 VAL335 VAL336 MET337 ALA338 VAL339 LYS340 ALA341 GLY342 VAL343 ASP344 ILE345 ALA346 LEU347 MET348 PRO349 ALA350 SER351 VAL352 THR353 SER354 LEU355 LYS356 GLU357 GLU358 GLN359 LYS360 PHE361 ALA362 ARG363 VAL364 ILE365 GLN366 ALA367 LEU368 LYS369 GLU370 ALA371 VAL372 LYS373 ASN374 GLY375 ASP376 ILE377 PRO378 GLU379 GLN380 GLN381 ILE382 ASN383 ASN384 SER385 VAL386 GLU387 ARG388 ILE389 ILE390 SER391 LEU392 LYS393 ILE394 LYS395 ARG396 GLY397 MET398 TYR399 PRO400 ALA401 ARG402 ASN403 SER404 ASP405 SER406 THR407 LYS408 GLU409 LYS410 ILE411 ALA412 LYS413 ALA414 LYS415 LYS416 ILE417 VAL418 GLY419 SER420 LYS421 GLN422 HIS423 LEU424 LYS425 ALA426 GLU427 LYS428 LYS429 LEU430 ALA431 GLU432 LYS433 ALA434 VAL435 THR436 VAL437 LEU438 LYS439 ASN440 GLU441 GLN442 HIS443 THR444 LEU445 PRO446 PHE447 LYS448 PRO449 LYS450 LYS451 GLY452 SER453 ARG454 ILE455 LEU456 ILE457 VAL458 ALA459 PRO460 TYR461 GLU462 GLU463 GLN464 THR465 ALA466 SER467 ILE468 GLU469 GLN470 THR471 ILE472 HIS473 ASP474 LEU475 ILE476 LYS477 ARG478 LYS479 LYS480 ILE481 LYS482 PRO483 VAL484 SER485 LEU486 SER487 LYS488 MET489 ASN490 PHE491 ALA492 SER493 GLN494 VAL495 PHE496 LYS497 THR498 GLU499 HIS500 GLU501 LYS502 GLN503 VAL504 LYS505 GLU506 ALA507 ASP508 TYR509 ILE510 ILE511 THR512 GLY513 SER514 TYR515 VAL516 VAL517 LYS518 ASN519 ASP520 PRO521 VAL522 VAL523 ASN524 ASP525 GLY526 VAL527 ILE528 ASP529 ASP530 THR531 ILE532 SER533 ASP534 SER535 SER536 LYS537 TRP538 ALA539 THR540 VAL541 PHE542 PRO543 ARG544 ALA545 VAL546 MET547 LYS548 ALA549 ALA550 LEU551 GLN552 HIS553 ASN554 LYS555 PRO556 PHE557 VAL558 LEU559 MET560 SER561 LEU562 ARG563 ASN564 PRO565 TYR566 ASP567 ALA568 ALA569 ASN570 PHE571 GLU572 GLU573 ALA574 LYS575 ALA576 LEU577 ILE578 ALA579 VAL580 TYR581 GLY582 PHE583 LYS584 GLY585 TYR586 ALA587 ASN588 GLY589 ARG590 TYR591 LEU592 GLN593 PRO594 ASN595 ILE596 PRO597 ALA598 GLY599 VAL600 MET601 ALA602 ILE603 PHE604 GLY605 GLN606 ALA607 LYS608 PRO609 LYS610 GLY611 THR612 LEU613 PRO614 VAL615 ASP616 ILE617 PRO618 SER619 VAL620 THR621 LYS622 PRO623 GLY624 ASN625 THR626 LEU627 TYR628 PRO629 LEU630 GLY631 TYR632 GLY633 LEU634 ASN635 ILE636 LYS637 THR638 GLY639 ARG640 PRO641 LEU642
Unit 2 ALA26 SER27 ALA28 SER29 LYS30 ARG31 ALA32 ILE33 ASP34 ALA35 ASN36 GLN37 ILE38 VAL39 ASN40 ARG41 MET42 SER43 LEU44 ASP45 GLU46 LYS47 LEU48 GLY49 GLN50 MET51 LEU52 MET53 PRO54 ASP55 PHE56 ARG57 ASN58 TRP59 GLN60 LYS61 GLU62 GLY63 GLU64 SER65 SER66 PRO67 GLN68 ALA69 LEU70 THR71 LYS72 MET73 ASN74 ASP75 GLU76 VAL77 ALA78 SER79 LEU80 VAL81 LYS82 LYS83 TYR84 GLN85 PHE86 GLY87 GLY88 ILE89 ILE90 LEU91 PHE92 ALA93 GLU94 ASN95 VAL96 LYS97 THR98 THR99 LYS100 GLN101 THR102 VAL103 GLN104 LEU105 THR106 ASP107 ASP108 TYR109 GLN110 LYS111 ALA112 SER113 PRO114 LYS115 ILE116 PRO117 LEU118 MET119 LEU120 SER121 ILE122 ASP123 GLN124 GLU125 GLY126 GLY127 ILE128 VAL129 THR130 ARG131 LEU132 GLY133 GLU134 GLY135 THR136 ASN137 PHE138 PRO139 GLY140 ASN141 MET142 ALA143 LEU144 GLY145 ALA146 ALA147 ARG148 SER149 ARG150 ILE151 ASN152 ALA153 TYR154 GLN155 THR156 GLY157 SER158 ILE159 ILE160 GLY161 LYS162 GLU163 LEU164 SER165 ALA166 LEU167 GLY168 ILE169 ASN170 THR171 ASP172 PHE173 SER174 PRO175 VAL176 VAL177 ASP178 ILE179 ASN180 ASN181 ASN182 PRO183 ASP184 ASN185 PRO186 VAL187 ILE188 GLY189 VAL190 ARG191 SER192 PHE193 SER194 SER195 ASN196 ARG197 GLU198 LEU199 THR200 SER201 ARG202 LEU203 GLY204 LEU205 TYR206 THR207 MET208 LYS209 GLY210 LEU211 GLN212 ARG213 GLN214 ASP215 ILE216 ALA217 SER218 ALA219 LEU220 LYS221 HIS222 PHE223 PRO224 GLY225 HIS226 GLY227 ASP228 THR229 ASP230 VAL231 ASP232 SER233 HIS234 TYR235 GLY236 LEU237 PRO238 LEU239 VAL240 SER241 HIS242 GLY243 GLN244 GLU245 ARG246 LEU247 ARG248 GLU249 VAL250 GLU251 LEU252 TYR253 PRO254 PHE255 GLN256 LYS257 ALA258 ILE259 ASP260 ALA261 GLY262 ALA263 ASP264 MET265 VAL266 MET267 THR268 ALA269 HIS270 VAL271 GLN272 PHE273 PRO274 ALA275 PHE276 ASP277 ASP278 THR279 THR280 TYR281 LYS282 SER283 LYS284 LEU285 ASP286 GLY287 SER288 ASP289 ILE290 LEU291 VAL292 PRO293 ALA294 THR295 LEU296 SER297 LYS298 LYS299 VAL300 MET301 THR302 GLY303 LEU304 LEU305 ARG306 GLN307 GLU308 MET309 GLY310 PHE311 ASN312 GLY313 VAL314 ILE315 VAL316 THR317 ASN318 ALA319 LEU320 ASN321 MET322 LYS323 ALA324 ILE325 ALA326 ASP327 HIS328 PHE329 GLY330 GLN331 GLU332 GLU333 ALA334 VAL335 VAL336 MET337 ALA338 VAL339 LYS340 ALA341 GLY342 VAL343 ASP344 ILE345 ALA346 LEU347 MET348 PRO349 ALA350 SER351 VAL352 THR353 SER354 LEU355 LYS356 GLU357 GLU358 GLN359 LYS360 PHE361 ALA362 ARG363 VAL364 ILE365 GLN366 ALA367 LEU368 LYS369 GLU370 ALA371 VAL372 LYS373 ASN374 GLY375 ASP376 ILE377 PRO378 GLU379 GLN380 GLN381 ILE382 ASN383 ASN384 SER385 VAL386 GLU387 ARG388 ILE389 ILE390 SER391 LEU392 LYS393 ILE394 LYS395 ARG396 GLY397 MET398 TYR399 PRO400 ALA401 ARG402 ASN403 SER404 ASP405 SER406 THR407 LYS408 GLU409 LYS410 ILE411 ALA412 LYS413 ALA414 LYS415 LYS416 ILE417 VAL418 GLY419 SER420 LYS421 GLN422 HIS423 LEU424 LYS425 ALA426 GLU427 LYS428 LYS429 LEU430 ALA431 GLU432 LYS433 ALA434 VAL435 THR436 VAL437 LEU438 LYS439 ASN440 GLU441 GLN442 HIS443 THR444 LEU445 PRO446 PHE447 LYS448 PRO449 LYS450 LYS451 GLY452 SER453 ARG454 ILE455 LEU456 ILE457 VAL458 ALA459 PRO460 TYR461 GLU462 GLU463 GLN464 THR465 ALA466 SER467 ILE468 GLU469 GLN470 THR471 ILE472 HIS473 ASP474 LEU475 ILE476 LYS477 ARG478 LYS479 LYS480 ILE481 LYS482 PRO483 VAL484 SER485 LEU486 SER487 LYS488 MET489 ASN490 PHE491 ALA492 SER493 GLN494 VAL495 PHE496 LYS497 THR498 GLU499 HIS500 GLU501 LYS502 GLN503 VAL504 LYS505 GLU506 ALA507 ASP508 TYR509 ILE510 ILE511 THR512 GLY513 SER514 TYR515 VAL516 VAL517 LYS518 ASN519 ASP520 PRO521 VAL522 VAL523 ASN524 ASP525 GLY526 VAL527 ILE528 ASP529 ASP530 THR531 ILE532 SER533 ASP534 SER535 SER536 LYS537 TRP538 ALA539 THR540 VAL541 PHE542 PRO543 ARG544 ALA545 VAL546 MET547 LYS548 ALA549 ALA550 LEU551 GLN552 HIS553 ASN554 LYS555 PRO556 PHE557 VAL558 LEU559 MET560 SER561 LEU562 ARG563 ASN564 PRO565 TYR566 ASP567 ALA568 ALA569 ASN570 PHE571 GLU572 GLU573 ALA574 LYS575 ALA576 LEU577 ILE578 ALA579 VAL580 TYR581 GLY582 PHE583 LYS584 GLY585 TYR586 ALA587 ASN588 GLY589 ARG590 TYR591 LEU592 GLN593 PRO594 ASN595 ILE596 PRO597 ALA598 GLY599 VAL600 MET601 ALA602 ILE603 PHE604 GLY605 GLN606 ALA607 LYS608 PRO609 LYS610 GLY611 THR612 LEU613 PRO614 VAL615 ASP616 ILE617 PRO618 SER619 VAL620 THR621 LYS622 PRO623 GLY624 ASN625 THR626 LEU627 TYR628 PRO629 LEU630 GLY631 TYR632 GLY633 LEU634 ASN635 ILE636 LYS637 THR638 GLY639 ARG640 PRO641 LEU642
Ligands
Unit 3 MUB1 NAG2
Unit 4 MUB1 NAG2
Unit 5 NAG702
Unit 6 NAG702
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany