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Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURE OF LOBSTER APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE AT 3.0 ANGSTROMS RESOLUTION
Keywords OXIDOREDUCTASE(ALDEHYDE(D)-NAD(A))
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4GPD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  1 333 2507 0
2  Protein   APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  2 333 2507 0
3  Protein   APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  3 333 2507 0
4  Protein   APO-D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE  4 333 2507 0
5 Water     122 0 122
total       1454 10028 122
Proteins
Unit 1 SER1 LYS2 ILE3 GLY4 ILE5 ASN6 GLY7 PHE8 GLY9 ARG10 ILE11 GLY12 ARG13 LEU14 VAL15 LEU16 ARG17 ALA18 ALA19 LEU20 SER21 CYS22 GLY23 ALA24 GLN25 VAL26 VAL27 ALA28 VAL29 ASN30 ASP31 PRO32 PHE33 ILE34 ALA35 LEU36 GLU37 TYR38 MET39 VAL40 TYR41 MET42 PHE43 LYS44 TYR45 ASP46 SER47 THR48 HIS49 GLY50 VAL51 PHE52 LYS53 GLY54 GLU55 VAL56 LYS57 MET58 GLU59 ASP60 GLY61 ALA62 LEU63 VAL64 VAL65 ASP66 GLY67 LYS68 LYS69 ILE70 THR71 VAL72 PHE73 ASN74 GLU75 MET76 LYS77 PRO78 GLU79 ASN80 ILE81 PRO82 TRP83 SER84 LYS85 ALA86 GLY87 ALA88 GLU89 TYR90 ILE91 VAL92 GLU93 SER94 THR95 GLY96 VAL97 PHE98 THR99 THR100 ILE101 GLU102 LYS103 ALA104 SER105 ALA106 HIS107 PHE108 LYS109 GLY110 GLY111 ALA112 LYS113 LYS114 VAL115 VAL116 ILE117 SER118 ALA119 PRO120 SER121 ALA122 ASP123 ALA124 PRO125 MET126 PHE127 VAL128 CYS129 GLY130 VAL131 ASN132 LEU133 GLU134 LYS135 TYR136 SER137 LYS138 ASP139 MET140 THR141 VAL142 VAL143 SER144 ASN145 ALA146 SER147 CYS148 THR149 THR150 ASN151 CYS152 LEU153 ALA154 PRO155 VAL156 ALA157 LYS158 VAL159 LEU160 HIS161 GLU162 ASN163 PHE164 GLU165 ILE166 VAL167 GLU168 GLY169 LEU170 MET171 THR172 THR173 VAL174 HIS175 ALA176 VAL177 THR178 ALA179 THR180 GLN181 LYS182 THR183 VAL184 ASP185 GLY186 PRO187 SER188 ALA189 LYS190 ASP191 TRP192 ARG193 GLY194 GLY195 ARG196 GLY197 ALA198 ALA199 GLN200 ASN201 ILE202 ILE203 PRO204 SER205 SER206 THR207 GLY208 ALA209 ALA210 LYS211 ALA212 VAL213 GLY214 LYS215 VAL216 ILE217 PRO218 GLU219 LEU220 ASP221 GLY222 LYS223 LEU224 THR225 GLY226 MET227 ALA228 PHE229 ARG230 VAL231 PRO232 THR233 PRO234 ASP235 VAL236 SER237 VAL238 VAL239 ASP240 LEU241 THR242 VAL243 ARG244 LEU245 GLY246 LYS247 GLU248 CYS249 SER250 TYR251 ASP252 ASP253 ILE254 LYS255 ALA256 ALA257 MET258 LYS259 THR260 ALA261 SER262 GLU263 GLY264 PRO265 LEU266 GLN267 GLY268 PHE269 LEU270 GLY271 TYR272 THR273 GLU274 ASP275 ASP276 VAL277 VAL278 SER279 SER280 ASP281 PHE282 ILE283 GLY284 ASP285 ASN286 ARG287 SER288 SER289 ILE290 PHE291 ASP292 ALA293 LYS294 ALA295 GLY296 ILE297 GLN298 LEU299 SER300 LYS301 THR302 PHE303 VAL304 LYS305 VAL306 VAL307 SER308 TRP309 TYR310 ASP311 ASN312 GLU313 PHE314 GLY315 TYR316 SER317 GLN318 ARG319 VAL320 ILE321 ASP322 LEU323 LEU324 LYS325 HIS326 MET327 GLN328 LYS329 VAL330 ASP331 SER332 ALA333
Unit 2 SER1 LYS2 ILE3 GLY4 ILE5 ASN6 GLY7 PHE8 GLY9 ARG10 ILE11 GLY12 ARG13 LEU14 VAL15 LEU16 ARG17 ALA18 ALA19 LEU20 SER21 CYS22 GLY23 ALA24 GLN25 VAL26 VAL27 ALA28 VAL29 ASN30 ASP31 PRO32 PHE33 ILE34 ALA35 LEU36 GLU37 TYR38 MET39 VAL40 TYR41 MET42 PHE43 LYS44 TYR45 ASP46 SER47 THR48 HIS49 GLY50 VAL51 PHE52 LYS53 GLY54 GLU55 VAL56 LYS57 MET58 GLU59 ASP60 GLY61 ALA62 LEU63 VAL64 VAL65 ASP66 GLY67 LYS68 LYS69 ILE70 THR71 VAL72 PHE73 ASN74 GLU75 MET76 LYS77 PRO78 GLU79 ASN80 ILE81 PRO82 TRP83 SER84 LYS85 ALA86 GLY87 ALA88 GLU89 TYR90 ILE91 VAL92 GLU93 SER94 THR95 GLY96 VAL97 PHE98 THR99 THR100 ILE101 GLU102 LYS103 ALA104 SER105 ALA106 HIS107 PHE108 LYS109 GLY110 GLY111 ALA112 LYS113 LYS114 VAL115 VAL116 ILE117 SER118 ALA119 PRO120 SER121 ALA122 ASP123 ALA124 PRO125 MET126 PHE127 VAL128 CYS129 GLY130 VAL131 ASN132 LEU133 GLU134 LYS135 TYR136 SER137 LYS138 ASP139 MET140 THR141 VAL142 VAL143 SER144 ASN145 ALA146 SER147 CYS148 THR149 THR150 ASN151 CYS152 LEU153 ALA154 PRO155 VAL156 ALA157 LYS158 VAL159 LEU160 HIS161 GLU162 ASN163 PHE164 GLU165 ILE166 VAL167 GLU168 GLY169 LEU170 MET171 THR172 THR173 VAL174 HIS175 ALA176 VAL177 THR178 ALA179 THR180 GLN181 LYS182 THR183 VAL184 ASP185 GLY186 PRO187 SER188 ALA189 LYS190 ASP191 TRP192 ARG193 GLY194 GLY195 ARG196 GLY197 ALA198 ALA199 GLN200 ASN201 ILE202 ILE203 PRO204 SER205 SER206 THR207 GLY208 ALA209 ALA210 LYS211 ALA212 VAL213 GLY214 LYS215 VAL216 ILE217 PRO218 GLU219 LEU220 ASP221 GLY222 LYS223 LEU224 THR225 GLY226 MET227 ALA228 PHE229 ARG230 VAL231 PRO232 THR233 PRO234 ASP235 VAL236 SER237 VAL238 VAL239 ASP240 LEU241 THR242 VAL243 ARG244 LEU245 GLY246 LYS247 GLU248 CYS249 SER250 TYR251 ASP252 ASP253 ILE254 LYS255 ALA256 ALA257 MET258 LYS259 THR260 ALA261 SER262 GLU263 GLY264 PRO265 LEU266 GLN267 GLY268 PHE269 LEU270 GLY271 TYR272 THR273 GLU274 ASP275 ASP276 VAL277 VAL278 SER279 SER280 ASP281 PHE282 ILE283 GLY284 ASP285 ASN286 ARG287 SER288 SER289 ILE290 PHE291 ASP292 ALA293 LYS294 ALA295 GLY296 ILE297 GLN298 LEU299 SER300 LYS301 THR302 PHE303 VAL304 LYS305 VAL306 VAL307 SER308 TRP309 TYR310 ASP311 ASN312 GLU313 PHE314 GLY315 TYR316 SER317 GLN318 ARG319 VAL320 ILE321 ASP322 LEU323 LEU324 LYS325 HIS326 MET327 GLN328 LYS329 VAL330 ASP331 SER332 ALA333
Unit 3 SER1 LYS2 ILE3 GLY4 ILE5 ASN6 GLY7 PHE8 GLY9 ARG10 ILE11 GLY12 ARG13 LEU14 VAL15 LEU16 ARG17 ALA18 ALA19 LEU20 SER21 CYS22 GLY23 ALA24 GLN25 VAL26 VAL27 ALA28 VAL29 ASN30 ASP31 PRO32 PHE33 ILE34 ALA35 LEU36 GLU37 TYR38 MET39 VAL40 TYR41 MET42 PHE43 LYS44 TYR45 ASP46 SER47 THR48 HIS49 GLY50 VAL51 PHE52 LYS53 GLY54 GLU55 VAL56 LYS57 MET58 GLU59 ASP60 GLY61 ALA62 LEU63 VAL64 VAL65 ASP66 GLY67 LYS68 LYS69 ILE70 THR71 VAL72 PHE73 ASN74 GLU75 MET76 LYS77 PRO78 GLU79 ASN80 ILE81 PRO82 TRP83 SER84 LYS85 ALA86 GLY87 ALA88 GLU89 TYR90 ILE91 VAL92 GLU93 SER94 THR95 GLY96 VAL97 PHE98 THR99 THR100 ILE101 GLU102 LYS103 ALA104 SER105 ALA106 HIS107 PHE108 LYS109 GLY110 GLY111 ALA112 LYS113 LYS114 VAL115 VAL116 ILE117 SER118 ALA119 PRO120 SER121 ALA122 ASP123 ALA124 PRO125 MET126 PHE127 VAL128 CYS129 GLY130 VAL131 ASN132 LEU133 GLU134 LYS135 TYR136 SER137 LYS138 ASP139 MET140 THR141 VAL142 VAL143 SER144 ASN145 ALA146 SER147 CYS148 THR149 THR150 ASN151 CYS152 LEU153 ALA154 PRO155 VAL156 ALA157 LYS158 VAL159 LEU160 HIS161 GLU162 ASN163 PHE164 GLU165 ILE166 VAL167 GLU168 GLY169 LEU170 MET171 THR172 THR173 VAL174 HIS175 ALA176 VAL177 THR178 ALA179 THR180 GLN181 LYS182 THR183 VAL184 ASP185 GLY186 PRO187 SER188 ALA189 LYS190 ASP191 TRP192 ARG193 GLY194 GLY195 ARG196 GLY197 ALA198 ALA199 GLN200 ASN201 ILE202 ILE203 PRO204 SER205 SER206 THR207 GLY208 ALA209 ALA210 LYS211 ALA212 VAL213 GLY214 LYS215 VAL216 ILE217 PRO218 GLU219 LEU220 ASP221 GLY222 LYS223 LEU224 THR225 GLY226 MET227 ALA228 PHE229 ARG230 VAL231 PRO232 THR233 PRO234 ASP235 VAL236 SER237 VAL238 VAL239 ASP240 LEU241 THR242 VAL243 ARG244 LEU245 GLY246 LYS247 GLU248 CYS249 SER250 TYR251 ASP252 ASP253 ILE254 LYS255 ALA256 ALA257 MET258 LYS259 THR260 ALA261 SER262 GLU263 GLY264 PRO265 LEU266 GLN267 GLY268 PHE269 LEU270 GLY271 TYR272 THR273 GLU274 ASP275 ASP276 VAL277 VAL278 SER279 SER280 ASP281 PHE282 ILE283 GLY284 ASP285 ASN286 ARG287 SER288 SER289 ILE290 PHE291 ASP292 ALA293 LYS294 ALA295 GLY296 ILE297 GLN298 LEU299 SER300 LYS301 THR302 PHE303 VAL304 LYS305 VAL306 VAL307 SER308 TRP309 TYR310 ASP311 ASN312 GLU313 PHE314 GLY315 TYR316 SER317 GLN318 ARG319 VAL320 ILE321 ASP322 LEU323 LEU324 LYS325 HIS326 MET327 GLN328 LYS329 VAL330 ASP331 SER332 ALA333
Unit 4 SER1 LYS2 ILE3 GLY4 ILE5 ASN6 GLY7 PHE8 GLY9 ARG10 ILE11 GLY12 ARG13 LEU14 VAL15 LEU16 ARG17 ALA18 ALA19 LEU20 SER21 CYS22 GLY23 ALA24 GLN25 VAL26 VAL27 ALA28 VAL29 ASN30 ASP31 PRO32 PHE33 ILE34 ALA35 LEU36 GLU37 TYR38 MET39 VAL40 TYR41 MET42 PHE43 LYS44 TYR45 ASP46 SER47 THR48 HIS49 GLY50 VAL51 PHE52 LYS53 GLY54 GLU55 VAL56 LYS57 MET58 GLU59 ASP60 GLY61 ALA62 LEU63 VAL64 VAL65 ASP66 GLY67 LYS68 LYS69 ILE70 THR71 VAL72 PHE73 ASN74 GLU75 MET76 LYS77 PRO78 GLU79 ASN80 ILE81 PRO82 TRP83 SER84 LYS85 ALA86 GLY87 ALA88 GLU89 TYR90 ILE91 VAL92 GLU93 SER94 THR95 GLY96 VAL97 PHE98 THR99 THR100 ILE101 GLU102 LYS103 ALA104 SER105 ALA106 HIS107 PHE108 LYS109 GLY110 GLY111 ALA112 LYS113 LYS114 VAL115 VAL116 ILE117 SER118 ALA119 PRO120 SER121 ALA122 ASP123 ALA124 PRO125 MET126 PHE127 VAL128 CYS129 GLY130 VAL131 ASN132 LEU133 GLU134 LYS135 TYR136 SER137 LYS138 ASP139 MET140 THR141 VAL142 VAL143 SER144 ASN145 ALA146 SER147 CYS148 THR149 THR150 ASN151 CYS152 LEU153 ALA154 PRO155 VAL156 ALA157 LYS158 VAL159 LEU160 HIS161 GLU162 ASN163 PHE164 GLU165 ILE166 VAL167 GLU168 GLY169 LEU170 MET171 THR172 THR173 VAL174 HIS175 ALA176 VAL177 THR178 ALA179 THR180 GLN181 LYS182 THR183 VAL184 ASP185 GLY186 PRO187 SER188 ALA189 LYS190 ASP191 TRP192 ARG193 GLY194 GLY195 ARG196 GLY197 ALA198 ALA199 GLN200 ASN201 ILE202 ILE203 PRO204 SER205 SER206 THR207 GLY208 ALA209 ALA210 LYS211 ALA212 VAL213 GLY214 LYS215 VAL216 ILE217 PRO218 GLU219 LEU220 ASP221 GLY222 LYS223 LEU224 THR225 GLY226 MET227 ALA228 PHE229 ARG230 VAL231 PRO232 THR233 PRO234 ASP235 VAL236 SER237 VAL238 VAL239 ASP240 LEU241 THR242 VAL243 ARG244 LEU245 GLY246 LYS247 GLU248 CYS249 SER250 TYR251 ASP252 ASP253 ILE254 LYS255 ALA256 ALA257 MET258 LYS259 THR260 ALA261 SER262 GLU263 GLY264 PRO265 LEU266 GLN267 GLY268 PHE269 LEU270 GLY271 TYR272 THR273 GLU274 ASP275 ASP276 VAL277 VAL278 SER279 SER280 ASP281 PHE282 ILE283 GLY284 ASP285 ASN286 ARG287 SER288 SER289 ILE290 PHE291 ASP292 ALA293 LYS294 ALA295 GLY296 ILE297 GLN298 LEU299 SER300 LYS301 THR302 PHE303 VAL304 LYS305 VAL306 VAL307 SER308 TRP309 TYR310 ASP311 ASN312 GLU313 PHE314 GLY315 TYR316 SER317 GLN318 ARG319 VAL320 ILE321 ASP322 LEU323 LEU324 LYS325 HIS326 MET327 GLN328 LYS329 VAL330 ASP331 SER332 ALA333
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany