4GMJ - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF HUMAN NOT1 MIF4G DOMAIN CO-CRYSTALLIZED WITH CA
• Keywords: CCR4-NOT, MRNA DECAY, DEADENYLASE, TRANSCRIPTION, RNA BINDIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4GMJ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1	A	229	3764	0
2	Protein	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 7	B	264	4182	0
3	Protein	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1	C	225	3665	0
4	Protein	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 7	D	259	4139	0
5	Protein	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1	E	229	3727	0
6	Protein	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 7	F	260	4109	0
7	Ligand	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 7	B	5	0	18
8	Ligand	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 7	D	4	0	17
9	Ligand	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 7	F	5	0	18
10	Water			211	0	211
total				1691	23586	264

Proteins

Unit 1	HIS 1089 MET 1090 LEU 1091 GLU 1092 GLU 1093 ASN 1094 ILE 1095 GLN 1096 GLU 1097 LYS 1098 ILE 1099 ALA 1100 PHE 1101 ILE 1102 PHE 1103 ASN 1104 ASN 1105 LEU 1106 SER 1107 GLN 1108 SER 1109 ASN 1110 MET 1111 THR 1112 GLN 1113 LYS 1114 VAL 1115 GLU 1116 GLU 1117 LEU 1118 LYS 1119 GLU 1120 THR 1121 VAL 1122 LYS 1123 GLU 1124 GLU 1125 PHE 1126 MET 1127 PRO 1128 TRP 1129 VAL 1130 SER 1131 GLN 1132 TYR 1133 LEU 1134 VAL 1135 MET 1136 LYS 1137 ARG 1138 VAL 1139 SER 1140 ILE 1141 GLU 1142 PRO 1143 ASN 1144 PHE 1145 HIS 1146 SER 1147 LEU 1148 TYR 1149 SER 1150 ASN 1151 PHE 1152 LEU 1153 ASP 1154 THR 1155 LEU 1156 LYS 1157 ASN 1158 PRO 1159 GLU 1160 PHE 1161 ASN 1162 LYS 1163 MET 1164 VAL 1165 LEU 1166 ASN 1167 GLU 1168 THR 1169 TYR 1170 ARG 1171 ASN 1172 ILE 1173 LYS 1174 VAL 1175 LEU 1176 LEU 1177 THR 1178 SER 1179 ASP 1180 LYS 1181 ALA 1182 ALA 1183 ALA 1184 ASN 1185 PHE 1186 SER 1187 ASP 1188 ARG 1189 SER 1190 LEU 1191 LEU 1192 LYS 1193 ASN 1194 LEU 1195 GLY 1196 HIS 1197 TRP 1198 LEU 1199 GLY 1200 MET 1201 ILE 1202 THR 1203 LEU 1204 ALA 1205 LYS 1206 ASN 1207 LYS 1208 PRO 1209 ILE 1210 LEU 1211 HIS 1212 THR 1213 ASP 1214 LEU 1215 ASP 1216 VAL 1217 LYS 1218 SER 1219 LEU 1220 LEU 1221 LEU 1222 GLU 1223 ALA 1224 TYR 1225 VAL 1226 LYS 1227 GLY 1228 GLN 1229 GLN 1230 GLU 1231 LEU 1232 LEU 1233 TYR 1234 VAL 1235 VAL 1236 PRO 1237 PHE 1238 VAL 1239 ALA 1240 LYS 1241 VAL 1242 LEU 1243 GLU 1244 SER 1245 SER 1246 ILE 1247 ARG 1248 SER 1249 VAL 1250 VAL 1251 PHE 1252 ARG 1253 PRO 1254 PRO 1255 ASN 1256 PRO 1257 TRP 1258 THR 1259 MET 1260 ALA 1261 ILE 1262 MET 1263 ASN 1264 VAL 1265 LEU 1266 ALA 1267 GLU 1268 LEU 1269 HIS 1270 GLN 1271 GLU 1272 HIS 1273 ASP 1274 LEU 1275 LYS 1276 LEU 1277 ASN 1278 LEU 1279 LYS 1280 PHE 1281 GLU 1282 ILE 1283 GLU 1284 VAL 1285 LEU 1286 CYS 1287 LYS 1288 ASN 1289 LEU 1290 ALA 1291 LEU 1292 ASP 1293 ILE 1294 ASN 1295 GLU 1296 LEU 1297 LYS 1298 PRO 1299 GLY 1300 ASN 1301 LEU 1302 LEU 1303 LYS 1304 ASP 1305 LYS 1306 ASP 1307 ARG 1308 LEU 1309 LYS 1310 ASN 1311 LEU 1312 ASP 1313 GLU 1314 GLN 1315 LEU 1316 SER 1317
Unit 2	GLN 10 ARG 11 ILE 12 CYS 13 GLU 14 VAL 15 TRP 16 ALA 17 CYS 18 ASN 19 LEU 20 ASP 21 GLU 22 GLU 23 MET 24 LYS 25 LYS 26 ILE 27 ARG 28 GLN 29 VAL 30 ILE 31 ARG 32 LYS 33 TYR 34 ASN 35 TYR 36 VAL 37 ALA 38 MET 39 ASP 40 THR 41 GLU 42 PHE 43 PRO 44 GLY 45 VAL 46 VAL 47 ALA 48 ARG 49 PRO 50 ILE 51 GLY 52 GLU 53 PHE 54 ARG 55 SER 56 ASN 57 ALA 58 ASP 59 TYR 60 GLN 61 TYR 62 GLN 63 LEU 64 LEU 65 ARG 66 CYS 67 ASN 68 VAL 69 ASP 70 LEU 71 LEU 72 LYS 73 ILE 74 ILE 75 GLN 76 LEU 77 GLY 78 LEU 79 THR 80 PHE 81 MET 82 ASN 83 GLU 84 GLN 85 GLY 86 GLU 87 TYR 88 PRO 89 PRO 90 GLY 91 THR 92 SER 93 THR 94 TRP 95 GLN 96 PHE 97 ASN 98 PHE 99 LYS 100 PHE 101 ASN 102 LEU 103 THR 104 GLU 105 ASP 106 MET 107 TYR 108 ALA 109 GLN 110 ASP 111 SER 112 ILE 113 GLU 114 LEU 115 LEU 116 THR 117 THR 118 SER 119 GLY 120 ILE 121 GLN 122 PHE 123 LYS 124 LYS 125 HIS 126 GLU 127 GLU 128 GLU 129 GLY 130 ILE 131 GLU 132 THR 133 GLN 134 TYR 135 PHE 136 ALA 137 GLU 138 LEU 139 LEU 140 MET 141 THR 142 SER 143 GLY 144 VAL 145 VAL 146 LEU 147 CYS 148 GLU 149 GLY 150 VAL 151 LYS 152 TRP 153 LEU 154 SER 155 PHE 156 HIS 157 SER 158 GLY 159 TYR 160 ASP 161 PHE 162 GLY 163 TYR 164 LEU 165 ILE 166 LYS 167 ILE 168 LEU 169 THR 170 ASN 171 SER 172 ASN 173 LEU 174 PRO 175 GLU 176 GLU 177 GLU 178 LEU 179 ASP 180 PHE 181 PHE 182 GLU 183 ILE 184 LEU 185 ARG 186 LEU 187 PHE 188 PHE 189 PRO 190 VAL 191 ILE 192 TYR 193 ASP 194 VAL 195 LYS 196 TYR 197 LEU 198 MET 199 LYS 200 SER 201 CYS 202 LYS 203 ASN 204 LEU 205 LYS 206 GLY 207 GLY 208 LEU 209 GLN 210 GLU 211 VAL 212 ALA 213 GLU 214 GLN 215 LEU 216 GLU 217 LEU 218 GLU 219 ARG 220 ILE 221 GLY 222 PRO 223 GLN 224 HIS 225 GLN 226 ALA 227 GLY 228 SER 229 ASP 230 SER 231 LEU 232 LEU 233 THR 234 GLY 235 MET 236 ALA 237 PHE 238 PHE 239 LYS 240 MET 241 ARG 242 GLU 243 MET 244 PHE 245 PHE 246 GLU 247 ASP 248 HIS 249 ILE 250 ASP 251 ASP 252 ALA 253 LYS 254 TYR 255 CYS 256 GLY 257 HIS 258 LEU 259 TYR 260 GLY 261 LEU 262 GLY 263 SER 264 GLY 265 SER 266 GLY 274 ASN 275 ALA 276 TYR 277 GLU 278 GLU 279 GLU 280
Unit 3	GLU 1093 ASN 1094 ILE 1095 GLN 1096 GLU 1097 LYS 1098 ILE 1099 ALA 1100 PHE 1101 ILE 1102 PHE 1103 ASN 1104 ASN 1105 LEU 1106 SER 1107 GLN 1108 SER 1109 ASN 1110 MET 1111 THR 1112 GLN 1113 LYS 1114 VAL 1115 GLU 1116 GLU 1117 LEU 1118 LYS 1119 GLU 1120 THR 1121 VAL 1122 LYS 1123 GLU 1124 GLU 1125 PHE 1126 MET 1127 PRO 1128 TRP 1129 VAL 1130 SER 1131 GLN 1132 TYR 1133 LEU 1134 VAL 1135 MET 1136 LYS 1137 ARG 1138 VAL 1139 SER 1140 ILE 1141 GLU 1142 PRO 1143 ASN 1144 PHE 1145 HIS 1146 SER 1147 LEU 1148 TYR 1149 SER 1150 ASN 1151 PHE 1152 LEU 1153 ASP 1154 THR 1155 LEU 1156 LYS 1157 ASN 1158 PRO 1159 GLU 1160 PHE 1161 ASN 1162 LYS 1163 MET 1164 VAL 1165 LEU 1166 ASN 1167 GLU 1168 THR 1169 TYR 1170 ARG 1171 ASN 1172 ILE 1173 LYS 1174 VAL 1175 LEU 1176 LEU 1177 THR 1178 SER 1179 ASP 1180 LYS 1181 ALA 1182 ALA 1183 ALA 1184 ASN 1185 PHE 1186 SER 1187 ASP 1188 ARG 1189 SER 1190 LEU 1191 LEU 1192 LYS 1193 ASN 1194 LEU 1195 GLY 1196 HIS 1197 TRP 1198 LEU 1199 GLY 1200 MET 1201 ILE 1202 THR 1203 LEU 1204 ALA 1205 LYS 1206 ASN 1207 LYS 1208 PRO 1209 ILE 1210 LEU 1211 HIS 1212 THR 1213 ASP 1214 LEU 1215 ASP 1216 VAL 1217 LYS 1218 SER 1219 LEU 1220 LEU 1221 LEU 1222 GLU 1223 ALA 1224 TYR 1225 VAL 1226 LYS 1227 GLY 1228 GLN 1229 GLN 1230 GLU 1231 LEU 1232 LEU 1233 TYR 1234 VAL 1235 VAL 1236 PRO 1237 PHE 1238 VAL 1239 ALA 1240 LYS 1241 VAL 1242 LEU 1243 GLU 1244 SER 1245 SER 1246 ILE 1247 ARG 1248 SER 1249 VAL 1250 VAL 1251 PHE 1252 ARG 1253 PRO 1254 PRO 1255 ASN 1256 PRO 1257 TRP 1258 THR 1259 MET 1260 ALA 1261 ILE 1262 MET 1263 ASN 1264 VAL 1265 LEU 1266 ALA 1267 GLU 1268 LEU 1269 HIS 1270 GLN 1271 GLU 1272 HIS 1273 ASP 1274 LEU 1275 LYS 1276 LEU 1277 ASN 1278 LEU 1279 LYS 1280 PHE 1281 GLU 1282 ILE 1283 GLU 1284 VAL 1285 LEU 1286 CYS 1287 LYS 1288 ASN 1289 LEU 1290 ALA 1291 LEU 1292 ASP 1293 ILE 1294 ASN 1295 GLU 1296 LEU 1297 LYS 1298 PRO 1299 GLY 1300 ASN 1301 LEU 1302 LEU 1303 LYS 1304 ASP 1305 LYS 1306 ASP 1307 ARG 1308 LEU 1309 LYS 1310 ASN 1311 LEU 1312 ASP 1313 GLU 1314 GLN 1315 LEU 1316 SER 1317
Unit 4	ARG 11 ILE 12 CYS 13 GLU 14 VAL 15 TRP 16 ALA 17 CYS 18 ASN 19 LEU 20 ASP 21 GLU 22 GLU 23 MET 24 LYS 25 LYS 26 ILE 27 ARG 28 GLN 29 VAL 30 ILE 31 ARG 32 LYS 33 TYR 34 ASN 35 TYR 36 VAL 37 ALA 38 MET 39 ASP 40 THR 41 GLU 42 PHE 43 PRO 44 GLY 45 VAL 46 VAL 47 ALA 48 ARG 49 PRO 50 ILE 51 GLY 52 GLU 53 PHE 54 ARG 55 SER 56 ASN 57 ALA 58 ASP 59 TYR 60 GLN 61 TYR 62 GLN 63 LEU 64 LEU 65 ARG 66 CYS 67 ASN 68 VAL 69 ASP 70 LEU 71 LEU 72 LYS 73 ILE 74 ILE 75 GLN 76 LEU 77 GLY 78 LEU 79 THR 80 PHE 81 MET 82 ASN 83 GLU 84 GLN 85 GLY 86 GLU 87 TYR 88 PRO 89 PRO 90 GLY 91 THR 92 SER 93 THR 94 TRP 95 GLN 96 PHE 97 ASN 98 PHE 99 LYS 100 PHE 101 ASN 102 LEU 103 THR 104 GLU 105 ASP 106 MET 107 TYR 108 ALA 109 GLN 110 ASP 111 SER 112 ILE 113 GLU 114 LEU 115 LEU 116 THR 117 THR 118 SER 119 GLY 120 ILE 121 GLN 122 PHE 123 LYS 124 LYS 125 HIS 126 GLU 127 GLU 128 GLU 129 GLY 130 ILE 131 GLU 132 THR 133 GLN 134 TYR 135 PHE 136 ALA 137 GLU 138 LEU 139 LEU 140 MET 141 THR 142 SER 143 GLY 144 VAL 145 VAL 146 LEU 147 CYS 148 GLU 149 GLY 150 VAL 151 LYS 152 TRP 153 LEU 154 SER 155 PHE 156 HIS 157 SER 158 GLY 159 TYR 160 ASP 161 PHE 162 GLY 163 TYR 164 LEU 165 ILE 166 LYS 167 ILE 168 LEU 169 THR 170 ASN 171 SER 172 ASN 173 LEU 174 PRO 175 GLU 176 GLU 177 GLU 178 LEU 179 ASP 180 PHE 181 PHE 182 GLU 183 ILE 184 LEU 185 ARG 186 LEU 187 PHE 188 PHE 189 PRO 190 VAL 191 ILE 192 TYR 193 ASP 194 VAL 195 LYS 196 TYR 197 LEU 198 MET 199 LYS 200 SER 201 CYS 202 LYS 203 ASN 204 LEU 205 LYS 206 GLY 207 GLY 208 LEU 209 GLN 210 GLU 211 VAL 212 ALA 213 GLU 214 GLN 215 LEU 216 GLU 217 LEU 218 GLU 219 ARG 220 ILE 221 GLY 222 PRO 223 GLN 224 HIS 225 GLN 226 ALA 227 GLY 228 SER 229 ASP 230 SER 231 LEU 232 LEU 233 THR 234 GLY 235 MET 236 ALA 237 PHE 238 PHE 239 LYS 240 MET 241 ARG 242 GLU 243 MET 244 PHE 245 PHE 246 GLU 247 ASP 248 HIS 249 ILE 250 ASP 251 ASP 252 ALA 253 LYS 254 TYR 255 CYS 256 GLY 257 HIS 258 LEU 259 TYR 260 GLY 261 LEU 262 GLY 274 ASN 275 ALA 276 TYR 277 GLU 278 GLU 279 GLU 280
Unit 5	HIS 1089 MET 1090 LEU 1091 GLU 1092 GLU 1093 ASN 1094 ILE 1095 GLN 1096 GLU 1097 LYS 1098 ILE 1099 ALA 1100 PHE 1101 ILE 1102 PHE 1103 ASN 1104 ASN 1105 LEU 1106 SER 1107 GLN 1108 SER 1109 ASN 1110 MET 1111 THR 1112 GLN 1113 LYS 1114 VAL 1115 GLU 1116 GLU 1117 LEU 1118 LYS 1119 GLU 1120 THR 1121 VAL 1122 LYS 1123 GLU 1124 GLU 1125 PHE 1126 MET 1127 PRO 1128 TRP 1129 VAL 1130 SER 1131 GLN 1132 TYR 1133 LEU 1134 VAL 1135 MET 1136 LYS 1137 ARG 1138 VAL 1139 SER 1140 ILE 1141 GLU 1142 PRO 1143 ASN 1144 PHE 1145 HIS 1146 SER 1147 LEU 1148 TYR 1149 SER 1150 ASN 1151 PHE 1152 LEU 1153 ASP 1154 THR 1155 LEU 1156 LYS 1157 ASN 1158 PRO 1159 GLU 1160 PHE 1161 ASN 1162 LYS 1163 MET 1164 VAL 1165 LEU 1166 ASN 1167 GLU 1168 THR 1169 TYR 1170 ARG 1171 ASN 1172 ILE 1173 LYS 1174 VAL 1175 LEU 1176 LEU 1177 THR 1178 SER 1179 ASP 1180 LYS 1181 ALA 1182 ALA 1183 ALA 1184 ASN 1185 PHE 1186 SER 1187 ASP 1188 ARG 1189 SER 1190 LEU 1191 LEU 1192 LYS 1193 ASN 1194 LEU 1195 GLY 1196 HIS 1197 TRP 1198 LEU 1199 GLY 1200 MET 1201 ILE 1202 THR 1203 LEU 1204 ALA 1205 LYS 1206 ASN 1207 LYS 1208 PRO 1209 ILE 1210 LEU 1211 HIS 1212 THR 1213 ASP 1214 LEU 1215 ASP 1216 VAL 1217 LYS 1218 SER 1219 LEU 1220 LEU 1221 LEU 1222 GLU 1223 ALA 1224 TYR 1225 VAL 1226 LYS 1227 GLY 1228 GLN 1229 GLN 1230 GLU 1231 LEU 1232 LEU 1233 TYR 1234 VAL 1235 VAL 1236 PRO 1237 PHE 1238 VAL 1239 ALA 1240 LYS 1241 VAL 1242 LEU 1243 GLU 1244 SER 1245 SER 1246 ILE 1247 ARG 1248 SER 1249 VAL 1250 VAL 1251 PHE 1252 ARG 1253 PRO 1254 PRO 1255 ASN 1256 PRO 1257 TRP 1258 THR 1259 MET 1260 ALA 1261 ILE 1262 MET 1263 ASN 1264 VAL 1265 LEU 1266 ALA 1267 GLU 1268 LEU 1269 HIS 1270 GLN 1271 GLU 1272 HIS 1273 ASP 1274 LEU 1275 LYS 1276 LEU 1277 ASN 1278 LEU 1279 LYS 1280 PHE 1281 GLU 1282 ILE 1283 GLU 1284 VAL 1285 LEU 1286 CYS 1287 LYS 1288 ASN 1289 LEU 1290 ALA 1291 LEU 1292 ASP 1293 ILE 1294 ASN 1295 GLU 1296 LEU 1297 LYS 1298 PRO 1299 GLY 1300 ASN 1301 LEU 1302 LEU 1303 LYS 1304 ASP 1305 LYS 1306 ASP 1307 ARG 1308 LEU 1309 LYS 1310 ASN 1311 LEU 1312 ASP 1313 GLU 1314 GLN 1315 LEU 1316 SER 1317
Unit 6	ARG 11 ILE 12 CYS 13 GLU 14 VAL 15 TRP 16 ALA 17 CYS 18 ASN 19 LEU 20 ASP 21 GLU 22 GLU 23 MET 24 LYS 25 LYS 26 ILE 27 ARG 28 GLN 29 VAL 30 ILE 31 ARG 32 LYS 33 TYR 34 ASN 35 TYR 36 VAL 37 ALA 38 MET 39 ASP 40 THR 41 GLU 42 PHE 43 PRO 44 GLY 45 VAL 46 VAL 47 ALA 48 ARG 49 PRO 50 ILE 51 GLY 52 GLU 53 PHE 54 ARG 55 SER 56 ASN 57 ALA 58 ASP 59 TYR 60 GLN 61 TYR 62 GLN 63 LEU 64 LEU 65 ARG 66 CYS 67 ASN 68 VAL 69 ASP 70 LEU 71 LEU 72 LYS 73 ILE 74 ILE 75 GLN 76 LEU 77 GLY 78 LEU 79 THR 80 PHE 81 MET 82 ASN 83 GLU 84 GLN 85 GLY 86 GLU 87 TYR 88 PRO 89 PRO 90 GLY 91 THR 92 SER 93 THR 94 TRP 95 GLN 96 PHE 97 ASN 98 PHE 99 LYS 100 PHE 101 ASN 102 LEU 103 THR 104 GLU 105 ASP 106 MET 107 TYR 108 ALA 109 GLN 110 ASP 111 SER 112 ILE 113 GLU 114 LEU 115 LEU 116 THR 117 THR 118 SER 119 GLY 120 ILE 121 GLN 122 PHE 123 LYS 124 LYS 125 HIS 126 GLU 127 GLU 128 GLU 129 GLY 130 ILE 131 GLU 132 THR 133 GLN 134 TYR 135 PHE 136 ALA 137 GLU 138 LEU 139 LEU 140 MET 141 THR 142 SER 143 GLY 144 VAL 145 VAL 146 LEU 147 CYS 148 GLU 149 GLY 150 VAL 151 LYS 152 TRP 153 LEU 154 SER 155 PHE 156 HIS 157 SER 158 GLY 159 TYR 160 ASP 161 PHE 162 GLY 163 TYR 164 LEU 165 ILE 166 LYS 167 ILE 168 LEU 169 THR 170 ASN 171 SER 172 ASN 173 LEU 174 PRO 175 GLU 176 GLU 177 GLU 178 LEU 179 ASP 180 PHE 181 PHE 182 GLU 183 ILE 184 LEU 185 ARG 186 LEU 187 PHE 188 PHE 189 PRO 190 VAL 191 ILE 192 TYR 193 ASP 194 VAL 195 LYS 196 TYR 197 LEU 198 MET 199 LYS 200 SER 201 CYS 202 LYS 203 ASN 204 LEU 205 LYS 206 GLY 207 GLY 208 LEU 209 GLN 210 GLU 211 VAL 212 ALA 213 GLU 214 GLN 215 LEU 216 GLU 217 LEU 218 GLU 219 ARG 220 ILE 221 GLY 222 PRO 223 GLN 224 HIS 225 GLN 226 ALA 227 GLY 228 SER 229 ASP 230 SER 231 LEU 232 LEU 233 THR 234 GLY 235 MET 236 ALA 237 PHE 238 PHE 239 LYS 240 MET 241 ARG 242 GLU 243 MET 244 PHE 245 PHE 246 GLU 247 ASP 248 HIS 249 ILE 250 ASP 251 ASP 252 ALA 253 LYS 254 TYR 255 CYS 256 GLY 257 HIS 258 LEU 259 TYR 260 GLY 261 LEU 262 GLY 263 GLY 274 ASN 275 ALA 276 TYR 277 GLU 278 GLU 279 GLU 280

Ligands

Unit 7	MG 301 MG 302 GOL 303 CL 304 MG 305
Unit 8	MG 301 MG 302 GOL 303 CL 304
Unit 9	MG 301 MG 302 GOL 303 CL 304 MG 305