Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL BASIS FOR DSRNA DUPLEX BACKBONE RECOGNITION BY MD
Keywords MDA5, DSRNA, ANTI-VIRAL SIGNALING, RIG-I, MAVS, OLIGOMERIZAT HELICASE, ATPASE, FILAMENT FORMATION, RNA BINDING PROTEIN-R COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4GL2     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 617 9807 0
2  Protein    B 615 9476 0
3  RNA    C 12 380 0
4  RNA    E 12 380 0
5  RNA    F 12 394 0
6  RNA    D 12 394 0
7  Ligand    A 2 0 32
8  Ligand    B 2 0 32
total       1284 20831 64
Proteins
Unit 1 LEU306 GLN307 LEU308 ARG309 PRO310 TYR311 GLN312 MET313 GLU314 VAL315 ALA316 GLN317 PRO318 ALA319 LEU320 GLU321 GLY322 LYS323 ASN324 ILE325 ILE326 ILE327 CYS328 LEU329 PRO330 THR331 GLY332 CYS333 GLY334 LYS335 THR336 ARG337 VAL338 ALA339 VAL340 TYR341 ILE342 ALA343 LYS344 ASP345 HIS346 LEU347 ASP348 LYS349 LYS350 LYS351 LYS352 ALA353 SER354 GLU355 PRO356 GLY357 LYS358 VAL359 ILE360 VAL361 LEU362 VAL363 ASN364 LYS365 VAL366 LEU367 LEU368 VAL369 GLU370 GLN371 LEU372 PHE373 ARG374 LYS375 GLU376 PHE377 GLN378 PRO379 PHE380 LEU381 LYS382 LYS383 TRP384 TYR385 ARG386 VAL387 ILE388 GLY389 LEU390 SER391 LEU396 LYS397 ILE398 SER399 PHE400 PRO401 GLU402 VAL403 VAL404 LYS405 SER406 CYS407 ASP408 ILE409 ILE410 ILE411 SER412 THR413 ALA414 GLN415 ILE416 LEU417 GLU418 ASN419 SER420 LEU421 LEU422 GLY431 VAL432 GLN433 LEU434 SER435 ASP436 PHE437 SER438 LEU439 ILE440 ILE441 ILE442 ASP443 GLU444 CYS445 HIS446 HIS447 THR448 ASN449 LYS450 GLU451 ALA452 VAL453 TYR454 ASN455 ASN456 ILE457 MET458 ARG459 HIS460 TYR461 LEU462 MET463 GLN464 LYS465 LEU466 LYS467 ASN468 ASN469 ARG470 LEU471 LYS472 LYS473 VAL478 ILE479 PRO480 LEU481 PRO482 GLN483 ILE484 LEU485 GLY486 LEU487 THR488 ALA489 SER490 PRO491 GLY492 VAL493 GLY494 GLY495 ALA496 THR497 LYS498 GLN499 ALA500 LYS501 ALA502 GLU503 GLU504 HIS505 ILE506 LEU507 LYS508 LEU509 CYS510 ALA511 ASN512 LEU513 ASP514 ALA515 PHE516 THR517 ILE518 LYS519 THR520 VAL521 LYS522 GLU523 ASN524 LEU525 ASP526 GLN527 LEU528 LYS529 ASN530 GLN531 ILE532 GLN533 GLU534 PRO535 CYS536 LYS537 LYS538 PHE539 ALA540 ILE541 ALA542 ASP543 PRO549 PHE550 LYS551 GLU552 LYS553 LEU554 LEU555 GLU556 ILE557 MET558 THR559 ARG560 ILE561 GLN562 THR563 TYR564 CYS565 GLN566 MET567 SER568 PRO569 MET570 SER571 ASP572 PHE573 GLY574 THR575 GLN576 PRO577 TYR578 GLU579 GLN580 TRP581 ALA582 ILE583 GLN584 MET585 GLU586 LYS587 LYS588 ALA589 ALA590 LYS591 GLU592 GLY593 ASN594 ARG595 LYS596 GLU597 ARG598 VAL599 CYS600 ALA601 GLU602 HIS603 LEU604 ARG605 LYS606 TYR607 ASN608 GLU609 ALA610 LEU611 GLN612 ILE613 ASN614 ASP615 THR616 ILE617 ARG618 MET619 ILE620 ASP621 ALA622 TYR623 THR624 HIS625 LEU626 GLU627 THR628 PHE629 TYR630 ASN631 GLU632 GLU633 LYS634 ASP635 LYS636 LYS637 PHE638 LEU669 ASP670 GLU671 THR672 ASP673 ARG674 PHE675 LEU676 MET677 THR678 LEU679 PHE680 PHE681 GLU682 ASN683 ASN684 LYS685 MET686 LEU687 LYS688 ARG689 LEU690 ALA691 GLU692 ASN693 PRO694 GLU699 LYS700 LEU701 THR702 LYS703 LEU704 ARG705 ASN706 THR707 ILE708 MET709 GLU710 GLN711 TYR712 THR713 ARG714 THR715 GLU716 GLU717 SER718 ALA719 ARG720 GLY721 ILE722 ILE723 PHE724 THR725 LYS726 THR727 ARG728 GLN729 SER730 ALA731 TYR732 ALA733 LEU734 SER735 GLN736 TRP737 ILE738 THR739 GLU740 ASN741 GLU742 LYS743 PHE744 ALA745 ALA751 HIS752 HIS753 LEU754 ILE755 GLY756 ALA757 GLY758 HIS759 SER760 SER761 GLU762 PHE763 LYS764 PRO765 MET766 THR767 GLN768 ASN769 GLU770 GLN771 LYS772 GLU773 VAL774 ILE775 SER776 LYS777 PHE778 ARG779 THR780 ASN784 LEU785 LEU786 ILE787 ALA788 THR789 THR790 VAL791 ALA792 GLU793 GLU794 GLY795 LEU796 ASP797 ILE798 LYS799 GLU800 CYS801 ASN802 ILE803 VAL804 ILE805 ARG806 TYR807 GLY808 LEU809 VAL810 THR811 ASN812 GLU813 ILE814 ALA815 MET816 VAL817 GLN818 ALA819 ARG820 GLY821 ARG822 ALA823 ARG824 ALA825 ASP826 GLU827 SER828 THR829 TYR830 VAL831 LEU832 VAL833 ALA834 HIS835 SER836 GLY837 SER838 GLY839 VAL840 ILE841 GLU842 ARG843 GLU844 THR845 VAL846 ASN847 ASP848 PHE849 ARG850 GLU851 LYS852 MET853 MET854 TYR855 LYS856 ALA857 ILE858 HIS859 CYS860 VAL861 GLN862 ASN863 MET864 LYS865 PRO866 GLU867 GLU868 TYR869 ALA870 HIS871 LYS872 ILE873 LEU874 GLU875 LEU876 GLN877 MET878 GLN879 SER880 ILE881 MET882 GLU883 LYS884 LYS885 MET886 LYS887 THR888 LYS889 PRO900 SER901 LEU902 ILE903 THR904 PHE905 LEU906 CYS907 LYS908 ASN909 CYS910 SER911 VAL912 LEU913 ALA914 CYS915 SER916 GLY917 GLU918 ASP919 ILE920 HIS921 VAL922 ILE923 GLU924 LYS925 MET926 HIS927 HIS928 VAL929 ASN930 MET931 THR932 PRO933 GLU934 PHE935 LYS936 GLU937 LEU938 TYR939 ILE940 VAL941 ARG942 GLY958 GLU959 ILE960 ILE961 CYS962 LYS963 CYS964 GLY965 GLN966 ALA967 TRP968 GLY969 THR970 MET971 MET972 VAL973 HIS974 LYS975 LEU979 PRO980 CYS981 LEU982 LYS983 ILE984 ARG985 ASN986 PHE987 VAL988 VAL989 VAL990 PHE991 LYS992 ASN993 ASN994 SER995 THR996 LYS997 LYS998 GLN999 TYR1000 LYS1001 LYS1002 TRP1003 VAL1004 GLU1005 LEU1006 PRO1007 ILE1008 THR1009 PHE1010 PRO1011 ASN1012 LEU1013
Unit 2 LEU306 GLN307 LEU308 ARG309 PRO310 TYR311 GLN312 MET313 GLU314 VAL315 ALA316 GLN317 PRO318 ALA319 LEU320 GLU321 GLY322 LYS323 ASN324 ILE325 ILE326 ILE327 CYS328 LEU329 PRO330 THR331 GLY332 CYS333 GLY334 LYS335 THR336 ARG337 VAL338 ALA339 VAL340 TYR341 ILE342 ALA343 LYS344 ASP345 HIS346 LEU347 ASP348 LYS349 LYS350 LYS351 LYS352 ALA353 SER354 GLU355 PRO356 GLY357 LYS358 VAL359 ILE360 VAL361 LEU362 VAL363 ASN364 LYS365 VAL366 LEU367 LEU368 VAL369 GLU370 GLN371 LEU372 PHE373 ARG374 LYS375 GLU376 PHE377 GLN378 PRO379 PHE380 LEU381 LYS382 LYS383 TRP384 TYR385 ARG386 VAL387 ILE388 GLY389 LEU390 SER391 GLY392 LEU396 LYS397 ILE398 SER399 PHE400 PRO401 GLU402 VAL403 VAL404 LYS405 SER406 CYS407 ASP408 ILE409 ILE410 ILE411 SER412 THR413 ALA414 GLN415 ILE416 LEU417 GLU418 ASN419 SER420 LEU421 LEU422 ASN423 GLY431 VAL432 GLN433 LEU434 SER435 ASP436 PHE437 SER438 LEU439 ILE440 ILE441 ILE442 ASP443 GLU444 CYS445 HIS446 HIS447 THR448 ASN449 LYS450 GLU451 ALA452 VAL453 TYR454 ASN455 ASN456 ILE457 MET458 ARG459 HIS460 TYR461 LEU462 MET463 GLN464 LYS465 LEU466 LYS467 ASN468 ASN469 ARG470 LEU471 LYS472 LYS473 VAL478 ILE479 PRO480 LEU481 PRO482 GLN483 ILE484 LEU485 GLY486 LEU487 THR488 ALA489 SER490 PRO491 GLY492 VAL493 GLY494 GLY495 ALA496 THR497 LYS498 GLN499 ALA500 LYS501 ALA502 GLU503 GLU504 HIS505 ILE506 LEU507 LYS508 LEU509 CYS510 ALA511 ASN512 LEU513 ASP514 ALA515 PHE516 THR517 ILE518 LYS519 THR520 VAL521 LYS522 GLU523 ASN524 LEU525 ASP526 GLN527 LEU528 LYS529 ASN530 GLN531 ILE532 GLN533 GLU534 PRO535 CYS536 LYS537 LYS538 PHE539 ALA540 ILE541 PRO549 PHE550 LYS551 GLU552 LYS553 LEU554 LEU555 GLU556 ILE557 MET558 THR559 ARG560 ILE561 GLN562 THR563 TYR564 CYS565 GLN566 MET567 SER568 PRO569 MET570 SER571 ASP572 PHE573 GLY574 THR575 GLN576 PRO577 TYR578 GLU579 GLN580 TRP581 ALA582 ILE583 GLN584 MET585 GLU586 LYS587 LYS588 ALA589 ALA590 LYS591 GLU592 GLY593 ASN594 ARG595 LYS596 GLU597 ARG598 VAL599 CYS600 ALA601 GLU602 HIS603 LEU604 ARG605 LYS606 TYR607 ASN608 GLU609 ALA610 LEU611 GLN612 ILE613 ASN614 ASP615 THR616 ILE617 ARG618 MET619 ILE620 ASP621 ALA622 TYR623 THR624 HIS625 LEU626 GLU627 THR628 PHE629 TYR630 ASN631 GLU632 GLU633 LYS634 ASP635 LYS636 LYS637 PHE638 LEU669 ASP670 GLU671 THR672 ASP673 ARG674 PHE675 LEU676 MET677 THR678 LEU679 PHE680 PHE681 GLU682 ASN683 ASN684 LYS685 MET686 LEU687 LYS688 ARG689 LEU690 ALA691 GLU692 ASN693 PRO694 ASN698 GLU699 LYS700 LEU701 THR702 LYS703 LEU704 ARG705 ASN706 THR707 ILE708 MET709 GLU710 GLN711 TYR712 THR713 ARG714 THR715 GLU716 GLU717 SER718 ALA719 ARG720 GLY721 ILE722 ILE723 PHE724 THR725 LYS726 THR727 ARG728 GLN729 SER730 ALA731 TYR732 ALA733 LEU734 SER735 GLN736 TRP737 ILE738 THR739 GLU740 ASN741 GLU742 LYS743 PHE744 ALA745 GLU746 VAL747 LYS750 ALA751 HIS752 HIS753 LEU754 ILE755 GLY756 ALA757 GLY758 HIS759 SER760 SER761 GLU762 PHE763 LYS764 PRO765 MET766 THR767 GLN768 ASN769 GLU770 GLN771 LYS772 GLU773 VAL774 ILE775 SER776 LYS777 PHE778 ARG779 THR780 GLY781 LYS782 LEU785 LEU786 ILE787 ALA788 THR789 THR790 VAL791 ALA792 GLU793 GLU794 GLY795 LEU796 ASP797 ILE798 LYS799 GLU800 CYS801 ASN802 ILE803 VAL804 ILE805 ARG806 TYR807 GLY808 LEU809 VAL810 THR811 ASN812 GLU813 ILE814 ALA815 MET816 VAL817 GLN818 ALA819 ARG820 GLY821 ASP826 GLU827 SER828 THR829 TYR830 VAL831 LEU832 VAL833 ALA834 HIS835 SER836 GLY837 SER838 GLY839 VAL840 ILE841 GLU842 ARG843 GLU844 THR845 VAL846 ASN847 ASP848 PHE849 ARG850 GLU851 LYS852 MET853 MET854 TYR855 LYS856 ALA857 ILE858 HIS859 CYS860 VAL861 GLN862 ASN863 MET864 LYS865 PRO866 GLU867 GLU868 TYR869 ALA870 HIS871 LYS872 ILE873 LEU874 GLU875 LEU876 GLN877 MET878 GLN879 SER880 ILE881 MET882 GLU883 LYS884 LYS885 MET886 LYS887 PRO900 SER901 LEU902 ILE903 THR904 PHE905 LEU906 CYS907 LYS908 ASN909 CYS910 SER911 VAL912 LEU913 ALA914 CYS915 SER916 GLY917 GLU918 ASP919 ILE920 HIS921 VAL922 ILE923 GLU924 LYS925 MET926 HIS927 HIS928 VAL929 ASN930 MET931 THR932 PRO933 GLU934 PHE935 LYS936 GLU937 LEU938 TYR939 ILE940 VAL941 ARG942 GLY958 GLU959 ILE960 ILE961 CYS962 LYS963 CYS964 GLY965 GLN966 ALA967 TRP968 GLY969 THR970 MET971 MET972 VAL973 HIS974 LEU979 PRO980 CYS981 LEU982 LYS983 ILE984 ARG985 ASN986 PHE987 VAL988 VAL989 VAL990 PHE991 LYS992 ASN993 ASN994 SER995 THR996 LYS997 LYS998 GLN999 TYR1000 LYS1001 LYS1002 TRP1003 VAL1004 GLU1005 LEU1006 PRO1007 ILE1008 THR1009 PHE1010 PRO1011 ASN1012 LEU1013
Nucleic acids
Unit 3 A1 U2 C3 C4 G5 C6 G7 G8 C9 C10 C11 U12
Unit 4 A1 U2 C3 C4 G5 C6 G7 G8 C9 C10 C11 U12
Unit 5 A1 G2 G3 G4 C5 C6 G7 C8 G9 G10 A11 U12
Unit 6 A1 G2 G3 G4 C5 C6 G7 C8 G9 G10 A11 U12
Ligands
Unit 7 ANP1101 ZN1102
Unit 8 ANP1101 ZN1102
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany