4GDL - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF HUMAN ATG12~ATG5 CONJUGATE IN COMPLEX W TERMINAL FRAGMENT OF ATG16L1
• Keywords: PROTEIN-PROTEIN CONJUGATE, PROTEIN-PROTEIN COMPLEX, UBIQUITI PROTEIN, AUTOPHAGY, E3 LIGASE, UBIQUITIN-LIKE FOLD, STRUCTU PROTEIN, ISOPEPTIDE BOND, CYTOPLASM AND AUTOPHAGOSOMAL MEMB PROTEIN BINDING
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4GDL	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	UBIQUITIN-LIKE PROTEIN ATG12	A	88	704	0
2	Protein	AUTOPHAGY PROTEIN 5	B	265	2211	0
3	Protein	AUTOPHAGY-RELATED PROTEIN 16-1	C	34	311	0
4	Ligand	AUTOPHAGY PROTEIN 5	B	1	0	1
total				388	3226	1

Proteins

Unit 1	LYS 53 LYS 54 ILE 55 ASP 56 ILE 57 LEU 58 LEU 59 LYS 60 ALA 61 VAL 62 GLY 63 ASP 64 THR 65 PRO 66 ILE 67 MET 68 LYS 69 THR 70 LYS 71 LYS 72 TRP 73 ALA 74 VAL 75 GLU 76 ARG 77 THR 78 ARG 79 THR 80 ILE 81 GLN 82 GLY 83 LEU 84 ILE 85 ASP 86 PHE 87 ILE 88 LYS 89 LYS 90 PHE 91 LEU 92 LYS 93 LEU 94 VAL 95 ALA 96 SER 97 GLU 98 GLN 99 LEU 100 PHE 101 ILE 102 TYR 103 VAL 104 ASN 105 GLN 106 SER 107 PHE 108 ALA 109 PRO 110 SER 111 PRO 112 ASP 113 GLN 114 GLU 115 VAL 116 GLY 117 THR 118 LEU 119 TYR 120 GLU 121 CYS 122 PHE 123 GLY 124 SER 125 ASP 126 GLY 127 LYS 128 LEU 129 VAL 130 LEU 131 HIS 132 TYR 133 CYS 134 LYS 135 SER 136 GLN 137 ALA 138 TRP 139 GLY 140
Unit 2	ASP 3 ASP 4 LYS 5 ASP 6 VAL 7 LEU 8 ARG 9 ASP 10 VAL 11 TRP 12 PHE 13 GLY 14 ARG 15 ILE 16 PRO 17 THR 18 CYS 19 PHE 20 THR 21 LEU 22 TYR 23 GLN 24 ASP 25 GLU 26 ILE 27 THR 28 GLU 29 ARG 30 GLU 31 ALA 32 GLU 33 PRO 34 TYR 35 TYR 36 LEU 37 LEU 38 LEU 39 PRO 40 ARG 41 VAL 42 SER 43 TYR 44 LEU 45 THR 46 LEU 47 VAL 48 THR 49 ASP 50 LYS 51 VAL 52 LYS 53 LYS 54 HIS 55 PHE 56 GLN 57 LYS 58 VAL 59 MET 60 ARG 61 GLN 62 GLU 63 ASP 64 ILE 65 SER 66 GLU 67 ILE 68 TRP 69 PHE 70 GLU 71 TYR 72 GLU 73 GLY 74 THR 75 PRO 76 LEU 77 LYS 78 TRP 79 HIS 80 TYR 81 PRO 82 ILE 83 GLY 84 LEU 85 LEU 86 PHE 87 ASP 88 LEU 89 LEU 90 ALA 91 SER 92 SER 93 SER 94 ALA 95 LEU 96 PRO 97 TRP 98 ASN 99 ILE 100 THR 101 VAL 102 HIS 103 PHE 104 LYS 105 SER 106 PHE 107 PRO 108 GLU 109 LYS 110 ASP 111 LEU 112 LEU 113 HIS 114 CYS 115 PRO 116 SER 117 LYS 118 ASP 119 ALA 120 ILE 121 GLU 122 ALA 123 HIS 124 PHE 125 MET 126 SER 127 CYS 128 MET 129 LYS 130 GLU 131 ALA 132 ASP 133 ALA 134 LEU 135 LYS 136 HIS 137 LYS 138 SER 139 GLN 140 VAL 141 ILE 142 ASN 143 GLU 144 MET 145 GLN 146 LYS 147 LYS 148 ASP 149 HIS 150 LYS 151 GLN 152 LEU 153 TRP 154 MET 155 GLY 156 LEU 157 GLN 158 ASN 159 ASP 160 ARG 161 PHE 162 ASP 163 GLN 164 PHE 165 TRP 166 ALA 167 ILE 168 ASN 169 ARG 170 LYS 171 LEU 172 MET 173 GLU 174 TYR 175 PRO 176 ALA 177 GLU 178 GLU 179 ASN 180 GLY 181 PHE 182 ARG 183 TYR 184 ILE 185 PRO 186 PHE 187 ARG 188 ILE 189 TYR 190 GLN 191 THR 192 THR 193 THR 194 GLU 195 ARG 196 PRO 197 PHE 198 ILE 199 GLN 200 LYS 201 LEU 202 PHE 203 ARG 204 PRO 205 VAL 206 ALA 207 ALA 208 ASP 209 GLY 210 GLN 211 LEU 212 HIS 213 THR 214 LEU 215 GLY 216 ASP 217 LEU 218 LEU 219 LYS 220 GLU 221 VAL 222 CYS 223 PRO 224 SER 225 ALA 226 ILE 227 LYS 235 ASN 236 GLN 237 VAL 238 MET 239 ILE 240 HIS 241 GLY 242 ILE 243 GLU 244 PRO 245 MET 246 LEU 247 GLU 248 THR 249 PRO 250 LEU 251 GLN 252 TRP 253 LEU 254 SER 255 GLU 256 HIS 257 LEU 258 SER 259 TYR 260 PRO 261 ASP 262 ASN 263 PHE 264 LEU 265 HIS 266 ILE 267 SER 268 ILE 269 ILE 270 PRO 271 GLN 272 PRO 273 THR 274
Unit 3	MET 10 PRO 11 ARG 12 TRP 13 LYS 14 ARG 15 HIS 16 ILE 17 SER 18 GLU 19 GLN 20 LEU 21 ARG 22 ARG 23 ARG 24 ASP 25 ARG 26 LEU 27 GLN 28 ARG 29 GLN 30 ALA 31 PHE 32 GLU 33 GLU 34 ILE 35 ILE 36 LEU 37 GLN 38 TYR 39 ASN 40 LYS 41 LEU 42 LEU 43

Ligands

Unit 4

NA 301