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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A GLUCARATE DEHYDRATASE RELATED PROTEIN ACTINOBACILLUS SUCCINOGENES, TARGET EFI-502312, WITH SODIUM SULFATE BOUND, ORDERED LOOP
Keywords ENOLASE, PUTATIVE GLUCARATE DEHYDRATASE, ENZYME FUNCTION INI EFI, STRUCTURAL GENOMICS, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4G8T     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLUCARATE DEHYDRATASE  A 441 3424 0
2  Protein   GLUCARATE DEHYDRATASE  B 441 3424 0
3  Protein   GLUCARATE DEHYDRATASE  C 441 3424 0
4  Protein   GLUCARATE DEHYDRATASE  D 441 3424 0
5  Ligand   GLUCARATE DEHYDRATASE  A 5 0 26
6  Ligand   GLUCARATE DEHYDRATASE  B 7 0 38
7  Ligand   GLUCARATE DEHYDRATASE  C 4 0 20
8  Ligand   GLUCARATE DEHYDRATASE  D 3 0 14
9 Water     1973 0 1973
total       3756 13696 2071
Proteins
Unit 1 SER2 THR3 PRO4 ILE5 ILE6 THR7 GLU8 MET9 GLN10 VAL11 ILE12 PRO13 VAL14 ALA15 GLY16 HIS17 ASP18 SER19 MET20 LEU21 LEU22 ASN23 LEU24 SER25 GLY26 ALA27 HIS28 SER29 PRO30 TYR31 PHE32 THR33 ARG34 ASN35 ILE36 VAL37 ILE38 LEU39 LYS40 ASP41 ASN42 SER43 GLY44 ASN45 THR46 GLY47 VAL48 GLY49 GLU50 VAL51 PRO52 GLY53 GLY54 GLU55 LYS56 ILE57 ARG58 GLN59 THR60 LEU61 GLU62 ASP63 ALA64 LYS65 PRO66 LEU67 VAL68 ILE69 GLY70 LYS71 THR72 LEU73 GLY74 GLU75 TYR76 LYS77 ASN78 VAL79 MET80 ASN81 THR82 VAL83 ARG84 GLN85 THR86 PHE87 ASN88 ASP89 HIS90 ASP91 ALA92 GLY93 GLY94 ARG95 GLY96 LEU97 GLN98 THR99 PHE100 ASP101 LEU102 ARG103 THR104 THR105 ILE106 HIS107 VAL108 VAL109 THR110 ALA111 ILE112 GLU113 ALA114 ALA115 MET116 LEU117 ASP118 LEU119 LEU120 GLY121 GLN122 PHE123 LEU124 GLY125 VAL126 THR127 VAL128 ALA129 SER130 LEU131 LEU132 GLY133 ASP134 GLY135 GLN136 GLN137 ARG138 ASP139 ALA140 VAL141 GLU142 MET143 LEU144 GLY145 TYR146 LEU147 PHE148 PHE149 ILE150 GLY151 ASP152 ARG153 LYS154 LYS155 THR156 THR157 LEU158 ALA159 TYR160 GLN161 ASN162 GLN163 GLU164 ASN165 ASP166 PRO167 CYS168 ASP169 TRP170 TYR171 ARG172 VAL173 ARG174 HIS175 GLU176 GLU177 ALA178 MET179 THR180 PRO181 GLU182 SER183 VAL184 VAL185 ARG186 LEU187 ALA188 GLU189 ALA190 ALA191 TYR192 GLU193 LYS194 TYR195 GLY196 PHE197 ASN198 ASP199 PHE200 LYS201 LEU202 LYS203 GLY204 GLY205 VAL206 LEU207 ASP208 GLY209 PHE210 GLU211 GLU212 ALA213 GLU214 ALA215 VAL216 THR217 ALA218 LEU219 ALA220 LYS221 ARG222 PHE223 PRO224 ASP225 ALA226 ARG227 ILE228 THR229 LEU230 ASP231 PRO232 ASN233 GLY234 ALA235 TRP236 SER237 LEU238 ASP239 GLU240 ALA241 VAL242 LYS243 ILE244 GLY245 LYS246 GLN247 LEU248 LYS249 GLY250 VAL251 LEU252 ALA253 TYR254 ALA255 GLU256 ASP257 PRO258 CYS259 GLY260 ALA261 GLU262 GLN263 GLY264 TYR265 SER266 GLY267 ARG268 GLU269 ILE270 MET271 ALA272 GLU273 PHE274 ARG275 ARG276 ALA277 THR278 GLY279 LEU280 PRO281 THR282 ALA283 THR284 ASN285 MET286 ILE287 ALA288 THR289 ASP290 TRP291 ARG292 GLN293 MET294 GLY295 HIS296 THR297 ILE298 SER299 LEU300 GLN301 SER302 VAL303 ASP304 ILE305 PRO306 LEU307 ALA308 ASP309 PRO310 HIS311 PHE312 TRP313 THR314 MET315 GLN316 GLY317 SER318 ILE319 ARG320 VAL321 ALA322 GLN323 MET324 CYS325 HIS326 GLU327 TRP328 GLY329 LEU330 THR331 TRP332 GLY333 SER334 HIS335 SER336 ASN337 ASN338 HIS339 PHE340 ASP341 ILE342 SER343 LEU344 ALA345 MET346 PHE347 THR348 HIS349 VAL350 ALA351 ALA352 ALA353 ALA354 PRO355 GLY356 ASP357 ILE358 THR359 ALA360 ILE361 ASP362 THR363 HIS364 TRP365 ILE366 TRP367 GLN368 GLU369 GLY370 ASN371 GLN372 ARG373 LEU374 THR375 LYS376 GLU377 PRO378 PHE379 GLN380 ILE381 LYS382 GLY383 GLY384 LEU385 VAL386 GLU387 VAL388 PRO389 LYS390 LYS391 PRO392 GLY393 LEU394 GLY395 VAL396 GLU397 LEU398 ASP399 MET400 ASP401 GLN402 VAL403 MET404 LYS405 ALA406 ASN407 GLU408 LEU409 TYR410 LYS411 SER412 MET413 GLY414 LEU415 GLY416 ALA417 ARG418 ASP419 ASP420 ALA421 MET422 ALA423 MET424 GLN425 PHE426 LEU427 ILE428 PRO429 GLY430 TRP431 LYS432 PHE433 ASP434 ASN435 LYS436 LYS437 PRO438 CYS439 LEU440 VAL441 ARG442
Unit 2 SER2 THR3 PRO4 ILE5 ILE6 THR7 GLU8 MET9 GLN10 VAL11 ILE12 PRO13 VAL14 ALA15 GLY16 HIS17 ASP18 SER19 MET20 LEU21 LEU22 ASN23 LEU24 SER25 GLY26 ALA27 HIS28 SER29 PRO30 TYR31 PHE32 THR33 ARG34 ASN35 ILE36 VAL37 ILE38 LEU39 LYS40 ASP41 ASN42 SER43 GLY44 ASN45 THR46 GLY47 VAL48 GLY49 GLU50 VAL51 PRO52 GLY53 GLY54 GLU55 LYS56 ILE57 ARG58 GLN59 THR60 LEU61 GLU62 ASP63 ALA64 LYS65 PRO66 LEU67 VAL68 ILE69 GLY70 LYS71 THR72 LEU73 GLY74 GLU75 TYR76 LYS77 ASN78 VAL79 MET80 ASN81 THR82 VAL83 ARG84 GLN85 THR86 PHE87 ASN88 ASP89 HIS90 ASP91 ALA92 GLY93 GLY94 ARG95 GLY96 LEU97 GLN98 THR99 PHE100 ASP101 LEU102 ARG103 THR104 THR105 ILE106 HIS107 VAL108 VAL109 THR110 ALA111 ILE112 GLU113 ALA114 ALA115 MET116 LEU117 ASP118 LEU119 LEU120 GLY121 GLN122 PHE123 LEU124 GLY125 VAL126 THR127 VAL128 ALA129 SER130 LEU131 LEU132 GLY133 ASP134 GLY135 GLN136 GLN137 ARG138 ASP139 ALA140 VAL141 GLU142 MET143 LEU144 GLY145 TYR146 LEU147 PHE148 PHE149 ILE150 GLY151 ASP152 ARG153 LYS154 LYS155 THR156 THR157 LEU158 ALA159 TYR160 GLN161 ASN162 GLN163 GLU164 ASN165 ASP166 PRO167 CYS168 ASP169 TRP170 TYR171 ARG172 VAL173 ARG174 HIS175 GLU176 GLU177 ALA178 MET179 THR180 PRO181 GLU182 SER183 VAL184 VAL185 ARG186 LEU187 ALA188 GLU189 ALA190 ALA191 TYR192 GLU193 LYS194 TYR195 GLY196 PHE197 ASN198 ASP199 PHE200 LYS201 LEU202 LYS203 GLY204 GLY205 VAL206 LEU207 ASP208 GLY209 PHE210 GLU211 GLU212 ALA213 GLU214 ALA215 VAL216 THR217 ALA218 LEU219 ALA220 LYS221 ARG222 PHE223 PRO224 ASP225 ALA226 ARG227 ILE228 THR229 LEU230 ASP231 PRO232 ASN233 GLY234 ALA235 TRP236 SER237 LEU238 ASP239 GLU240 ALA241 VAL242 LYS243 ILE244 GLY245 LYS246 GLN247 LEU248 LYS249 GLY250 VAL251 LEU252 ALA253 TYR254 ALA255 GLU256 ASP257 PRO258 CYS259 GLY260 ALA261 GLU262 GLN263 GLY264 TYR265 SER266 GLY267 ARG268 GLU269 ILE270 MET271 ALA272 GLU273 PHE274 ARG275 ARG276 ALA277 THR278 GLY279 LEU280 PRO281 THR282 ALA283 THR284 ASN285 MET286 ILE287 ALA288 THR289 ASP290 TRP291 ARG292 GLN293 MET294 GLY295 HIS296 THR297 ILE298 SER299 LEU300 GLN301 SER302 VAL303 ASP304 ILE305 PRO306 LEU307 ALA308 ASP309 PRO310 HIS311 PHE312 TRP313 THR314 MET315 GLN316 GLY317 SER318 ILE319 ARG320 VAL321 ALA322 GLN323 MET324 CYS325 HIS326 GLU327 TRP328 GLY329 LEU330 THR331 TRP332 GLY333 SER334 HIS335 SER336 ASN337 ASN338 HIS339 PHE340 ASP341 ILE342 SER343 LEU344 ALA345 MET346 PHE347 THR348 HIS349 VAL350 ALA351 ALA352 ALA353 ALA354 PRO355 GLY356 ASP357 ILE358 THR359 ALA360 ILE361 ASP362 THR363 HIS364 TRP365 ILE366 TRP367 GLN368 GLU369 GLY370 ASN371 GLN372 ARG373 LEU374 THR375 LYS376 GLU377 PRO378 PHE379 GLN380 ILE381 LYS382 GLY383 GLY384 LEU385 VAL386 GLU387 VAL388 PRO389 LYS390 LYS391 PRO392 GLY393 LEU394 GLY395 VAL396 GLU397 LEU398 ASP399 MET400 ASP401 GLN402 VAL403 MET404 LYS405 ALA406 ASN407 GLU408 LEU409 TYR410 LYS411 SER412 MET413 GLY414 LEU415 GLY416 ALA417 ARG418 ASP419 ASP420 ALA421 MET422 ALA423 MET424 GLN425 PHE426 LEU427 ILE428 PRO429 GLY430 TRP431 LYS432 PHE433 ASP434 ASN435 LYS436 LYS437 PRO438 CYS439 LEU440 VAL441 ARG442
Unit 3 SER2 THR3 PRO4 ILE5 ILE6 THR7 GLU8 MET9 GLN10 VAL11 ILE12 PRO13 VAL14 ALA15 GLY16 HIS17 ASP18 SER19 MET20 LEU21 LEU22 ASN23 LEU24 SER25 GLY26 ALA27 HIS28 SER29 PRO30 TYR31 PHE32 THR33 ARG34 ASN35 ILE36 VAL37 ILE38 LEU39 LYS40 ASP41 ASN42 SER43 GLY44 ASN45 THR46 GLY47 VAL48 GLY49 GLU50 VAL51 PRO52 GLY53 GLY54 GLU55 LYS56 ILE57 ARG58 GLN59 THR60 LEU61 GLU62 ASP63 ALA64 LYS65 PRO66 LEU67 VAL68 ILE69 GLY70 LYS71 THR72 LEU73 GLY74 GLU75 TYR76 LYS77 ASN78 VAL79 MET80 ASN81 THR82 VAL83 ARG84 GLN85 THR86 PHE87 ASN88 ASP89 HIS90 ASP91 ALA92 GLY93 GLY94 ARG95 GLY96 LEU97 GLN98 THR99 PHE100 ASP101 LEU102 ARG103 THR104 THR105 ILE106 HIS107 VAL108 VAL109 THR110 ALA111 ILE112 GLU113 ALA114 ALA115 MET116 LEU117 ASP118 LEU119 LEU120 GLY121 GLN122 PHE123 LEU124 GLY125 VAL126 THR127 VAL128 ALA129 SER130 LEU131 LEU132 GLY133 ASP134 GLY135 GLN136 GLN137 ARG138 ASP139 ALA140 VAL141 GLU142 MET143 LEU144 GLY145 TYR146 LEU147 PHE148 PHE149 ILE150 GLY151 ASP152 ARG153 LYS154 LYS155 THR156 THR157 LEU158 ALA159 TYR160 GLN161 ASN162 GLN163 GLU164 ASN165 ASP166 PRO167 CYS168 ASP169 TRP170 TYR171 ARG172 VAL173 ARG174 HIS175 GLU176 GLU177 ALA178 MET179 THR180 PRO181 GLU182 SER183 VAL184 VAL185 ARG186 LEU187 ALA188 GLU189 ALA190 ALA191 TYR192 GLU193 LYS194 TYR195 GLY196 PHE197 ASN198 ASP199 PHE200 LYS201 LEU202 LYS203 GLY204 GLY205 VAL206 LEU207 ASP208 GLY209 PHE210 GLU211 GLU212 ALA213 GLU214 ALA215 VAL216 THR217 ALA218 LEU219 ALA220 LYS221 ARG222 PHE223 PRO224 ASP225 ALA226 ARG227 ILE228 THR229 LEU230 ASP231 PRO232 ASN233 GLY234 ALA235 TRP236 SER237 LEU238 ASP239 GLU240 ALA241 VAL242 LYS243 ILE244 GLY245 LYS246 GLN247 LEU248 LYS249 GLY250 VAL251 LEU252 ALA253 TYR254 ALA255 GLU256 ASP257 PRO258 CYS259 GLY260 ALA261 GLU262 GLN263 GLY264 TYR265 SER266 GLY267 ARG268 GLU269 ILE270 MET271 ALA272 GLU273 PHE274 ARG275 ARG276 ALA277 THR278 GLY279 LEU280 PRO281 THR282 ALA283 THR284 ASN285 MET286 ILE287 ALA288 THR289 ASP290 TRP291 ARG292 GLN293 MET294 GLY295 HIS296 THR297 ILE298 SER299 LEU300 GLN301 SER302 VAL303 ASP304 ILE305 PRO306 LEU307 ALA308 ASP309 PRO310 HIS311 PHE312 TRP313 THR314 MET315 GLN316 GLY317 SER318 ILE319 ARG320 VAL321 ALA322 GLN323 MET324 CYS325 HIS326 GLU327 TRP328 GLY329 LEU330 THR331 TRP332 GLY333 SER334 HIS335 SER336 ASN337 ASN338 HIS339 PHE340 ASP341 ILE342 SER343 LEU344 ALA345 MET346 PHE347 THR348 HIS349 VAL350 ALA351 ALA352 ALA353 ALA354 PRO355 GLY356 ASP357 ILE358 THR359 ALA360 ILE361 ASP362 THR363 HIS364 TRP365 ILE366 TRP367 GLN368 GLU369 GLY370 ASN371 GLN372 ARG373 LEU374 THR375 LYS376 GLU377 PRO378 PHE379 GLN380 ILE381 LYS382 GLY383 GLY384 LEU385 VAL386 GLU387 VAL388 PRO389 LYS390 LYS391 PRO392 GLY393 LEU394 GLY395 VAL396 GLU397 LEU398 ASP399 MET400 ASP401 GLN402 VAL403 MET404 LYS405 ALA406 ASN407 GLU408 LEU409 TYR410 LYS411 SER412 MET413 GLY414 LEU415 GLY416 ALA417 ARG418 ASP419 ASP420 ALA421 MET422 ALA423 MET424 GLN425 PHE426 LEU427 ILE428 PRO429 GLY430 TRP431 LYS432 PHE433 ASP434 ASN435 LYS436 LYS437 PRO438 CYS439 LEU440 VAL441 ARG442
Unit 4 SER2 THR3 PRO4 ILE5 ILE6 THR7 GLU8 MET9 GLN10 VAL11 ILE12 PRO13 VAL14 ALA15 GLY16 HIS17 ASP18 SER19 MET20 LEU21 LEU22 ASN23 LEU24 SER25 GLY26 ALA27 HIS28 SER29 PRO30 TYR31 PHE32 THR33 ARG34 ASN35 ILE36 VAL37 ILE38 LEU39 LYS40 ASP41 ASN42 SER43 GLY44 ASN45 THR46 GLY47 VAL48 GLY49 GLU50 VAL51 PRO52 GLY53 GLY54 GLU55 LYS56 ILE57 ARG58 GLN59 THR60 LEU61 GLU62 ASP63 ALA64 LYS65 PRO66 LEU67 VAL68 ILE69 GLY70 LYS71 THR72 LEU73 GLY74 GLU75 TYR76 LYS77 ASN78 VAL79 MET80 ASN81 THR82 VAL83 ARG84 GLN85 THR86 PHE87 ASN88 ASP89 HIS90 ASP91 ALA92 GLY93 GLY94 ARG95 GLY96 LEU97 GLN98 THR99 PHE100 ASP101 LEU102 ARG103 THR104 THR105 ILE106 HIS107 VAL108 VAL109 THR110 ALA111 ILE112 GLU113 ALA114 ALA115 MET116 LEU117 ASP118 LEU119 LEU120 GLY121 GLN122 PHE123 LEU124 GLY125 VAL126 THR127 VAL128 ALA129 SER130 LEU131 LEU132 GLY133 ASP134 GLY135 GLN136 GLN137 ARG138 ASP139 ALA140 VAL141 GLU142 MET143 LEU144 GLY145 TYR146 LEU147 PHE148 PHE149 ILE150 GLY151 ASP152 ARG153 LYS154 LYS155 THR156 THR157 LEU158 ALA159 TYR160 GLN161 ASN162 GLN163 GLU164 ASN165 ASP166 PRO167 CYS168 ASP169 TRP170 TYR171 ARG172 VAL173 ARG174 HIS175 GLU176 GLU177 ALA178 MET179 THR180 PRO181 GLU182 SER183 VAL184 VAL185 ARG186 LEU187 ALA188 GLU189 ALA190 ALA191 TYR192 GLU193 LYS194 TYR195 GLY196 PHE197 ASN198 ASP199 PHE200 LYS201 LEU202 LYS203 GLY204 GLY205 VAL206 LEU207 ASP208 GLY209 PHE210 GLU211 GLU212 ALA213 GLU214 ALA215 VAL216 THR217 ALA218 LEU219 ALA220 LYS221 ARG222 PHE223 PRO224 ASP225 ALA226 ARG227 ILE228 THR229 LEU230 ASP231 PRO232 ASN233 GLY234 ALA235 TRP236 SER237 LEU238 ASP239 GLU240 ALA241 VAL242 LYS243 ILE244 GLY245 LYS246 GLN247 LEU248 LYS249 GLY250 VAL251 LEU252 ALA253 TYR254 ALA255 GLU256 ASP257 PRO258 CYS259 GLY260 ALA261 GLU262 GLN263 GLY264 TYR265 SER266 GLY267 ARG268 GLU269 ILE270 MET271 ALA272 GLU273 PHE274 ARG275 ARG276 ALA277 THR278 GLY279 LEU280 PRO281 THR282 ALA283 THR284 ASN285 MET286 ILE287 ALA288 THR289 ASP290 TRP291 ARG292 GLN293 MET294 GLY295 HIS296 THR297 ILE298 SER299 LEU300 GLN301 SER302 VAL303 ASP304 ILE305 PRO306 LEU307 ALA308 ASP309 PRO310 HIS311 PHE312 TRP313 THR314 MET315 GLN316 GLY317 SER318 ILE319 ARG320 VAL321 ALA322 GLN323 MET324 CYS325 HIS326 GLU327 TRP328 GLY329 LEU330 THR331 TRP332 GLY333 SER334 HIS335 SER336 ASN337 ASN338 HIS339 PHE340 ASP341 ILE342 SER343 LEU344 ALA345 MET346 PHE347 THR348 HIS349 VAL350 ALA351 ALA352 ALA353 ALA354 PRO355 GLY356 ASP357 ILE358 THR359 ALA360 ILE361 ASP362 THR363 HIS364 TRP365 ILE366 TRP367 GLN368 GLU369 GLY370 ASN371 GLN372 ARG373 LEU374 THR375 LYS376 GLU377 PRO378 PHE379 GLN380 ILE381 LYS382 GLY383 GLY384 LEU385 VAL386 GLU387 VAL388 PRO389 LYS390 LYS391 PRO392 GLY393 LEU394 GLY395 VAL396 GLU397 LEU398 ASP399 MET400 ASP401 GLN402 VAL403 MET404 LYS405 ALA406 ASN407 GLU408 LEU409 TYR410 LYS411 SER412 MET413 GLY414 LEU415 GLY416 ALA417 ARG418 ASP419 ASP420 ALA421 MET422 ALA423 MET424 GLN425 PHE426 LEU427 ILE428 PRO429 GLY430 TRP431 LYS432 PHE433 ASP434 ASN435 LYS436 LYS437 PRO438 CYS439 LEU440 VAL441 ARG442
Ligands
Unit 5 SO4501 NA502 GOL503 GOL504 DTU505
Unit 6 SO4501 NA502 GOL503 GOL504 GOL505 GOL506 DTT507
Unit 7 SO4501 NA502 GOL503 DTT504
Unit 8 SO4501 NA502 DTT503
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany