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Sequence, Chains, Asymmetric and Biological Units

Title HUMAN TOPOISOMERASE IIBETA IN COMPLEX WITH DNA AND MITOXANTR
Keywords TOPRIM DOMAIN, WINGED-HELIX DOMAIN, COILED-COIL DOMAIN, DNA- AND CLEAVAGE, NUCLEUS, ISOMERASE-DNA-ISOMERASE INHIBITOR CO
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4G0V     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA TOPOISOMERASE 2-BETA  A 663 5347 0
2  Protein   DNA TOPOISOMERASE 2-BETA  B 666 5375 0
3  Other macromolecule   DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3')  C 8 165 0
4  Other macromolecule    D 12 245 0
5  Other macromolecule   DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3')  E 8 165 0
6  Other macromolecule    F 12 245 0
7  Ligand   DNA TOPOISOMERASE 2-BETA  A 3 0 34
8  Ligand   DNA TOPOISOMERASE 2-BETA  B 2 0 2
9  Ligand    D 2 0 33
10  Ligand    F 1 0 1
11 Water     559 0 559
total       1936 11542 629
Proteins
Unit 1 LYS452 GLY453 ILE454 PRO455 LYS456 LEU457 ASP458 ASP459 ALA460 ASN461 ASP462 ALA463 GLY464 GLY465 LYS466 HIS467 SER468 LEU469 GLU470 CYS471 THR472 LEU473 ILE474 LEU475 THR476 GLU477 GLY478 ASP479 SER480 ALA481 LYS482 SER483 LEU484 ALA485 VAL486 SER487 GLY488 LEU489 GLY490 VAL491 ILE492 GLY493 ARG494 ASP495 ARG496 TYR497 GLY498 VAL499 PHE500 PRO501 LEU502 ARG503 GLY504 LYS505 ILE506 LEU507 ASN508 VAL509 ARG510 GLU511 ALA512 SER513 HIS514 LYS515 GLN516 ILE517 MET518 GLU519 ASN520 ALA521 GLU522 ILE523 ASN524 ASN525 ILE526 ILE527 LYS528 ILE529 VAL530 GLY531 LEU532 GLN533 TYR534 LYS535 LYS536 SER537 TYR538 ASP539 ASP540 ALA541 GLU542 SER543 LEU544 LYS545 THR546 LEU547 ARG548 TYR549 GLY550 LYS551 ILE552 MET553 ILE554 MET555 THR556 ASP557 GLN558 ASP559 GLN560 ASP561 GLY562 SER563 HIS564 ILE565 LYS566 GLY567 LEU568 LEU569 ILE570 ASN571 PHE572 ILE573 HIS574 HIS575 ASN576 TRP577 PRO578 SER579 LEU580 LEU581 LYS582 HIS583 GLY584 PHE585 LEU586 GLU587 GLU588 PHE589 ILE590 THR591 ASP646 MET647 GLU648 ARG649 HIS650 ARG651 ILE652 LEU653 PHE654 ARG655 TYR656 ALA657 GLY658 PRO659 GLU660 ASP661 ASP662 ALA663 ALA664 ILE665 THR666 LEU667 ALA668 PHE669 SER670 LYS671 LYS672 LYS673 ILE674 ASP675 ASP676 ARG677 LYS678 GLU679 TRP680 LEU681 THR682 ASN683 PHE684 MET685 GLU686 ASP687 ARG688 ARG689 GLN690 ARG691 ARG692 LEU693 HIS694 GLY695 LEU696 LYS707 HIS708 LEU709 THR710 TYR711 ASN712 ASP713 PHE714 ILE715 ASN716 LYS717 GLU718 LEU719 ILE720 LEU721 PHE722 SER723 ASN724 SER725 ASP726 ASN727 GLU728 ARG729 SER730 ILE731 PRO732 SER733 LEU734 VAL735 ASP736 GLY737 PHE738 LYS739 PRO740 GLY741 GLN742 ARG743 LYS744 VAL745 LEU746 PHE747 THR748 CYS749 PHE750 LYS751 ARG752 ASN753 ASP754 LYS755 ARG756 GLU757 VAL758 LYS759 VAL760 ALA761 GLN762 LEU763 ALA764 GLY765 SER766 VAL767 ALA768 GLU769 MET770 SER771 ALA772 TYR773 HIS774 HIS775 GLY776 GLU777 GLN778 ALA779 LEU780 MET781 MET782 THR783 ILE784 VAL785 ASN786 LEU787 ALA788 GLN789 ASN790 PHE791 VAL792 GLY793 SER794 ASN795 ASN796 ILE797 ASN798 LEU799 LEU800 GLN801 PRO802 ILE803 GLY804 GLN805 PHE806 GLY807 THR808 ARG809 LEU810 HIS811 GLY812 GLY813 LYS814 ASP815 ALA816 ALA817 SER818 PRO819 ARG820 TYR821 ILE822 PHE823 THR824 MET825 LEU826 SER827 THR828 LEU829 ALA830 ARG831 LEU832 LEU833 PHE834 PRO835 ALA836 VAL837 ASP838 ASP839 ASN840 LEU841 LEU842 LYS843 PHE844 LEU845 TYR846 ASP847 ASP848 ASN849 GLN850 ARG851 VAL852 GLU853 PRO854 GLU855 TRP856 TYR857 ILE858 PRO859 ILE860 ILE861 PRO862 MET863 VAL864 LEU865 ILE866 ASN867 GLY868 ALA869 GLU870 GLY871 ILE872 GLY873 THR874 GLY875 TRP876 ALA877 CYS878 LYS879 LEU880 PRO881 ASN882 TYR883 ASP884 ALA885 ARG886 GLU887 ILE888 VAL889 ASN890 ASN891 VAL892 ARG893 ARG894 MET895 LEU896 ASP897 GLY898 LEU899 ASP900 PRO901 HIS902 PRO903 MET904 LEU905 PRO906 ASN907 TYR908 LYS909 ASN910 PHE911 LYS912 GLY913 THR914 ILE915 GLN916 GLU917 LEU918 GLY919 GLN920 ASN921 GLN922 TYR923 ALA924 VAL925 SER926 GLY927 GLU928 ILE929 PHE930 VAL931 VAL932 ASP933 ARG934 ASN935 THR936 VAL937 GLU938 ILE939 THR940 GLU941 LEU942 PRO943 VAL944 ARG945 THR946 TRP947 THR948 GLN949 VAL950 TYR951 LYS952 GLU953 GLN954 VAL955 LEU956 GLU957 PRO958 MET959 LEU960 ASN961 GLY962 THR963 ASP964 LYS965 THR966 PRO967 ALA968 LEU969 ILE970 SER971 ASP972 TYR973 LYS974 GLU975 TYR976 HIS977 THR978 ASP979 THR980 THR981 VAL982 LYS983 PHE984 VAL985 VAL986 LYS987 MET988 THR989 GLU990 GLU991 LYS992 LEU993 ALA994 GLN995 ALA996 GLU997 ALA998 ALA999 GLY1000 LEU1001 HIS1002 LYS1003 VAL1004 PHE1005 LYS1006 LEU1007 GLN1008 THR1009 THR1010 LEU1011 THR1012 CYS1013 ASN1014 SER1015 MET1016 VAL1017 LEU1018 PHE1019 ASP1020 HIS1021 MET1022 GLY1023 CYS1024 LEU1025 LYS1026 LYS1027 TYR1028 GLU1029 THR1030 VAL1031 GLN1032 ASP1033 ILE1034 LEU1035 LYS1036 GLU1037 PHE1038 PHE1039 ASP1040 LEU1041 ARG1042 LEU1043 SER1044 TYR1045 TYR1046 GLY1047 LEU1048 ARG1049 LYS1050 GLU1051 TRP1052 LEU1053 VAL1054 GLY1055 MET1056 LEU1057 GLY1058 ALA1059 GLU1060 SER1061 THR1062 LYS1063 LEU1064 ASN1065 ASN1066 GLN1067 ALA1068 ARG1069 PHE1070 ILE1071 LEU1072 GLU1073 LYS1074 ILE1075 GLN1076 GLY1077 LYS1078 ILE1079 THR1080 ILE1081 GLU1082 ASN1083 ARG1084 SER1085 LYS1086 LYS1087 ASP1088 LEU1089 ILE1090 GLN1091 MET1092 LEU1093 VAL1094 GLN1095 ARG1096 GLY1097 TYR1098 GLU1099 SER1100 ASP1101 PRO1102 VAL1103 LYS1104 ALA1105 TRP1106 LYS1107 GLU1108 ALA1109 GLN1110 GLU1111 GLY1135 PRO1136 ASP1137 PHE1138 ASN1139 TYR1140 ILE1141 LEU1142 ASN1143 MET1144 SER1145 LEU1146 TRP1147 SER1148 LEU1149 THR1150 LYS1151 GLU1152 LYS1153 VAL1154 GLU1155 GLU1156 LEU1157 ILE1158 LYS1159 GLN1160 ARG1161 ASP1162 ALA1163 LYS1164 GLY1165 ARG1166 GLU1167 VAL1168 ASN1169 ASP1170 LEU1171 LYS1172 ARG1173 LYS1174 SER1175 PRO1176 SER1177 ASP1178 LEU1179 TRP1180 LYS1181 GLU1182 ASP1183 LEU1184 ALA1185 ALA1186 PHE1187 VAL1188 GLU1189 GLU1190 LEU1191 ASP1192 LYS1193 VAL1194 GLU1195 SER1196 GLN1197 GLU1198 ARG1199 GLU1200 ASP1201
Unit 2 SER449 LYS450 ILE451 LYS452 GLY453 ILE454 PRO455 LYS456 LEU457 ASP458 ASP459 ALA460 ASN461 ASP462 ALA463 GLY464 GLY465 LYS466 HIS467 SER468 LEU469 GLU470 CYS471 THR472 LEU473 ILE474 LEU475 THR476 GLU477 GLY478 ASP479 SER480 ALA481 LYS482 SER483 LEU484 ALA485 VAL486 SER487 GLY488 LEU489 GLY490 VAL491 ILE492 GLY493 ARG494 ASP495 ARG496 TYR497 GLY498 VAL499 PHE500 PRO501 LEU502 ARG503 GLY504 LYS505 ILE506 LEU507 ASN508 VAL509 ARG510 GLU511 ALA512 SER513 HIS514 LYS515 GLN516 ILE517 MET518 GLU519 ASN520 ALA521 GLU522 ILE523 ASN524 ASN525 ILE526 ILE527 LYS528 ILE529 VAL530 GLY531 LEU532 GLN533 TYR534 LYS535 LYS536 SER537 TYR538 ASP539 ASP540 ALA541 GLU542 SER543 LEU544 LYS545 THR546 LEU547 ARG548 TYR549 GLY550 LYS551 ILE552 MET553 ILE554 MET555 THR556 ASP557 GLN558 ASP559 GLN560 ASP561 GLY562 SER563 HIS564 ILE565 LYS566 GLY567 LEU568 LEU569 ILE570 ASN571 PHE572 ILE573 HIS574 HIS575 ASN576 TRP577 PRO578 SER579 LEU580 LEU581 LYS582 HIS583 GLY584 PHE585 LEU586 GLU587 GLU588 PHE589 ILE590 ALA637 LYS638 GLU639 ALA640 LYS641 GLU642 TYR643 PHE644 ALA645 ASP646 MET647 GLU648 ARG649 HIS650 ARG651 ILE652 LEU653 PHE654 ARG655 TYR656 ALA657 GLY658 PRO659 GLU660 ASP661 ASP662 ALA663 ALA664 ILE665 THR666 LEU667 ALA668 PHE669 SER670 LYS671 LYS672 LYS673 ILE674 ASP675 ASP676 ARG677 LYS678 GLU679 TRP680 LEU681 THR682 ASN683 PHE684 MET685 GLU686 ASP687 ARG688 ARG689 GLN690 ARG691 ARG692 LEU693 LYS707 HIS708 LEU709 THR710 TYR711 ASN712 ASP713 PHE714 ILE715 ASN716 LYS717 GLU718 LEU719 ILE720 LEU721 PHE722 SER723 ASN724 SER725 ASP726 ASN727 GLU728 ARG729 SER730 ILE731 PRO732 SER733 LEU734 VAL735 ASP736 GLY737 PHE738 LYS739 PRO740 GLY741 GLN742 ARG743 LYS744 VAL745 LEU746 PHE747 THR748 CYS749 PHE750 LYS751 ARG752 ASN753 ASP754 LYS755 ARG756 GLU757 VAL758 LYS759 VAL760 ALA761 GLN762 LEU763 ALA764 GLY765 SER766 VAL767 ALA768 GLU769 MET770 SER771 ALA772 TYR773 HIS774 HIS775 GLY776 GLU777 GLN778 ALA779 LEU780 MET781 MET782 THR783 ILE784 VAL785 ASN786 LEU787 ALA788 GLN789 ASN790 PHE791 VAL792 GLY793 SER794 ASN795 ASN796 ILE797 ASN798 LEU799 LEU800 GLN801 PRO802 ILE803 GLY804 GLN805 PHE806 GLY807 THR808 ARG809 LEU810 HIS811 GLY812 GLY813 LYS814 ASP815 ALA816 ALA817 SER818 PRO819 ARG820 TYR821 ILE822 PHE823 THR824 MET825 LEU826 SER827 THR828 LEU829 ALA830 ARG831 LEU832 LEU833 PHE834 PRO835 ALA836 VAL837 ASP838 ASP839 ASN840 LEU841 LEU842 LYS843 PHE844 LEU845 TYR846 ASP847 ASP848 ASN849 GLN850 ARG851 VAL852 GLU853 PRO854 GLU855 TRP856 TYR857 ILE858 PRO859 ILE860 ILE861 PRO862 MET863 VAL864 LEU865 ILE866 ASN867 GLY868 ALA869 GLU870 GLY871 ILE872 GLY873 THR874 GLY875 TRP876 ALA877 CYS878 LYS879 LEU880 PRO881 ASN882 TYR883 ASP884 ALA885 ARG886 GLU887 ILE888 VAL889 ASN890 ASN891 VAL892 ARG893 ARG894 MET895 LEU896 ASP897 GLY898 LEU899 ASP900 PRO901 HIS902 PRO903 MET904 LEU905 PRO906 ASN907 TYR908 LYS909 ASN910 PHE911 LYS912 GLY913 THR914 ILE915 GLN916 GLU917 LEU918 GLY919 GLN920 ASN921 GLN922 TYR923 ALA924 VAL925 SER926 GLY927 GLU928 ILE929 PHE930 VAL931 VAL932 ASP933 ARG934 ASN935 THR936 VAL937 GLU938 ILE939 THR940 GLU941 LEU942 PRO943 VAL944 ARG945 THR946 TRP947 THR948 GLN949 VAL950 TYR951 LYS952 GLU953 GLN954 VAL955 LEU956 GLU957 PRO958 MET959 LEU960 ASN961 GLY962 PRO967 ALA968 LEU969 ILE970 SER971 ASP972 TYR973 LYS974 GLU975 TYR976 HIS977 THR978 ASP979 THR980 THR981 VAL982 LYS983 PHE984 VAL985 VAL986 LYS987 MET988 THR989 GLU990 GLU991 LYS992 LEU993 ALA994 GLN995 ALA996 GLU997 ALA998 ALA999 GLY1000 LEU1001 HIS1002 LYS1003 VAL1004 PHE1005 LYS1006 LEU1007 GLN1008 THR1009 THR1010 LEU1011 THR1012 CYS1013 ASN1014 SER1015 MET1016 VAL1017 LEU1018 PHE1019 ASP1020 HIS1021 MET1022 GLY1023 CYS1024 LEU1025 LYS1026 LYS1027 TYR1028 GLU1029 THR1030 VAL1031 GLN1032 ASP1033 ILE1034 LEU1035 LYS1036 GLU1037 PHE1038 PHE1039 ASP1040 LEU1041 ARG1042 LEU1043 SER1044 TYR1045 TYR1046 GLY1047 LEU1048 ARG1049 LYS1050 GLU1051 TRP1052 LEU1053 VAL1054 GLY1055 MET1056 LEU1057 GLY1058 ALA1059 GLU1060 SER1061 THR1062 LYS1063 LEU1064 ASN1065 ASN1066 GLN1067 ALA1068 ARG1069 PHE1070 ILE1071 LEU1072 GLU1073 LYS1074 ILE1075 GLN1076 GLY1077 LYS1078 ILE1079 THR1080 ILE1081 GLU1082 ASN1083 ARG1084 SER1085 LYS1086 LYS1087 ASP1088 LEU1089 ILE1090 GLN1091 MET1092 LEU1093 VAL1094 GLN1095 ARG1096 GLY1097 TYR1098 GLU1099 SER1100 ASP1101 PRO1102 VAL1103 LYS1104 ALA1105 TRP1106 LYS1107 GLU1108 ALA1109 GLN1110 GLY1135 PRO1136 ASP1137 PHE1138 ASN1139 TYR1140 ILE1141 LEU1142 ASN1143 MET1144 SER1145 LEU1146 TRP1147 SER1148 LEU1149 THR1150 LYS1151 GLU1152 LYS1153 VAL1154 GLU1155 GLU1156 LEU1157 ILE1158 LYS1159 GLN1160 ARG1161 ASP1162 ALA1163 LYS1164 GLY1165 ARG1166 GLU1167 VAL1168 ASN1169 ASP1170 LEU1171 LYS1172 ARG1173 LYS1174 SER1175 PRO1176 SER1177 ASP1178 LEU1179 TRP1180 LYS1181 GLU1182 ASP1183 LEU1184 ALA1185 ALA1186 PHE1187 VAL1188 GLU1189 GLU1190 LEU1191 ASP1192 LYS1193 VAL1194 GLU1195 SER1196 GLN1197 GLU1198 ARG1199 GLU1200 ASP1201
Other macromolecules
Unit 3 DA1 DG2 DC3 DC4 DG5 DA6 DG7 DC8
Unit 4 DT9 DG10 DC11 DA12 DG13 DC14 DT15 DC16 DG17 DG18 DC19 DT20
Unit 5 DA1 DG2 DC3 DC4 DG5 DA6 DG7 DC8
Unit 6 DT9 DG10 DC11 DA12 DG13 DC14 DT15 DC16 DG17 DG18 DC19 DT20
Ligands
Unit 7 MIX1301 MG1302 MG1303
Unit 8 MG1301 MG1302
Unit 9 MIX101 MG102
Unit 10 MG101
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany