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Sequence, Chains, Asymmetric and Biological Units

Title COMPLEX STRUCTURE OF LSD2/AOF1/KDM1B WITH H3K4 MIMIC
Keywords LSD2, FAD, HISTONE DEMETHYLASE, C4H2C2, CW, HISTONE, EPIGENE OXIDOREDUCTASE-PROTEIN BINDING COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4FWF     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LYSINE-SPECIFIC HISTONE DEMETHYLASE 1B  A 739 5654 0
2  Protein   HISTONE H3.1  E 13 83 0
3  Ligand   LYSINE-SPECIFIC HISTONE DEMETHYLASE 1B  A 4 0 56
4 Water     33 0 33
total       789 5737 89

Proteins
Unit 1 TYR50 ARG51 LYS52 CYS53 GLU54 LYS55 ALA56 GLY57 CYS58 THR59 ALA60 THR61 CYS62 PRO63 VAL64 CYS65 PHE66 ALA67 SER68 ALA69 SER70 GLU71 ARG72 CYS73 ALA74 ASN76 GLY77 TYR78 THR79 SER80 ARG81 TRP82 TYR83 HIS84 LEU85 SER86 CYS87 GLY88 GLU89 HIS90 PHE91 CYS92 ASN93 GLU94 CYS95 PHE96 ASP97 HIS98 TYR99 TYR100 ARG101 SER102 HIS103 LYS104 ASP105 GLY106 TYR107 ASP108 LYS109 TYR110 THR111 THR112 TRP113 LYS114 LYS115 ILE116 TRP117 THR118 SER119 ASN120 GLY121 LYS122 THR123 GLU124 PRO125 SER126 PRO127 LYS128 ALA129 PHE130 MET131 ALA132 ASP133 GLN134 GLN135 LEU136 PRO137 TYR138 TRP139 VAL140 GLN141 CYS142 THR143 LYS144 PRO145 GLU146 CYS147 ARG148 LYS149 TRP150 ARG151 GLN152 LEU153 THR154 LYS155 GLU156 ILE157 GLN158 LEU159 THR160 PRO161 GLN162 ILE163 ALA164 LYS165 THR166 TYR167 ARG168 CYS169 GLY170 MET171 LYS172 PRO173 HIS184 CYS185 SER186 LEU187 PRO188 GLU189 ASP190 LEU191 ARG192 VAL193 LEU194 GLU195 VAL196 SER197 ASN198 HIS199 TRP200 TRP201 TYR202 SER203 MET204 LEU205 ILE206 LEU207 PRO208 PRO209 LEU210 LEU211 LYS212 ASP213 SER214 VAL215 ALA216 ALA217 PRO218 LEU219 LEU220 SER221 ALA222 TYR223 TYR224 PRO225 ASP226 CYS227 VAL228 GLY229 MET230 SER231 PRO232 SER233 CYS234 THR235 SER236 THR237 HIS261 VAL262 PRO263 GLY264 MET265 ASN266 ARG267 TYR268 PHE269 GLN270 PRO271 PHE272 TYR273 GLN274 PRO275 ASN276 GLU277 CYS278 GLY279 LYS280 ALA281 LEU282 CYS283 VAL284 ARG285 PRO286 ASP287 VAL288 MET289 GLU290 LEU291 ASP292 GLU293 LEU294 TYR295 GLU296 PHE297 PRO298 GLU299 TYR300 SER301 ARG302 ASP303 PRO304 THR305 MET306 TYR307 LEU308 ALA309 LEU310 ARG311 ASN312 LEU313 ILE314 LEU315 ALA316 LEU317 TRP318 TYR319 THR320 ASN321 CYS322 LYS323 GLU324 ALA325 LEU326 THR327 PRO328 GLN329 LYS330 CYS331 ILE332 PRO333 HIS334 ILE335 ILE336 VAL337 ARG338 GLY339 LEU340 VAL341 ARG342 ILE343 ARG344 CYS345 VAL346 GLN347 GLU348 VAL349 GLU350 ARG351 ILE352 LEU353 TYR354 PHE355 MET356 THR357 ARG358 LYS359 GLY360 LEU361 ILE362 ASN363 THR364 GLY365 VAL366 LEU367 SER368 VAL369 GLY370 ALA371 ASP372 GLN373 TYR374 LEU375 LEU376 PRO377 LYS378 ASP379 TYR380 HIS381 ASN382 LYS383 SER384 VAL385 ILE386 ILE387 ILE388 GLY389 ALA390 GLY391 PRO392 ALA393 GLY394 LEU395 ALA396 ALA397 ALA398 ARG399 GLN400 LEU401 HIS402 ASN403 PHE404 GLY405 ILE406 LYS407 VAL408 THR409 VAL410 LEU411 GLU412 ALA413 LYS414 ASP415 ARG416 ILE417 GLY418 GLY419 ARG420 VAL421 TRP422 ASP423 ASP424 LYS425 SER426 PHE427 LYS428 GLY429 VAL430 THR431 VAL432 GLY433 ARG434 GLY435 ALA436 GLN437 ILE438 VAL439 ASN440 GLY441 CYS442 ILE443 ASN444 ASN445 PRO446 VAL447 ALA448 LEU449 MET450 CYS451 GLU452 GLN453 LEU454 GLY455 ILE456 SER457 MET458 HIS459 LYS460 PHE461 GLY462 GLU463 ARG464 CYS465 ASP466 LEU467 ILE468 GLN469 GLU470 GLY471 GLY472 ARG473 ILE474 THR475 ASP476 PRO477 THR478 ILE479 ASP480 LYS481 ARG482 MET483 ASP484 PHE485 HIS486 PHE487 ASN488 ALA489 LEU490 LEU491 ASP492 VAL493 VAL494 SER495 GLU496 TRP497 ARG498 LYS499 ASP500 LYS501 THR502 GLN503 LEU504 GLN505 ASP506 VAL507 PRO508 LEU509 GLY510 GLU511 LYS512 ILE513 GLU514 GLU515 ILE516 TYR517 LYS518 ALA519 PHE520 ILE521 LYS522 GLU523 SER524 GLY525 ILE526 GLN527 PHE528 SER529 GLU530 LEU531 GLU532 GLY533 GLN534 VAL535 LEU536 GLN537 PHE538 HIS539 LEU540 SER541 ASN542 LEU543 GLU544 TYR545 ALA546 CYS547 GLY548 SER549 ASN550 LEU551 HIS552 GLN553 VAL554 SER555 ALA556 ARG557 SER558 TRP559 ASP560 HIS561 ASN562 GLU563 PHE564 PHE565 ALA566 GLN567 PHE568 ALA569 GLY570 ASP571 HIS572 THR573 LEU574 LEU575 THR576 PRO577 GLY578 TYR579 SER580 VAL581 ILE582 ILE583 GLU584 LYS585 LEU586 ALA587 GLU588 GLY589 LEU590 ASP591 ILE592 GLN593 LEU594 LYS595 SER596 PRO597 VAL598 GLN599 CYS600 ILE601 ASP602 TYR603 SER604 GLY605 ASP606 GLU607 VAL608 GLN609 VAL610 THR611 THR612 THR613 ASP614 GLY615 THR616 GLY617 TYR618 SER619 ALA620 GLN621 LYS622 VAL623 LEU624 VAL625 THR626 VAL627 PRO628 LEU629 ALA630 LEU631 LEU632 GLN633 LYS634 GLY635 ALA636 ILE637 GLN638 PHE639 ASN640 PRO641 PRO642 LEU643 SER644 GLU645 LYS646 LYS647 MET648 LYS649 ALA650 ILE651 ASN652 SER653 LEU654 GLY655 ALA656 GLY657 ILE658 ILE659 GLU660 LYS661 ILE662 ALA663 LEU664 GLN665 PHE666 PRO667 TYR668 ARG669 PHE670 TRP671 ASP672 SER673 LYS674 VAL675 GLN676 GLY677 ALA678 ASP679 PHE680 PHE681 GLY682 HIS683 VAL684 PRO685 PRO686 SER687 ALA688 SER689 LYS690 ARG691 GLY692 LEU693 PHE694 ALA695 VAL696 PHE697 TYR698 ASP699 MET700 ASP701 PRO702 GLN703 LYS704 LYS705 HIS706 SER707 VAL708 LEU709 MET710 SER711 VAL712 ILE713 ALA714 GLY715 GLU716 ALA717 VAL718 ALA719 SER720 VAL721 ARG722 THR723 LEU724 ASP725 ASP726 LYS727 GLN728 VAL729 LEU730 GLN731 GLN732 CYS733 MET734 ALA735 THR736 LEU737 ARG738 GLU739 LEU740 PHE741 LYS742 GLU743 GLN744 GLU745 VAL746 PRO747 ASP748 PRO749 THR750 LYS751 TYR752 PHE753 VAL754 THR755 ARG756 TRP757 SER758 THR759 ASP760 PRO761 TRP762 ILE763 GLN764 MET765 ALA766 TYR767 SER768 PHE769 VAL770 LYS771 THR772 GLY773 GLY774 SER775 GLY776 GLU777 ALA778 TYR779 ASP780 ILE781 ILE782 ALA783 GLU784 ASP785 ILE786 GLN787 GLY788 THR789 VAL790 PHE791 PHE792 ALA793 GLY794 GLU795 ALA796 THR797 ASN798 ARG799 HIS800 PHE801 PRO802 GLN803 THR804 VAL805 THR806 GLY807 ALA808 TYR809 LEU810 SER811 GLY812 VAL813 ARG814 GLU815 ALA816 SER817 LYS818 ILE819 ALA820 ALA821 PHE822
Unit 2 ALA1 ARG2 THR3 MET4 GLN5 THR6 ALA7 ARG8 LYS9 SER10 THR11 GLY12 GLY13

Ligands
Unit 3 ZN901 ZN902 ZN903 FAD904

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany