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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE D75N MUTANT CAPSID OF FLOCK HOUSE V
Keywords VIRUS, FLOCK HOUSE VIRUS, NODAVIRUS, RNA, BETA-BARREL, JELLY ASPARTYL PROTEASE, CAPSID PROTEIN, HYDROLASE, AUTOPROTEOLYS VIRION, ICOSAHEDRAL VIRUS
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4FTE     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CAPSID PROTEIN ALPHA  A 328 2456 0
2  Protein   CAPSID PROTEIN ALPHA  B 330 2466 0
3  Protein   CAPSID PROTEIN ALPHA  C 329 2461 0
4  RNA    R 15 302 0
5  Ligand   CAPSID PROTEIN ALPHA  A 4 0 22
6  Ligand   CAPSID PROTEIN ALPHA  B 3 0 17
7  Ligand   CAPSID PROTEIN ALPHA  C 2 0 16
8 Water     256 0 256
total       1267 7685 311
Proteins
Unit 1 THR57 ARG58 LEU59 SER60 GLN61 PRO62 GLY63 LEU64 ALA65 PHE66 LEU67 LYS68 CYS69 ALA70 PHE71 ALA72 PRO73 PRO74 ASN75 PHE76 ASN77 THR78 ASP79 PRO80 GLY81 LYS82 GLY83 ILE84 PRO85 ASP86 ARG87 PHE88 GLU89 GLY90 LYS91 VAL92 VAL93 SER94 ARG95 LYS96 ASP97 VAL98 LEU99 ASN100 GLN101 SER102 ILE103 SER104 PHE105 THR106 ALA107 GLY108 GLN109 ASP110 THR111 PHE112 ILE113 LEU114 ILE115 ALA116 PRO117 THR118 PRO119 GLY120 VAL121 ALA122 TYR123 TRP124 SER125 ALA126 SER127 VAL128 PRO129 ALA130 GLY131 THR132 PHE133 PRO134 THR135 SER136 ALA137 THR138 THR139 PHE140 ASN141 PRO142 VAL143 ASN144 TYR145 PRO146 GLY147 PHE148 THR149 SER150 MET151 PHE152 GLY153 THR154 THR155 SER156 THR157 SER158 ARG159 SER160 ASP161 GLN162 VAL163 SER164 SER165 PHE166 ARG167 TYR168 ALA169 SER170 MET171 ASN172 VAL173 GLY174 ILE175 TYR176 PRO177 THR178 SER179 ASN180 LEU181 MET182 GLN183 PHE184 ALA185 GLY186 SER187 ILE188 THR189 VAL190 TRP191 LYS192 CYS193 PRO194 VAL195 LYS196 LEU197 SER198 THR199 VAL200 GLN201 PHE202 PRO203 VAL204 ALA205 THR206 ASP207 PRO208 ALA209 THR210 SER211 SER212 LEU213 VAL214 HIS215 THR216 LEU217 VAL218 GLY219 LEU220 ASP221 GLY222 VAL223 LEU224 ALA225 VAL226 GLY227 PRO228 ASP229 ASN230 PHE231 SER232 GLU233 SER234 PHE235 ILE236 LYS237 GLY238 VAL239 PHE240 SER241 GLN242 SER243 ALA244 CYS245 ASN246 GLU247 PRO248 ASP249 PHE250 GLU251 PHE252 ASN253 ASP254 ILE255 LEU256 GLU257 GLY258 ILE259 GLN260 THR261 LEU262 PRO263 PRO264 ALA265 ASN266 VAL267 SER268 LEU269 GLY270 SER271 THR272 GLY273 GLN274 PRO275 PHE276 THR277 MET278 ASP279 SER280 GLY281 ALA282 GLU283 ALA284 THR285 SER286 GLY287 VAL288 VAL289 GLY290 TRP291 GLY292 ASN293 MET294 ASP295 THR296 ILE297 VAL298 ILE299 ARG300 VAL301 SER302 ALA303 PRO304 GLU305 GLY306 ALA307 VAL308 ASN309 SER310 ALA311 ILE312 LEU313 LYS314 ALA315 TRP316 SER317 CYS318 ILE319 GLU320 TYR321 ARG322 PRO323 ASN324 PRO325 ASN326 ALA327 MET328 LEU329 TYR330 GLN331 PHE332 GLY333 HIS334 ASP335 SER336 PRO337 PRO338 LEU339 ASP340 GLU341 VAL342 ALA343 LEU344 GLN345 GLU346 TYR347 ARG348 THR349 VAL350 ALA351 ARG352 SER353 LEU354 PRO355 VAL356 ALA357 VAL358 ILE359 ALA360 ALA361 GLN362 ASN363 ALA364 SER365 MET366 TRP367 GLU368 ARG369 VAL370 LYS371 SER372 ILE373 ILE374 LYS375 SER376 SER377 LEU378 ALA379 ALA380 ALA381 SER382 ASN383 ILE384
Unit 2 MET53 ALA54 ALA55 LEU56 THR57 ARG58 LEU59 SER60 GLN61 PRO62 GLY63 LEU64 ALA65 PHE66 LEU67 LYS68 CYS69 ALA70 PHE71 ALA72 PRO73 PRO74 ASN75 PHE76 ASN77 THR78 ASP79 PRO80 GLY81 LYS82 GLY83 ILE84 PRO85 ASP86 ARG87 PHE88 GLU89 GLY90 LYS91 VAL92 VAL93 SER94 ARG95 LYS96 ASP97 VAL98 LEU99 ASN100 GLN101 SER102 ILE103 SER104 PHE105 THR106 ALA107 GLY108 GLN109 ASP110 THR111 PHE112 ILE113 LEU114 ILE115 ALA116 PRO117 THR118 PRO119 GLY120 VAL121 ALA122 TYR123 TRP124 SER125 ALA126 SER127 VAL128 PRO129 ALA130 GLY131 THR132 PHE133 PRO134 THR135 SER136 ALA137 THR138 THR139 PHE140 ASN141 PRO142 VAL143 ASN144 TYR145 PRO146 GLY147 PHE148 THR149 SER150 MET151 PHE152 GLY153 THR154 THR155 SER156 THR157 SER158 ARG159 SER160 ASP161 GLN162 VAL163 SER164 SER165 PHE166 ARG167 TYR168 ALA169 SER170 MET171 ASN172 VAL173 GLY174 ILE175 TYR176 PRO177 THR178 SER179 ASN180 LEU181 MET182 GLN183 PHE184 ALA185 GLY186 SER187 ILE188 THR189 VAL190 TRP191 LYS192 CYS193 PRO194 VAL195 LYS196 LEU197 SER198 THR199 VAL200 GLN201 PHE202 PRO203 VAL204 ALA205 THR206 ASP207 PRO208 ALA209 THR210 SER211 SER212 LEU213 VAL214 HIS215 THR216 LEU217 VAL218 GLY219 LEU220 ASP221 GLY222 VAL223 LEU224 ALA225 VAL226 GLY227 PRO228 ASP229 ASN230 PHE231 SER232 GLU233 SER234 PHE235 ILE236 LYS237 GLY238 VAL239 PHE240 SER241 GLN242 SER243 ALA244 CYS245 ASN246 GLU247 PRO248 ASP249 PHE250 GLU251 PHE252 ASN253 ASP254 ILE255 LEU256 GLU257 GLY258 ILE259 GLN260 THR261 LEU262 PRO263 PRO264 ALA265 ASN266 VAL267 SER268 LEU269 GLY270 SER271 THR272 GLY273 GLN274 PRO275 PHE276 THR277 MET278 ASP279 SER280 GLY281 ALA282 GLU283 ALA284 THR285 SER286 GLY287 VAL288 VAL289 GLY290 TRP291 GLY292 ASN293 MET294 ASP295 THR296 ILE297 VAL298 ILE299 ARG300 VAL301 SER302 ALA303 PRO304 GLU305 GLY306 ALA307 VAL308 ASN309 SER310 ALA311 ILE312 LEU313 LYS314 ALA315 TRP316 SER317 CYS318 ILE319 GLU320 TYR321 ARG322 PRO323 ASN324 PRO325 ASN326 ALA327 MET328 LEU329 TYR330 GLN331 PHE332 GLY333 HIS334 ASP335 SER336 PRO337 PRO338 LEU339 ASP340 GLU341 VAL342 ALA343 LEU344 GLN345 GLU346 TYR347 ARG348 THR349 VAL350 ALA351 ARG352 SER353 LEU354 PRO355 VAL356 ALA357 VAL358 ILE359 ALA360 ALA361 GLN362 ASN363 ALA364 SER365 MET366 TRP367 GLU368 ARG369 VAL370 LYS371 SER372 ILE373 ILE374 LYS375 SER376 SER377 LEU378 ALA379 ALA380 ALA381 SER382
Unit 3 ALA55 LEU56 THR57 ARG58 LEU59 SER60 GLN61 PRO62 GLY63 LEU64 ALA65 PHE66 LEU67 LYS68 CYS69 ALA70 PHE71 ALA72 PRO73 PRO74 ASN75 PHE76 ASN77 THR78 ASP79 PRO80 GLY81 LYS82 GLY83 ILE84 PRO85 ASP86 ARG87 PHE88 GLU89 GLY90 LYS91 VAL92 VAL93 SER94 ARG95 LYS96 ASP97 VAL98 LEU99 ASN100 GLN101 SER102 ILE103 SER104 PHE105 THR106 ALA107 GLY108 GLN109 ASP110 THR111 PHE112 ILE113 LEU114 ILE115 ALA116 PRO117 THR118 PRO119 GLY120 VAL121 ALA122 TYR123 TRP124 SER125 ALA126 SER127 VAL128 PRO129 ALA130 GLY131 THR132 PHE133 PRO134 THR135 SER136 ALA137 THR138 THR139 PHE140 ASN141 PRO142 VAL143 ASN144 TYR145 PRO146 GLY147 PHE148 THR149 SER150 MET151 PHE152 GLY153 THR154 THR155 SER156 THR157 SER158 ARG159 SER160 ASP161 GLN162 VAL163 SER164 SER165 PHE166 ARG167 TYR168 ALA169 SER170 MET171 ASN172 VAL173 GLY174 ILE175 TYR176 PRO177 THR178 SER179 ASN180 LEU181 MET182 GLN183 PHE184 ALA185 GLY186 SER187 ILE188 THR189 VAL190 TRP191 LYS192 CYS193 PRO194 VAL195 LYS196 LEU197 SER198 THR199 VAL200 GLN201 PHE202 PRO203 VAL204 ALA205 THR206 ASP207 PRO208 ALA209 THR210 SER211 SER212 LEU213 VAL214 HIS215 THR216 LEU217 VAL218 GLY219 LEU220 ASP221 GLY222 VAL223 LEU224 ALA225 VAL226 GLY227 PRO228 ASP229 ASN230 PHE231 SER232 GLU233 SER234 PHE235 ILE236 LYS237 GLY238 VAL239 PHE240 SER241 GLN242 SER243 ALA244 CYS245 ASN246 GLU247 PRO248 ASP249 PHE250 GLU251 PHE252 ASN253 ASP254 ILE255 LEU256 GLU257 GLY258 ILE259 GLN260 THR261 LEU262 PRO263 PRO264 ALA265 ASN266 VAL267 SER268 LEU269 GLY270 SER271 THR272 GLY273 GLN274 PRO275 PHE276 THR277 MET278 ASP279 SER280 GLY281 ALA282 GLU283 ALA284 THR285 SER286 GLY287 VAL288 VAL289 GLY290 TRP291 GLY292 ASN293 MET294 ASP295 THR296 ILE297 VAL298 ILE299 ARG300 VAL301 SER302 ALA303 PRO304 GLU305 GLY306 ALA307 VAL308 ASN309 SER310 ALA311 ILE312 LEU313 LYS314 ALA315 TRP316 SER317 CYS318 ILE319 GLU320 TYR321 ARG322 PRO323 ASN324 PRO325 ASN326 ALA327 MET328 LEU329 TYR330 GLN331 PHE332 GLY333 HIS334 ASP335 SER336 PRO337 PRO338 LEU339 ASP340 GLU341 VAL342 ALA343 LEU344 GLN345 GLU346 TYR347 ARG348 THR349 VAL350 ALA351 ARG352 SER353 LEU354 PRO355 VAL356 ALA357 VAL358 ILE359 ALA360 ALA361 GLN362 ASN363 ALA364 SER365 MET366 TRP367 GLU368 ARG369 VAL370 LYS371 SER372 ILE373 ILE374 LYS375 SER376 SER377 LEU378 ALA379 ALA380 ALA381 SER382 ASN383
Nucleic acids
Unit 4 U1 U2 U3 C4 U5 C6 U7 U8 U9 U10 A11 U12 C13 U14 U15
Ligands
Unit 5 CA501 CA502 SO4503 EPE504
Unit 6 CA501 CL502 EPE503
Unit 7 CA501 EPE502
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany