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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF GERMLINE ANTIBODY PGT121-GL FAB
Keywords IG FOLD, ANTI HIV, ANTIBODY, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4FQQ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FAB LIGHT CHAIN  L 213 1600 0
2  Protein   FAB HEAVY CHAIN  H 234 1776 0
3  Protein   FAB LIGHT CHAIN  A 211 1585 0
4  Protein   FAB HEAVY CHAIN  B 227 1726 0
5  Protein   FAB LIGHT CHAIN  C 210 1578 0
6  Protein   FAB HEAVY CHAIN  D 226 1725 0
7  Protein   FAB LIGHT CHAIN  E 205 1546 0
8  Protein   FAB HEAVY CHAIN  F 226 1725 0
9  Ligand   FAB LIGHT CHAIN  L 1 0 1
10  Ligand   FAB HEAVY CHAIN  D 1 0 1
11 Water     490 0 490
total       2244 13261 492

Proteins
Unit 1 TYR3 VAL4 LEU5 THR6 GLN7 PRO8 PRO9 SER10 VAL11 SER12 VAL13 ALA14 PRO15 GLY16 GLN17 THR18 ALA19 ARG20 ILE21 THR22 CYS23 GLY24 GLY25 ASN26 ASN27 ILE28 GLY29 SER30 LYS31 SER32 VAL33 HIS34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 GLN42 ALA43 PRO44 VAL45 LEU46 VAL47 VAL48 TYR49 ASP50 ASP51 SER52 ASP53 ARG54 PRO55 SER56 GLY57 ILE58 PRO59 GLU60 ARG61 PHE62 SER63 GLY64 SER65 ASN66 SER67 GLY68 ASN69 THR70 ALA71 THR72 LEU73 THR74 ILE75 SER76 ARG77 VAL78 GLU79 ALA80 GLY81 ASP82 GLU83 ALA84 ASP85 TYR86 TYR87 CYS88 GLN89 VAL90 TRP91 ASP92 SER93 SER94 SER95 ASP95A HIS95B PRO95C TRP96 VAL97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 THR105 VAL106 LEU107 GLY108 GLN109 PRO110 LYS111 ALA112 ALA113 PRO114 SER115 VAL116 THR117 LEU118 PHE119 PRO120 PRO121 SER122 SER123 GLU124 GLU125 LEU126 GLN127 ALA128 ASN129 LYS130 ALA131 THR132 LEU133 VAL134 CYS135 LEU136 ILE137 SER138 ASP139 PHE140 TYR141 PRO142 GLY143 ALA144 VAL145 THR146 VAL147 ALA148 TRP149 LYS150 ALA151 ASP152 SER153 SER154 PRO155 VAL156 LYS157 ALA158 GLY159 VAL160 GLU161 THR162 THR163 THR164 PRO165 SER166 LYS167 GLN168 SER169 ASN170 ASN171 LYS172 TYR173 ALA174 ALA175 SER176 SER177 TYR178 LEU179 SER180 LEU181 THR182 PRO183 GLU184 GLN185 TRP186 LYS187 SER188 HIS189 ARG190 SER191 TYR192 SER193 CYS194 GLN195 VAL196 THR197 HIS198 GLU199 GLY200 SER201 THR202 VAL203 GLU204 LYS205 THR206 VAL207 ALA208 PRO209 THR210 GLU211 CYS212
Unit 2 GLN1 VAL2 GLN3 LEU4 GLN5 GLU6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 LYS13 PRO14 SER15 GLU16 THR17 LEU18 SER19 LEU20 THR21 CYS22 THR23 VAL24 SER25 GLY26 GLY27 SER28 ILE29 SER30 SER31 TYR32 TYR33 TRP34 SER35 TRP36 ILE37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 TYR50 ILE51 TYR52 TYR53 SER54 GLY55 SER56 THR57 ASN58 TYR59 ASN60 PRO61 SER62 LEU63 LYS64 SER65 ARG66 VAL67 THR68 ILE69 SER70 VAL71 ASP72 THR73 SER74 LYS75 ASN76 GLN77 PHE78 SER79 LEU80 LYS81 LEU82 SER82A SER82B VAL82C THR83 ALA84 ALA85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 ARG94 THR95 GLN96 GLN97 GLY98 LYS99 ARG100 ILE100A TYR100B GLY100C VAL100D VAL100E SER100F PHE100G GLY100H ASP100I TYR100J TYR100K TYR100L TYR100M TYR100N TYR100O MET100P ASP101 VAL102 TRP103 GLY104 LYS105 GLY106 THR107 THR108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR131 SER132 GLY133 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 ARG210 VAL211 GLU212 PRO213 LYS214 SER215
Unit 3 TYR3 VAL4 LEU5 THR6 GLN7 PRO8 PRO9 SER10 VAL11 SER12 VAL13 ALA14 PRO15 GLY16 GLN17 THR18 ALA19 ARG20 ILE21 THR22 CYS23 GLY24 GLY25 ASN26 ASN27 ILE28 GLY29 SER30 LYS31 SER32 VAL33 HIS34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 GLN42 ALA43 PRO44 VAL45 LEU46 VAL47 VAL48 TYR49 ASP50 ASP51 SER52 ASP53 ARG54 PRO55 SER56 GLY57 ILE58 PRO59 GLU60 ARG61 PHE62 SER63 GLY64 SER65 ASN66 SER67 GLY68 ASN69 THR70 ALA71 THR72 LEU73 THR74 ILE75 SER76 ARG77 VAL78 GLU79 ALA80 GLY81 ASP82 GLU83 ALA84 ASP85 TYR86 TYR87 CYS88 GLN89 VAL90 TRP91 ASP92 SER93 SER94 SER95 ASP95A HIS95B PRO95C TRP96 VAL97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 THR105 VAL106 LEU107 GLY108 GLN109 PRO110 LYS111 ALA112 ALA113 PRO114 SER115 VAL116 THR117 LEU118 PHE119 PRO120 PRO121 SER122 SER123 GLU124 GLU125 LEU126 GLN127 ALA128 ASN129 LYS130 ALA131 THR132 LEU133 VAL134 CYS135 LEU136 ILE137 SER138 ASP139 PHE140 TYR141 PRO142 GLY143 ALA144 VAL145 THR146 VAL147 ALA148 TRP149 LYS150 ALA151 ASP152 SER153 SER154 PRO155 VAL156 LYS157 ALA158 GLY159 VAL160 GLU161 THR162 THR163 THR164 PRO165 SER166 LYS167 GLN168 SER169 ASN170 ASN171 LYS172 TYR173 ALA174 ALA175 SER176 SER177 TYR178 LEU179 SER180 LEU181 THR182 PRO183 GLU184 GLN185 TRP186 LYS187 SER188 HIS189 ARG190 SER191 TYR192 SER193 CYS194 GLN195 VAL196 THR197 HIS198 GLU199 GLY200 SER201 THR202 VAL203 GLU204 LYS205 THR206 VAL207 ALA208 PRO209 THR210
Unit 4 GLN1 VAL2 GLN3 LEU4 GLN5 GLU6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 LYS13 PRO14 SER15 GLU16 THR17 LEU18 SER19 LEU20 THR21 CYS22 THR23 VAL24 SER25 GLY26 GLY27 SER28 ILE29 SER30 SER31 TYR32 TYR33 TRP34 SER35 TRP36 ILE37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 TYR50 ILE51 TYR52 TYR53 SER54 GLY55 SER56 THR57 ASN58 TYR59 ASN60 PRO61 SER62 LEU63 LYS64 SER65 ARG66 VAL67 THR68 ILE69 SER70 VAL71 ASP72 THR73 SER74 LYS75 ASN76 GLN77 PHE78 SER79 LEU80 LYS81 LEU82 SER82A SER82B VAL82C THR83 ALA84 ALA85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 ARG94 THR95 GLN96 GLN97 GLY98 LYS99 ARG100 ILE100A TYR100B GLY100C VAL100D VAL100E SER100F PHE100G GLY100H ASP100I TYR100J TYR100K TYR100L TYR100M TYR100N TYR100O MET100P ASP101 VAL102 TRP103 GLY104 LYS105 GLY106 THR107 THR108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 SER132 GLY133 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 ARG210 VAL211 GLU212 PRO213
Unit 5 TYR3 VAL4 LEU5 THR6 GLN7 PRO8 PRO9 SER10 VAL11 SER12 VAL13 ALA14 PRO15 GLY16 GLN17 THR18 ALA19 ARG20 ILE21 THR22 CYS23 GLY24 GLY25 ASN26 ASN27 ILE28 GLY29 SER30 LYS31 SER32 VAL33 HIS34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 GLN42 ALA43 PRO44 VAL45 LEU46 VAL47 VAL48 TYR49 ASP50 ASP51 SER52 ASP53 ARG54 PRO55 SER56 GLY57 ILE58 PRO59 GLU60 ARG61 PHE62 SER63 GLY64 SER65 ASN66 SER67 GLY68 ASN69 THR70 ALA71 THR72 LEU73 THR74 ILE75 SER76 ARG77 VAL78 GLU79 ALA80 GLY81 ASP82 GLU83 ALA84 ASP85 TYR86 TYR87 CYS88 GLN89 VAL90 TRP91 ASP92 SER93 SER94 SER95 ASP95A HIS95B PRO95C TRP96 VAL97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 THR105 VAL106 LEU107 GLY108 GLN109 PRO110 LYS111 ALA112 ALA113 PRO114 SER115 VAL116 THR117 LEU118 PHE119 PRO120 PRO121 SER122 SER123 GLU124 GLU125 LEU126 GLN127 ALA128 ASN129 LYS130 ALA131 THR132 LEU133 VAL134 CYS135 LEU136 ILE137 SER138 ASP139 PHE140 TYR141 PRO142 GLY143 ALA144 VAL145 THR146 VAL147 ALA148 TRP149 LYS150 ALA151 ASP152 SER153 SER154 PRO155 VAL156 LYS157 ALA158 GLY159 VAL160 GLU161 THR162 THR163 THR164 PRO165 SER166 LYS167 GLN168 SER169 ASN170 ASN171 LYS172 TYR173 ALA174 ALA175 SER176 SER177 TYR178 LEU179 SER180 LEU181 THR182 PRO183 GLU184 GLN185 TRP186 LYS187 SER188 HIS189 ARG190 SER191 TYR192 SER193 CYS194 GLN195 VAL196 THR197 HIS198 GLU199 GLY200 SER201 THR202 VAL203 GLU204 LYS205 THR206 VAL207 ALA208 PRO209
Unit 6 GLN1 VAL2 GLN3 LEU4 GLN5 GLU6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 LYS13 PRO14 SER15 GLU16 THR17 LEU18 SER19 LEU20 THR21 CYS22 THR23 VAL24 SER25 GLY26 GLY27 SER28 ILE29 SER30 SER31 TYR32 TYR33 TRP34 SER35 TRP36 ILE37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 TYR50 ILE51 TYR52 TYR53 SER54 GLY55 SER56 THR57 ASN58 TYR59 ASN60 PRO61 SER62 LEU63 LYS64 SER65 ARG66 VAL67 THR68 ILE69 SER70 VAL71 ASP72 THR73 SER74 LYS75 ASN76 GLN77 PHE78 SER79 LEU80 LYS81 LEU82 SER82A SER82B VAL82C THR83 ALA84 ALA85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 ARG94 THR95 GLN96 GLN97 GLY98 LYS99 ARG100 ILE100A TYR100B GLY100C VAL100D PHE100G GLY100H ASP100I TYR100J TYR100K TYR100L TYR100M TYR100N TYR100O MET100P ASP101 VAL102 TRP103 GLY104 LYS105 GLY106 THR107 THR108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 ARG210 VAL211 GLU212 PRO213 LYS214
Unit 7 TYR3 VAL4 LEU5 THR6 GLN7 PRO8 PRO9 SER10 VAL11 SER12 VAL13 ALA14 PRO15 GLY16 GLN17 THR18 ALA19 ARG20 ILE21 THR22 CYS23 GLY24 GLY25 ASN26 ASN27 ILE28 GLY29 SER30 LYS31 SER32 VAL33 HIS34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 GLN42 ALA43 PRO44 VAL45 LEU46 VAL47 VAL48 TYR49 ASP50 ASP51 SER52 ASP53 ARG54 PRO55 SER56 GLY57 ILE58 PRO59 GLU60 ARG61 PHE62 SER63 GLY64 SER65 ASN66 SER67 GLY68 ASN69 THR70 ALA71 THR72 LEU73 THR74 ILE75 SER76 ARG77 VAL78 GLU79 ALA80 GLY81 ASP82 GLU83 ALA84 ASP85 TYR86 TYR87 CYS88 GLN89 VAL90 TRP91 ASP92 SER93 SER94 SER95 ASP95A HIS95B PRO95C TRP96 VAL97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 THR105 VAL106 LEU107 GLY108 GLN109 PRO110 LYS111 ALA112 ALA113 PRO114 SER115 VAL116 THR117 LEU118 PHE119 PRO120 PRO121 SER122 SER123 GLU124 GLU125 LEU126 GLN127 ALA128 ASN129 LYS130 ALA131 THR132 LEU133 VAL134 CYS135 LEU136 ILE137 SER138 ASP139 PHE140 TYR141 PRO142 GLY143 ALA144 VAL145 THR146 VAL147 ALA148 TRP149 LYS150 ALA151 ASP152 SER153 SER154 VAL160 GLU161 THR162 THR163 THR164 PRO165 SER166 LYS167 GLN168 SER169 ASN170 ASN171 LYS172 TYR173 ALA174 ALA175 SER176 SER177 TYR178 LEU179 SER180 LEU181 THR182 PRO183 GLU184 GLN185 TRP186 LYS187 SER188 HIS189 ARG190 SER191 TYR192 SER193 CYS194 GLN195 VAL196 THR197 HIS198 GLU199 GLY200 SER201 THR202 VAL203 GLU204 LYS205 THR206 VAL207 ALA208 PRO209
Unit 8 GLN1 VAL2 GLN3 LEU4 GLN5 GLU6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 LYS13 PRO14 SER15 GLU16 THR17 LEU18 SER19 LEU20 THR21 CYS22 THR23 VAL24 SER25 GLY26 GLY27 SER28 ILE29 SER30 SER31 TYR32 TYR33 TRP34 SER35 TRP36 ILE37 ARG38 GLN39 PRO40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 TYR50 ILE51 TYR52 TYR53 SER54 GLY55 SER56 THR57 ASN58 TYR59 ASN60 PRO61 SER62 LEU63 LYS64 SER65 ARG66 VAL67 THR68 ILE69 SER70 VAL71 ASP72 THR73 SER74 LYS75 ASN76 GLN77 PHE78 SER79 LEU80 LYS81 LEU82 SER82A SER82B VAL82C THR83 ALA84 ALA85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 ARG94 THR95 GLN96 GLN97 GLY98 LYS99 ARG100 ILE100A TYR100B GLY100C VAL100D PHE100G GLY100H ASP100I TYR100J TYR100K TYR100L TYR100M TYR100N TYR100O MET100P ASP101 VAL102 TRP103 GLY104 LYS105 GLY106 THR107 THR108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 ARG210 VAL211 GLU212 PRO213 LYS214 SER215

Ligands
Unit 9 NA400
Unit 10 NA400

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany