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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN NECTIN-1 FULL ECTODOMAIN (D1-D3)
Keywords IMMUNOGLOBULIN-LIKE DOMAIN, IG DOMAIN, VIRAL ENTRY RECEPTOR, ADHESION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4FMF     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   POLIOVIRUS RECEPTOR-RELATED PROTEIN 1  A 302 2376 0
2  Protein   POLIOVIRUS RECEPTOR-RELATED PROTEIN 1  B 299 2349 0
3  Protein   POLIOVIRUS RECEPTOR-RELATED PROTEIN 1  C 301 2369 0
4  Protein   POLIOVIRUS RECEPTOR-RELATED PROTEIN 1  D 302 2376 0
5  Ligand    E 2 0 28
6  Ligand    F 2 0 28
7  Ligand    G 2 0 28
8  Ligand    H 2 0 28
9  Ligand   POLIOVIRUS RECEPTOR-RELATED PROTEIN 1  A 1 0 3
10  Ligand   POLIOVIRUS RECEPTOR-RELATED PROTEIN 1  B 1 0 3
11  Ligand   POLIOVIRUS RECEPTOR-RELATED PROTEIN 1  C 1 0 3
12  Ligand   POLIOVIRUS RECEPTOR-RELATED PROTEIN 1  D 1 0 3
13 Water     4 0 4
total       1220 9470 128
Proteins
Unit 1 ASN36 ASP37 SER38 MET39 TYR40 GLY41 PHE42 ILE43 GLY44 THR45 ASP46 VAL47 VAL48 LEU49 HIS50 CYS51 SER52 PHE53 ALA54 ASN55 PRO56 LEU57 PRO58 SER59 VAL60 LYS61 ILE62 THR63 GLN64 VAL65 THR66 TRP67 GLN68 LYS69 SER70 THR71 ASN72 GLY73 SER74 LYS75 GLN76 ASN77 VAL78 ALA79 ILE80 TYR81 ASN82 PRO83 SER84 MET85 GLY86 VAL87 SER88 VAL89 LEU90 ALA91 PRO92 TYR93 ARG94 GLU95 ARG96 VAL97 GLU98 PHE99 LEU100 ARG101 PRO102 SER103 PHE104 THR105 ASP106 GLY107 THR108 ILE109 ARG110 LEU111 SER112 ARG113 LEU114 GLU115 LEU116 GLU117 ASP118 GLU119 GLY120 VAL121 TYR122 ILE123 CYS124 GLU125 PHE126 ALA127 THR128 PHE129 PRO130 THR131 GLY132 ASN133 ARG134 GLU135 SER136 GLN137 LEU138 ASN139 LEU140 THR141 VAL142 MET143 ALA144 LYS145 PRO146 THR147 ASN148 TRP149 ILE150 GLU151 GLY152 THR153 GLN154 ALA155 VAL156 LEU157 ARG158 ALA159 LYS160 LYS161 GLY162 GLN163 ASP164 ASP165 LYS166 VAL167 LEU168 VAL169 ALA170 THR171 CYS172 THR173 SER174 ALA175 ASN176 GLY177 LYS178 PRO179 PRO180 SER181 VAL182 VAL183 SER184 TRP185 GLU186 THR187 ARG188 LEU189 LYS190 GLY191 GLU192 ALA193 GLU194 TYR195 GLN196 GLU197 ILE198 ARG199 ASN200 PRO201 ASN202 GLY203 THR204 VAL205 THR206 VAL207 ILE208 SER209 ARG210 TYR211 ARG212 LEU213 VAL214 PRO215 SER216 ARG217 GLU218 ALA219 HIS220 GLN221 GLN222 SER223 LEU224 ALA225 CYS226 ILE227 VAL228 ASN229 TYR230 HIS231 MET232 ASP233 ARG234 PHE235 LYS236 GLU237 SER238 LEU239 THR240 LEU241 ASN242 VAL243 GLN244 TYR245 GLU246 PRO247 GLU248 VAL249 THR250 ILE251 GLU252 GLY253 PHE254 ASP255 GLY256 ASN257 TRP258 TYR259 LEU260 GLN261 ARG262 MET263 ASP264 VAL265 LYS266 LEU267 THR268 CYS269 LYS270 ALA271 ASP272 ALA273 ASN274 PRO275 PRO276 ALA277 THR278 GLU279 TYR280 HIS281 TRP282 THR283 THR284 LEU285 ASN286 GLY287 SER288 LEU289 PRO290 LYS291 GLY292 VAL293 GLU294 ALA295 GLN296 ASN297 ARG298 THR299 LEU300 PHE301 PHE302 LYS303 GLY304 PRO305 ILE306 ASN307 TYR308 SER309 LEU310 ALA311 GLY312 THR313 TYR314 ILE315 CYS316 GLU317 ALA318 THR319 ASN320 PRO321 ILE322 GLY323 THR324 ARG325 SER326 GLY327 GLN328 VAL329 GLU330 VAL331 ASN332 ILE333 THR334 GLU335 PHE336 PRO337
Unit 2 ASN36 ASP37 SER38 MET39 TYR40 GLY41 PHE42 ILE43 GLY44 THR45 ASP46 VAL47 VAL48 LEU49 HIS50 CYS51 SER52 PHE53 ALA54 ASN55 PRO56 LEU57 PRO58 SER59 VAL60 LYS61 ILE62 THR63 GLN64 VAL65 THR66 TRP67 GLN68 LYS69 SER70 THR71 ASN72 GLY73 SER74 LYS75 GLN76 ASN77 VAL78 ALA79 ILE80 TYR81 ASN82 PRO83 SER84 MET85 GLY86 VAL87 SER88 VAL89 LEU90 ALA91 PRO92 TYR93 ARG94 GLU95 ARG96 VAL97 GLU98 PHE99 LEU100 ARG101 PRO102 SER103 PHE104 THR105 ASP106 GLY107 THR108 ILE109 ARG110 LEU111 SER112 ARG113 LEU114 GLU115 LEU116 GLU117 ASP118 GLU119 GLY120 VAL121 TYR122 ILE123 CYS124 GLU125 PHE126 ALA127 THR128 PHE129 PRO130 THR131 GLY132 ASN133 ARG134 GLU135 SER136 GLN137 LEU138 ASN139 LEU140 THR141 VAL142 MET143 ALA144 LYS145 PRO146 THR147 ASN148 TRP149 ILE150 GLU151 GLY152 THR153 GLN154 ALA155 VAL156 LEU157 ARG158 ALA159 LYS160 LYS161 GLY162 GLN163 ASP164 ASP165 LYS166 VAL167 LEU168 VAL169 ALA170 THR171 CYS172 THR173 SER174 ALA175 ASN176 GLY177 LYS178 PRO179 PRO180 SER181 VAL182 VAL183 SER184 TRP185 GLU186 THR187 ARG188 LEU189 LYS190 GLY191 GLU192 ALA193 GLU194 TYR195 GLN196 GLU197 ILE198 ARG199 ASN200 PRO201 ASN202 GLY203 THR204 VAL205 THR206 VAL207 ILE208 SER209 ARG210 TYR211 ARG212 LEU213 VAL214 PRO215 SER216 ARG217 GLU218 ALA219 HIS220 GLN221 GLN222 SER223 LEU224 ALA225 CYS226 ILE227 VAL228 ASN229 TYR230 HIS231 MET232 ASP233 ARG234 PHE235 LYS236 GLU237 SER238 LEU239 THR240 LEU241 ASN242 VAL243 GLN244 TYR245 GLU246 PRO247 GLU248 VAL249 THR250 ILE251 GLU252 GLY253 PHE254 ASP255 GLY256 ASN257 TRP258 TYR259 LEU260 GLN261 ARG262 MET263 ASP264 VAL265 LYS266 LEU267 THR268 CYS269 LYS270 ALA271 ASP272 ALA273 ASN274 PRO275 PRO276 ALA277 THR278 GLU279 TYR280 HIS281 TRP282 THR283 THR284 LEU285 ASN286 GLY287 SER288 LEU289 PRO290 LYS291 GLY292 VAL293 GLU294 ALA295 GLN296 ASN297 ARG298 THR299 LEU300 PHE301 PHE302 LYS303 GLY304 PRO305 ILE306 ASN307 TYR308 SER309 LEU310 ALA311 GLY312 THR313 TYR314 ILE315 CYS316 GLU317 ALA318 THR319 ASN320 PRO321 ILE322 GLY323 THR324 ARG325 SER326 GLY327 GLN328 VAL329 GLU330 VAL331 ASN332 ILE333 THR334
Unit 3 ASN36 ASP37 SER38 MET39 TYR40 GLY41 PHE42 ILE43 GLY44 THR45 ASP46 VAL47 VAL48 LEU49 HIS50 CYS51 SER52 PHE53 ALA54 ASN55 PRO56 LEU57 PRO58 SER59 VAL60 LYS61 ILE62 THR63 GLN64 VAL65 THR66 TRP67 GLN68 LYS69 SER70 THR71 ASN72 GLY73 SER74 LYS75 GLN76 ASN77 VAL78 ALA79 ILE80 TYR81 ASN82 PRO83 SER84 MET85 GLY86 VAL87 SER88 VAL89 LEU90 ALA91 PRO92 TYR93 ARG94 GLU95 ARG96 VAL97 GLU98 PHE99 LEU100 ARG101 PRO102 SER103 PHE104 THR105 ASP106 GLY107 THR108 ILE109 ARG110 LEU111 SER112 ARG113 LEU114 GLU115 LEU116 GLU117 ASP118 GLU119 GLY120 VAL121 TYR122 ILE123 CYS124 GLU125 PHE126 ALA127 THR128 PHE129 PRO130 THR131 GLY132 ASN133 ARG134 GLU135 SER136 GLN137 LEU138 ASN139 LEU140 THR141 VAL142 MET143 ALA144 LYS145 PRO146 THR147 ASN148 TRP149 ILE150 GLU151 GLY152 THR153 GLN154 ALA155 VAL156 LEU157 ARG158 ALA159 LYS160 LYS161 GLY162 GLN163 ASP164 ASP165 LYS166 VAL167 LEU168 VAL169 ALA170 THR171 CYS172 THR173 SER174 ALA175 ASN176 GLY177 LYS178 PRO179 PRO180 SER181 VAL182 VAL183 SER184 TRP185 GLU186 THR187 ARG188 LEU189 LYS190 GLY191 GLU192 ALA193 GLU194 TYR195 GLN196 GLU197 ILE198 ARG199 ASN200 PRO201 ASN202 GLY203 THR204 VAL205 THR206 VAL207 ILE208 SER209 ARG210 TYR211 ARG212 LEU213 VAL214 PRO215 SER216 ARG217 GLU218 ALA219 HIS220 GLN221 GLN222 SER223 LEU224 ALA225 CYS226 ILE227 VAL228 ASN229 TYR230 HIS231 MET232 ASP233 ARG234 PHE235 LYS236 GLU237 SER238 LEU239 THR240 LEU241 ASN242 VAL243 GLN244 TYR245 GLU246 PRO247 GLU248 VAL249 THR250 ILE251 GLU252 GLY253 PHE254 ASP255 GLY256 ASN257 TRP258 TYR259 LEU260 GLN261 ARG262 MET263 ASP264 VAL265 LYS266 LEU267 THR268 CYS269 LYS270 ALA271 ASP272 ALA273 ASN274 PRO275 PRO276 ALA277 THR278 GLU279 TYR280 HIS281 TRP282 THR283 THR284 LEU285 ASN286 GLY287 SER288 LEU289 PRO290 LYS291 GLY292 VAL293 GLU294 ALA295 GLN296 ASN297 ARG298 THR299 LEU300 PHE301 PHE302 LYS303 GLY304 PRO305 ILE306 ASN307 TYR308 SER309 LEU310 ALA311 GLY312 THR313 TYR314 ILE315 CYS316 GLU317 ALA318 THR319 ASN320 PRO321 ILE322 GLY323 THR324 ARG325 SER326 GLY327 GLN328 VAL329 GLU330 VAL331 ASN332 ILE333 THR334 GLU335 PHE336
Unit 4 ASN36 ASP37 SER38 MET39 TYR40 GLY41 PHE42 ILE43 GLY44 THR45 ASP46 VAL47 VAL48 LEU49 HIS50 CYS51 SER52 PHE53 ALA54 ASN55 PRO56 LEU57 PRO58 SER59 VAL60 LYS61 ILE62 THR63 GLN64 VAL65 THR66 TRP67 GLN68 LYS69 SER70 THR71 ASN72 GLY73 SER74 LYS75 GLN76 ASN77 VAL78 ALA79 ILE80 TYR81 ASN82 PRO83 SER84 MET85 GLY86 VAL87 SER88 VAL89 LEU90 ALA91 PRO92 TYR93 ARG94 GLU95 ARG96 VAL97 GLU98 PHE99 LEU100 ARG101 PRO102 SER103 PHE104 THR105 ASP106 GLY107 THR108 ILE109 ARG110 LEU111 SER112 ARG113 LEU114 GLU115 LEU116 GLU117 ASP118 GLU119 GLY120 VAL121 TYR122 ILE123 CYS124 GLU125 PHE126 ALA127 THR128 PHE129 PRO130 THR131 GLY132 ASN133 ARG134 GLU135 SER136 GLN137 LEU138 ASN139 LEU140 THR141 VAL142 MET143 ALA144 LYS145 PRO146 THR147 ASN148 TRP149 ILE150 GLU151 GLY152 THR153 GLN154 ALA155 VAL156 LEU157 ARG158 ALA159 LYS160 LYS161 GLY162 GLN163 ASP164 ASP165 LYS166 VAL167 LEU168 VAL169 ALA170 THR171 CYS172 THR173 SER174 ALA175 ASN176 GLY177 LYS178 PRO179 PRO180 SER181 VAL182 VAL183 SER184 TRP185 GLU186 THR187 ARG188 LEU189 LYS190 GLY191 GLU192 ALA193 GLU194 TYR195 GLN196 GLU197 ILE198 ARG199 ASN200 PRO201 ASN202 GLY203 THR204 VAL205 THR206 VAL207 ILE208 SER209 ARG210 TYR211 ARG212 LEU213 VAL214 PRO215 SER216 ARG217 GLU218 ALA219 HIS220 GLN221 GLN222 SER223 LEU224 ALA225 CYS226 ILE227 VAL228 ASN229 TYR230 HIS231 MET232 ASP233 ARG234 PHE235 LYS236 GLU237 SER238 LEU239 THR240 LEU241 ASN242 VAL243 GLN244 TYR245 GLU246 PRO247 GLU248 VAL249 THR250 ILE251 GLU252 GLY253 PHE254 ASP255 GLY256 ASN257 TRP258 TYR259 LEU260 GLN261 ARG262 MET263 ASP264 VAL265 LYS266 LEU267 THR268 CYS269 LYS270 ALA271 ASP272 ALA273 ASN274 PRO275 PRO276 ALA277 THR278 GLU279 TYR280 HIS281 TRP282 THR283 THR284 LEU285 ASN286 GLY287 SER288 LEU289 PRO290 LYS291 GLY292 VAL293 GLU294 ALA295 GLN296 ASN297 ARG298 THR299 LEU300 PHE301 PHE302 LYS303 GLY304 PRO305 ILE306 ASN307 TYR308 SER309 LEU310 ALA311 GLY312 THR313 TYR314 ILE315 CYS316 GLU317 ALA318 THR319 ASN320 PRO321 ILE322 GLY323 THR324 ARG325 SER326 GLY327 GLN328 VAL329 GLU330 VAL331 ASN332 ILE333 THR334 GLU335 PHE336 PRO337
Ligands
Unit 5 NAG1 NAG2
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 FMT403
Unit 10 FMT403
Unit 11 FMT403
Unit 12 FMT403
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany