4FLY - Sequence, Chains, Asymmetric and Biological Units

• Title: PYROCOCCUS ABYSSI B FAMILY DNA POLYMERASE BOUND TO A DSDNA, MODE
• Keywords: DNA POLYMERASE, DNA BINDING, TRANSFERASE-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4FLY	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Other macromolecule	TEMPLATE STRAND	T	13	266	0
2	Other macromolecule	PRIMER STRAND	P	8	160	0
3	Protein	DNA POLYMERASE 1	A	755	5984	0
4	Ligand	DNA POLYMERASE 1	A	3	0	14
5	Water			563	0	563
total				1342	6410	577

Proteins

Unit 3

ALA -1 GLY 0 MET 1 ILE 2 ILE 3 ASP 4 ALA 5 ASP 6 TYR 7 ILE 8 THR 9 GLU 10 ASP 11 GLY 12 LYS 13 PRO 14 ILE 15 ILE 16 ARG 17 ILE 18 PHE 19 LYS 20 LYS 21 GLU 22 LYS 23 GLY 24 GLU 25 PHE 26 LYS 27 VAL 28 GLU 29 TYR 30 ASP 31 ARG 32 THR 33 PHE 34 ARG 35 PRO 36 TYR 37 ILE 38 TYR 39 ALA 40 LEU 41 LEU 42 LYS 43 ASP 44 ASP 45 SER 46 ALA 47 ILE 48 ASP 49 GLU 50 VAL 51 LYS 52 LYS 53 ILE 54 THR 55 ALA 56 GLU 57 ARG 58 HIS 59 GLY 60 LYS 61 ILE 62 VAL 63 ARG 64 ILE 65 THR 66 GLU 67 VAL 68 GLU 69 LYS 70 VAL 71 GLN 72 LYS 73 LYS 74 PHE 75 LEU 76 GLY 77 ARG 78 PRO 79 ILE 80 GLU 81 VAL 82 TRP 83 LYS 84 LEU 85 TYR 86 LEU 87 GLU 88 HIS 89 PRO 90 GLN 91 ASP 92 VAL 93 PRO 94 ALA 95 ILE 96 ARG 97 GLU 98 LYS 99 ILE 100 ARG 101 GLU 102 HIS 103 PRO 104 ALA 105 VAL 106 VAL 107 ASP 108 ILE 109 PHE 110 GLU 111 TYR 112 ASP 113 ILE 114 PRO 115 PHE 116 ALA 117 LYS 118 ARG 119 TYR 120 LEU 121 ILE 122 ASP 123 LYS 124 GLY 125 LEU 126 THR 127 PRO 128 MET 129 GLU 130 GLY 131 ASN 132 GLU 133 GLU 134 LEU 135 THR 136 PHE 137 LEU 138 ALA 139 VAL 140 ASP 141 ILE 142 GLU 143 THR 144 LEU 145 TYR 146 HIS 147 GLU 148 GLY 149 GLU 150 GLU 151 PHE 152 GLY 153 LYS 154 GLY 155 PRO 156 ILE 157 ILE 158 MET 159 ILE 160 SER 161 TYR 162 ALA 163 ASP 164 GLU 165 GLU 166 GLY 167 ALA 168 LYS 169 VAL 170 ILE 171 THR 172 TRP 173 LYS 174 SER 175 ILE 176 ASP 177 LEU 178 PRO 179 TYR 180 VAL 181 GLU 182 VAL 183 VAL 184 SER 185 SER 186 GLU 187 ARG 188 GLU 189 MET 190 ILE 191 LYS 192 ARG 193 LEU 194 VAL 195 LYS 196 VAL 197 ILE 198 ARG 199 GLU 200 LYS 201 ASP 202 PRO 203 ASP 204 VAL 205 ILE 206 ILE 207 THR 208 TYR 209 ASN 210 GLY 211 ASP 212 ASN 213 PHE 214 ALA 215 PHE 216 PRO 217 TYR 218 LEU 219 LEU 220 LYS 221 ARG 222 ALA 223 GLU 224 LYS 225 LEU 226 GLY 227 ILE 228 LYS 229 LEU 230 PRO 231 LEU 232 GLY 233 ARG 234 ASP 235 ASN 236 SER 237 GLU 238 PRO 239 LYS 240 MET 241 GLN 242 ARG 243 MET 244 GLY 245 ASP 246 SER 247 LEU 248 ALA 249 VAL 250 GLU 251 ILE 252 LYS 253 GLY 254 ARG 255 ILE 256 HIS 257 PHE 258 ASP 259 LEU 260 PHE 261 PRO 262 VAL 263 ILE 264 ARG 265 ARG 266 THR 267 ILE 268 ASN 269 LEU 270 PRO 271 THR 272 TYR 273 THR 274 LEU 275 GLU 276 ALA 277 VAL 278 TYR 279 GLU 280 ALA 281 ILE 282 PHE 283 GLY 284 LYS 285 SER 286 LYS 287 GLU 288 LYS 289 VAL 290 TYR 291 ALA 292 HIS 293 GLU 294 ILE 295 ALA 296 GLU 297 ALA 298 TRP 299 GLU 300 THR 301 GLY 302 LYS 303 GLY 304 LEU 305 GLU 306 ARG 307 VAL 308 ALA 309 LYS 310 TYR 311 SER 312 MET 313 GLU 314 ASP 315 ALA 316 LYS 317 VAL 318 THR 319 PHE 320 GLU 321 LEU 322 GLY 323 LYS 324 GLU 325 PHE 326 PHE 327 PRO 328 MET 329 GLU 330 ALA 331 GLN 332 LEU 333 ALA 334 ARG 335 LEU 336 VAL 337 GLY 338 GLN 339 PRO 340 VAL 341 TRP 342 ASP 343 VAL 344 SER 345 ARG 346 SER 347 SER 348 THR 349 GLY 350 ASN 351 LEU 352 VAL 353 GLU 354 TRP 355 PHE 356 LEU 357 LEU 358 ARG 359 LYS 360 ALA 361 TYR 362 GLU 363 ARG 364 ASN 365 GLU 366 LEU 367 ALA 368 PRO 369 ASN 370 LYS 371 PRO 372 ASP 373 GLU 374 ARG 375 GLU 376 TYR 377 GLU 378 ARG 379 ARG 380 LEU 381 ARG 382 GLU 383 SER 384 TYR 385 GLU 386 LYS 391 GLU 392 PRO 393 GLU 394 LYS 395 GLY 396 LEU 397 TRP 398 GLU 399 GLY 400 ILE 401 VAL 402 SER 403 LEU 404 ASP 405 PHE 406 ARG 407 SER 408 LEU 409 TYR 410 PRO 411 SER 412 ILE 413 ILE 414 ILE 415 THR 416 HIS 417 ASN 418 VAL 419 SER 420 PRO 421 ASP 422 THR 423 LEU 424 ASN 425 ARG 426 GLU 427 ASN 428 CYS 429 LYS 430 GLU 431 TYR 432 ASP 433 VAL 434 ALA 435 PRO 436 GLN 437 VAL 438 GLY 439 HIS 440 ARG 441 PHE 442 CYS 443 LYS 444 ASP 445 PHE 446 PRO 447 GLY 448 PHE 449 ILE 450 PRO 451 SER 452 LEU 453 LEU 454 GLY 455 ASN 456 LEU 457 LEU 458 GLU 459 GLU 460 ARG 461 GLN 462 LYS 463 ILE 464 LYS 465 LYS 466 ARG 467 MET 468 LYS 469 GLU 470 SER 471 LYS 472 ASP 473 PRO 474 VAL 475 GLU 476 LYS 477 LYS 478 LEU 479 LEU 480 ASP 481 TYR 482 ARG 483 GLN 484 ARG 485 ALA 486 ILE 487 LYS 488 ILE 489 LEU 490 ALA 491 ASN 492 SER 493 TYR 494 TYR 495 GLY 496 TYR 497 TYR 498 GLY 499 TYR 500 ALA 501 LYS 502 ALA 503 ARG 504 TRP 505 TYR 506 CYS 507 LYS 508 GLU 509 CYS 510 ALA 511 GLU 512 SER 513 VAL 514 THR 515 ALA 516 TRP 517 GLY 518 ARG 519 GLN 520 TYR 521 ILE 522 ASP 523 LEU 524 VAL 525 ARG 526 ARG 527 GLU 528 LEU 529 GLU 530 SER 531 ARG 532 GLY 533 PHE 534 LYS 535 VAL 536 LEU 537 TYR 538 ILE 539 ASP 540 THR 541 ASP 542 GLY 543 LEU 544 TYR 545 ALA 546 THR 547 ILE 548 PRO 549 GLY 550 ALA 551 LYS 552 HIS 553 GLU 554 GLU 555 ILE 556 LYS 557 GLU 558 LYS 559 ALA 560 LEU 561 LYS 562 PHE 563 VAL 564 GLU 565 TYR 566 ILE 567 ASN 568 SER 569 LYS 570 LEU 571 PRO 572 GLY 573 LEU 574 LEU 575 GLU 576 LEU 577 GLU 578 TYR 579 GLU 580 GLY 581 PHE 582 TYR 583 ALA 584 ARG 585 GLY 586 PHE 587 PHE 588 VAL 589 THR 590 LYS 591 LYS 592 LYS 593 TYR 594 ALA 595 LEU 596 ILE 597 ASP 598 GLU 599 GLU 600 GLY 601 LYS 602 ILE 603 VAL 604 THR 605 ARG 606 GLY 607 LEU 608 GLU 609 ILE 610 VAL 611 ARG 612 ARG 613 ASP 614 TRP 615 SER 616 GLU 617 ILE 618 ALA 619 LYS 620 GLU 621 THR 622 GLN 623 ALA 624 LYS 625 VAL 626 LEU 627 GLU 628 ALA 629 ILE 630 LEU 631 LYS 632 HIS 633 GLY 634 ASN 635 VAL 636 ASP 637 GLU 638 ALA 639 VAL 640 LYS 641 ILE 642 VAL 643 LYS 644 GLU 645 VAL 646 THR 647 GLU 648 LYS 649 LEU 650 SER 651 LYS 652 TYR 653 GLU 654 ILE 655 PRO 656 PRO 657 GLU 658 LYS 659 LEU 660 VAL 661 ILE 662 TYR 663 GLU 664 GLN 665 ILE 666 THR 667 ARG 668 PRO 669 LEU 670 SER 671 GLU 672 TYR 673 LYS 674 ALA 675 ILE 676 GLY 677 PRO 678 HIS 679 VAL 680 ALA 681 VAL 682 ALA 683 LYS 684 ARG 685 LEU 686 ALA 687 ALA 688 LYS 689 GLY 690 VAL 691 LYS 692 VAL 693 LYS 694 PRO 695 GLY 696 MET 697 VAL 698 ILE 699 GLY 700 TYR 701 ILE 702 VAL 703 LEU 704 ARG 705 GLY 706 ASP 707 GLY 708 PRO 709 ILE 710 SER 711 LYS 712 ARG 713 ALA 714 ILE 715 ALA 716 ILE 717 GLU 718 GLU 719 PHE 720 ASP 721 PRO 722 LYS 723 LYS 724 HIS 725 LYS 726 TYR 727 ASP 728 ALA 729 GLU 730 TYR 731 TYR 732 ILE 733 GLU 734 ASN 735 GLN 736 VAL 737 LEU 738 PRO 739 ALA 740 VAL 741 GLU 742 ARG 743 ILE 744 LEU 745 ARG 746 ALA 747 PHE 748 GLY 749 TYR 750 ARG 751 LYS 752 GLU 753 ASP 754 LEU 755 LYS 756 TYR 757

Other macromolecules

Unit 1	DG 1 DU 2 DG 3 DT 4 DA 5 DC 6 DG 7 DT 8 DG 9 DA 10 DT 11 DC 12 DG 13
Unit 2	DC 1 DG 2 DA 3 DT 4 DC 5 DA 6 DC 7 DG 8

Ligands

Unit 4

MG 801 MG 802 MES 803