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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF PYRIDOXAL BIOSYNTHESIS LYASE PDXS FROM HORIKOSHII
Keywords PYROCOCCUS HORIKOSHII, PDXS, PYRIDOXAL BIOSYNTHESIS LYASE, P 5 -PHOSPHATE (PLP), LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4FIQ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PYRIDOXAL BIOSYNTHESIS LYASE PDXS  A 315 2424 0
2  Protein   PYRIDOXAL BIOSYNTHESIS LYASE PDXS  B 321 2472 0
3  Protein   PYRIDOXAL BIOSYNTHESIS LYASE PDXS  C 321 2472 0
4  Protein   PYRIDOXAL BIOSYNTHESIS LYASE PDXS  D 321 2472 0
5  Protein   PYRIDOXAL BIOSYNTHESIS LYASE PDXS  E 321 2472 0
6  Protein   PYRIDOXAL BIOSYNTHESIS LYASE PDXS  F 321 2472 0
7 Water     344 0 344
total       2264 14784 344
Proteins
Unit 1 ASP2 LYS3 LEU4 LYS5 ILE6 ILE7 MET8 GLU9 LYS10 GLY11 THR12 GLU13 ARG14 LEU15 LYS16 ARG17 GLY18 PHE19 ALA20 LYS21 MET22 VAL23 LYS24 GLY25 GLY26 VAL27 ILE28 MET29 ASP30 VAL31 THR32 ASN33 ALA34 GLU35 GLN36 ALA37 ARG38 ILE39 ALA40 GLU41 GLU42 ALA43 GLY44 ALA45 VAL46 ALA47 VAL48 MET49 ALA50 LEU51 HIS52 LYS53 VAL54 PRO55 ALA56 ASP57 ILE58 ARG59 LYS60 ALA61 GLY62 GLY63 VAL64 ALA65 ARG66 MET67 ALA68 PRO69 VAL70 GLU71 LYS72 ILE73 GLN74 GLU75 ILE76 MET77 ASP78 ALA79 VAL80 THR81 ILE82 PRO83 VAL84 MET85 ALA86 LYS87 CYS88 ARG89 ILE90 GLY91 HIS92 GLU93 ALA94 GLU95 ALA96 ARG97 ILE98 LEU99 GLU100 ALA101 LEU102 GLY103 VAL104 ASP105 MET106 ILE107 ASP108 GLU109 SER110 GLU111 VAL112 LEU113 THR114 PRO115 ALA116 ASP117 PRO118 PHE119 PHE120 HIS121 ILE122 TYR123 LYS124 LYS125 LYS126 PHE127 THR128 ALA129 PRO130 PHE131 VAL132 CYS133 GLY134 ALA135 ARG136 ASN137 LEU138 GLY139 GLU140 ALA141 VAL142 ARG143 ARG144 ILE145 TRP146 GLU147 GLY148 ALA149 ALA150 MET151 ILE152 ARG153 THR154 LYS155 GLY156 GLU157 ALA158 GLY159 THR160 GLY161 ASN162 ILE163 ILE164 GLU165 ALA166 VAL167 ARG168 HIS169 VAL170 ARG171 LEU172 VAL173 ASN174 GLU175 ASN176 ILE177 ARG178 LEU179 ILE180 GLN181 ARG182 MET183 THR184 ASP185 GLU186 GLU187 ILE188 TYR189 GLY190 VAL191 ALA192 GLU193 LYS194 PHE195 ALA196 GLU197 PRO198 TYR199 LEU200 ARG201 LEU202 ALA203 PHE204 SER205 VAL206 LYS207 GLU208 ILE209 SER210 GLY211 LEU212 PRO213 LYS214 ARG215 VAL216 LEU217 GLU218 ASN219 GLU220 PRO221 ILE222 TYR223 GLU224 GLY225 PHE226 THR227 TYR228 ARG229 GLU230 ILE231 VAL232 GLU233 ASP234 ILE235 TYR236 LYS237 ILE238 LEU239 LEU240 GLU241 ILE242 LYS243 LYS244 LEU245 GLY246 ARG247 LEU248 PRO249 VAL250 VAL251 ASN252 PHE253 ALA254 ALA255 GLY256 GLY257 VAL258 ALA259 THR260 PRO261 ALA262 ASP263 ALA264 ALA265 LEU266 MET267 MET268 ALA269 MET270 GLY271 MET272 ASP273 GLY274 VAL275 PHE276 VAL277 GLY278 SER279 GLY280 ILE281 PHE282 LYS283 SER284 SER285 ASN286 PRO287 PRO288 LYS289 MET290 ALA291 ARG292 ALA293 ILE294 VAL295 GLU296 ALA297 VAL298 ASN299 HIS300 TRP301 ASP302 GLU303 PRO304 ASP305 VAL306 LEU307 ALA308 GLU309 ILE310 SER311 ARG312 GLU313 ILE314 GLY315 GLU316
Unit 2 ASP2 LYS3 LEU4 LYS5 ILE6 ILE7 MET8 GLU9 LYS10 GLY11 THR12 GLU13 ARG14 LEU15 LYS16 ARG17 GLY18 PHE19 ALA20 LYS21 MET22 VAL23 LYS24 GLY25 GLY26 VAL27 ILE28 MET29 ASP30 VAL31 THR32 ASN33 ALA34 GLU35 GLN36 ALA37 ARG38 ILE39 ALA40 GLU41 GLU42 ALA43 GLY44 ALA45 VAL46 ALA47 VAL48 MET49 ALA50 LEU51 HIS52 LYS53 VAL54 PRO55 ALA56 ASP57 ILE58 ARG59 LYS60 ALA61 GLY62 GLY63 VAL64 ALA65 ARG66 MET67 ALA68 PRO69 VAL70 GLU71 LYS72 ILE73 GLN74 GLU75 ILE76 MET77 ASP78 ALA79 VAL80 THR81 ILE82 PRO83 VAL84 MET85 ALA86 LYS87 CYS88 ARG89 ILE90 GLY91 HIS92 GLU93 ALA94 GLU95 ALA96 ARG97 ILE98 LEU99 GLU100 ALA101 LEU102 GLY103 VAL104 ASP105 MET106 ILE107 ASP108 GLU109 SER110 GLU111 VAL112 LEU113 THR114 PRO115 ALA116 ASP117 PRO118 PHE119 PHE120 HIS121 ILE122 TYR123 LYS124 LYS125 LYS126 PHE127 THR128 ALA129 PRO130 PHE131 VAL132 CYS133 GLY134 ALA135 ARG136 ASN137 LEU138 GLY139 GLU140 ALA141 VAL142 ARG143 ARG144 ILE145 TRP146 GLU147 GLY148 ALA149 ALA150 MET151 ILE152 ARG153 THR154 LYS155 GLY156 GLU157 ALA158 GLY159 THR160 GLY161 ASN162 ILE163 ILE164 GLU165 ALA166 VAL167 ARG168 HIS169 VAL170 ARG171 LEU172 VAL173 ASN174 GLU175 ASN176 ILE177 ARG178 LEU179 ILE180 GLN181 ARG182 MET183 THR184 ASP185 GLU186 GLU187 ILE188 TYR189 GLY190 VAL191 ALA192 GLU193 LYS194 PHE195 ALA196 GLU197 PRO198 TYR199 LEU200 ARG201 LEU202 ALA203 PHE204 SER205 VAL206 LYS207 GLU208 ILE209 SER210 GLY211 LEU212 PRO213 LYS214 ARG215 VAL216 LEU217 GLU218 ASN219 GLU220 PRO221 ILE222 TYR223 GLU224 GLY225 PHE226 THR227 TYR228 ARG229 GLU230 ILE231 VAL232 GLU233 ASP234 ILE235 TYR236 LYS237 ILE238 LEU239 LEU240 GLU241 ILE242 LYS243 LYS244 LEU245 GLY246 ARG247 LEU248 PRO249 VAL250 VAL251 ASN252 PHE253 ALA254 ALA255 GLY256 GLY257 VAL258 ALA259 THR260 PRO261 ALA262 ASP263 ALA264 ALA265 LEU266 MET267 MET268 ALA269 MET270 GLY271 MET272 ASP273 GLY274 VAL275 PHE276 VAL277 GLY278 SER279 GLY280 ILE281 PHE282 LYS283 SER284 SER285 ASN286 PRO287 PRO288 LYS289 MET290 ALA291 ARG292 ALA293 ILE294 VAL295 GLU296 ALA297 VAL298 ASN299 HIS300 TRP301 ASP302 GLU303 PRO304 ASP305 VAL306 LEU307 ALA308 GLU309 ILE310 SER311 ARG312 GLU313 ILE314 GLY315 GLU316 PRO317 MET318 ARG319 GLY320 GLN321 ALA322
Unit 3 ASP2 LYS3 LEU4 LYS5 ILE6 ILE7 MET8 GLU9 LYS10 GLY11 THR12 GLU13 ARG14 LEU15 LYS16 ARG17 GLY18 PHE19 ALA20 LYS21 MET22 VAL23 LYS24 GLY25 GLY26 VAL27 ILE28 MET29 ASP30 VAL31 THR32 ASN33 ALA34 GLU35 GLN36 ALA37 ARG38 ILE39 ALA40 GLU41 GLU42 ALA43 GLY44 ALA45 VAL46 ALA47 VAL48 MET49 ALA50 LEU51 HIS52 LYS53 VAL54 PRO55 ALA56 ASP57 ILE58 ARG59 LYS60 ALA61 GLY62 GLY63 VAL64 ALA65 ARG66 MET67 ALA68 PRO69 VAL70 GLU71 LYS72 ILE73 GLN74 GLU75 ILE76 MET77 ASP78 ALA79 VAL80 THR81 ILE82 PRO83 VAL84 MET85 ALA86 LYS87 CYS88 ARG89 ILE90 GLY91 HIS92 GLU93 ALA94 GLU95 ALA96 ARG97 ILE98 LEU99 GLU100 ALA101 LEU102 GLY103 VAL104 ASP105 MET106 ILE107 ASP108 GLU109 SER110 GLU111 VAL112 LEU113 THR114 PRO115 ALA116 ASP117 PRO118 PHE119 PHE120 HIS121 ILE122 TYR123 LYS124 LYS125 LYS126 PHE127 THR128 ALA129 PRO130 PHE131 VAL132 CYS133 GLY134 ALA135 ARG136 ASN137 LEU138 GLY139 GLU140 ALA141 VAL142 ARG143 ARG144 ILE145 TRP146 GLU147 GLY148 ALA149 ALA150 MET151 ILE152 ARG153 THR154 LYS155 GLY156 GLU157 ALA158 GLY159 THR160 GLY161 ASN162 ILE163 ILE164 GLU165 ALA166 VAL167 ARG168 HIS169 VAL170 ARG171 LEU172 VAL173 ASN174 GLU175 ASN176 ILE177 ARG178 LEU179 ILE180 GLN181 ARG182 MET183 THR184 ASP185 GLU186 GLU187 ILE188 TYR189 GLY190 VAL191 ALA192 GLU193 LYS194 PHE195 ALA196 GLU197 PRO198 TYR199 LEU200 ARG201 LEU202 ALA203 PHE204 SER205 VAL206 LYS207 GLU208 ILE209 SER210 GLY211 LEU212 PRO213 LYS214 ARG215 VAL216 LEU217 GLU218 ASN219 GLU220 PRO221 ILE222 TYR223 GLU224 GLY225 PHE226 THR227 TYR228 ARG229 GLU230 ILE231 VAL232 GLU233 ASP234 ILE235 TYR236 LYS237 ILE238 LEU239 LEU240 GLU241 ILE242 LYS243 LYS244 LEU245 GLY246 ARG247 LEU248 PRO249 VAL250 VAL251 ASN252 PHE253 ALA254 ALA255 GLY256 GLY257 VAL258 ALA259 THR260 PRO261 ALA262 ASP263 ALA264 ALA265 LEU266 MET267 MET268 ALA269 MET270 GLY271 MET272 ASP273 GLY274 VAL275 PHE276 VAL277 GLY278 SER279 GLY280 ILE281 PHE282 LYS283 SER284 SER285 ASN286 PRO287 PRO288 LYS289 MET290 ALA291 ARG292 ALA293 ILE294 VAL295 GLU296 ALA297 VAL298 ASN299 HIS300 TRP301 ASP302 GLU303 PRO304 ASP305 VAL306 LEU307 ALA308 GLU309 ILE310 SER311 ARG312 GLU313 ILE314 GLY315 GLU316 PRO317 MET318 ARG319 GLY320 GLN321 ALA322
Unit 4 ASP2 LYS3 LEU4 LYS5 ILE6 ILE7 MET8 GLU9 LYS10 GLY11 THR12 GLU13 ARG14 LEU15 LYS16 ARG17 GLY18 PHE19 ALA20 LYS21 MET22 VAL23 LYS24 GLY25 GLY26 VAL27 ILE28 MET29 ASP30 VAL31 THR32 ASN33 ALA34 GLU35 GLN36 ALA37 ARG38 ILE39 ALA40 GLU41 GLU42 ALA43 GLY44 ALA45 VAL46 ALA47 VAL48 MET49 ALA50 LEU51 HIS52 LYS53 VAL54 PRO55 ALA56 ASP57 ILE58 ARG59 LYS60 ALA61 GLY62 GLY63 VAL64 ALA65 ARG66 MET67 ALA68 PRO69 VAL70 GLU71 LYS72 ILE73 GLN74 GLU75 ILE76 MET77 ASP78 ALA79 VAL80 THR81 ILE82 PRO83 VAL84 MET85 ALA86 LYS87 CYS88 ARG89 ILE90 GLY91 HIS92 GLU93 ALA94 GLU95 ALA96 ARG97 ILE98 LEU99 GLU100 ALA101 LEU102 GLY103 VAL104 ASP105 MET106 ILE107 ASP108 GLU109 SER110 GLU111 VAL112 LEU113 THR114 PRO115 ALA116 ASP117 PRO118 PHE119 PHE120 HIS121 ILE122 TYR123 LYS124 LYS125 LYS126 PHE127 THR128 ALA129 PRO130 PHE131 VAL132 CYS133 GLY134 ALA135 ARG136 ASN137 LEU138 GLY139 GLU140 ALA141 VAL142 ARG143 ARG144 ILE145 TRP146 GLU147 GLY148 ALA149 ALA150 MET151 ILE152 ARG153 THR154 LYS155 GLY156 GLU157 ALA158 GLY159 THR160 GLY161 ASN162 ILE163 ILE164 GLU165 ALA166 VAL167 ARG168 HIS169 VAL170 ARG171 LEU172 VAL173 ASN174 GLU175 ASN176 ILE177 ARG178 LEU179 ILE180 GLN181 ARG182 MET183 THR184 ASP185 GLU186 GLU187 ILE188 TYR189 GLY190 VAL191 ALA192 GLU193 LYS194 PHE195 ALA196 GLU197 PRO198 TYR199 LEU200 ARG201 LEU202 ALA203 PHE204 SER205 VAL206 LYS207 GLU208 ILE209 SER210 GLY211 LEU212 PRO213 LYS214 ARG215 VAL216 LEU217 GLU218 ASN219 GLU220 PRO221 ILE222 TYR223 GLU224 GLY225 PHE226 THR227 TYR228 ARG229 GLU230 ILE231 VAL232 GLU233 ASP234 ILE235 TYR236 LYS237 ILE238 LEU239 LEU240 GLU241 ILE242 LYS243 LYS244 LEU245 GLY246 ARG247 LEU248 PRO249 VAL250 VAL251 ASN252 PHE253 ALA254 ALA255 GLY256 GLY257 VAL258 ALA259 THR260 PRO261 ALA262 ASP263 ALA264 ALA265 LEU266 MET267 MET268 ALA269 MET270 GLY271 MET272 ASP273 GLY274 VAL275 PHE276 VAL277 GLY278 SER279 GLY280 ILE281 PHE282 LYS283 SER284 SER285 ASN286 PRO287 PRO288 LYS289 MET290 ALA291 ARG292 ALA293 ILE294 VAL295 GLU296 ALA297 VAL298 ASN299 HIS300 TRP301 ASP302 GLU303 PRO304 ASP305 VAL306 LEU307 ALA308 GLU309 ILE310 SER311 ARG312 GLU313 ILE314 GLY315 GLU316 PRO317 MET318 ARG319 GLY320 GLN321 ALA322
Unit 5 ASP2 LYS3 LEU4 LYS5 ILE6 ILE7 MET8 GLU9 LYS10 GLY11 THR12 GLU13 ARG14 LEU15 LYS16 ARG17 GLY18 PHE19 ALA20 LYS21 MET22 VAL23 LYS24 GLY25 GLY26 VAL27 ILE28 MET29 ASP30 VAL31 THR32 ASN33 ALA34 GLU35 GLN36 ALA37 ARG38 ILE39 ALA40 GLU41 GLU42 ALA43 GLY44 ALA45 VAL46 ALA47 VAL48 MET49 ALA50 LEU51 HIS52 LYS53 VAL54 PRO55 ALA56 ASP57 ILE58 ARG59 LYS60 ALA61 GLY62 GLY63 VAL64 ALA65 ARG66 MET67 ALA68 PRO69 VAL70 GLU71 LYS72 ILE73 GLN74 GLU75 ILE76 MET77 ASP78 ALA79 VAL80 THR81 ILE82 PRO83 VAL84 MET85 ALA86 LYS87 CYS88 ARG89 ILE90 GLY91 HIS92 GLU93 ALA94 GLU95 ALA96 ARG97 ILE98 LEU99 GLU100 ALA101 LEU102 GLY103 VAL104 ASP105 MET106 ILE107 ASP108 GLU109 SER110 GLU111 VAL112 LEU113 THR114 PRO115 ALA116 ASP117 PRO118 PHE119 PHE120 HIS121 ILE122 TYR123 LYS124 LYS125 LYS126 PHE127 THR128 ALA129 PRO130 PHE131 VAL132 CYS133 GLY134 ALA135 ARG136 ASN137 LEU138 GLY139 GLU140 ALA141 VAL142 ARG143 ARG144 ILE145 TRP146 GLU147 GLY148 ALA149 ALA150 MET151 ILE152 ARG153 THR154 LYS155 GLY156 GLU157 ALA158 GLY159 THR160 GLY161 ASN162 ILE163 ILE164 GLU165 ALA166 VAL167 ARG168 HIS169 VAL170 ARG171 LEU172 VAL173 ASN174 GLU175 ASN176 ILE177 ARG178 LEU179 ILE180 GLN181 ARG182 MET183 THR184 ASP185 GLU186 GLU187 ILE188 TYR189 GLY190 VAL191 ALA192 GLU193 LYS194 PHE195 ALA196 GLU197 PRO198 TYR199 LEU200 ARG201 LEU202 ALA203 PHE204 SER205 VAL206 LYS207 GLU208 ILE209 SER210 GLY211 LEU212 PRO213 LYS214 ARG215 VAL216 LEU217 GLU218 ASN219 GLU220 PRO221 ILE222 TYR223 GLU224 GLY225 PHE226 THR227 TYR228 ARG229 GLU230 ILE231 VAL232 GLU233 ASP234 ILE235 TYR236 LYS237 ILE238 LEU239 LEU240 GLU241 ILE242 LYS243 LYS244 LEU245 GLY246 ARG247 LEU248 PRO249 VAL250 VAL251 ASN252 PHE253 ALA254 ALA255 GLY256 GLY257 VAL258 ALA259 THR260 PRO261 ALA262 ASP263 ALA264 ALA265 LEU266 MET267 MET268 ALA269 MET270 GLY271 MET272 ASP273 GLY274 VAL275 PHE276 VAL277 GLY278 SER279 GLY280 ILE281 PHE282 LYS283 SER284 SER285 ASN286 PRO287 PRO288 LYS289 MET290 ALA291 ARG292 ALA293 ILE294 VAL295 GLU296 ALA297 VAL298 ASN299 HIS300 TRP301 ASP302 GLU303 PRO304 ASP305 VAL306 LEU307 ALA308 GLU309 ILE310 SER311 ARG312 GLU313 ILE314 GLY315 GLU316 PRO317 MET318 ARG319 GLY320 GLN321 ALA322
Unit 6 ASP2 LYS3 LEU4 LYS5 ILE6 ILE7 MET8 GLU9 LYS10 GLY11 THR12 GLU13 ARG14 LEU15 LYS16 ARG17 GLY18 PHE19 ALA20 LYS21 MET22 VAL23 LYS24 GLY25 GLY26 VAL27 ILE28 MET29 ASP30 VAL31 THR32 ASN33 ALA34 GLU35 GLN36 ALA37 ARG38 ILE39 ALA40 GLU41 GLU42 ALA43 GLY44 ALA45 VAL46 ALA47 VAL48 MET49 ALA50 LEU51 HIS52 LYS53 VAL54 PRO55 ALA56 ASP57 ILE58 ARG59 LYS60 ALA61 GLY62 GLY63 VAL64 ALA65 ARG66 MET67 ALA68 PRO69 VAL70 GLU71 LYS72 ILE73 GLN74 GLU75 ILE76 MET77 ASP78 ALA79 VAL80 THR81 ILE82 PRO83 VAL84 MET85 ALA86 LYS87 CYS88 ARG89 ILE90 GLY91 HIS92 GLU93 ALA94 GLU95 ALA96 ARG97 ILE98 LEU99 GLU100 ALA101 LEU102 GLY103 VAL104 ASP105 MET106 ILE107 ASP108 GLU109 SER110 GLU111 VAL112 LEU113 THR114 PRO115 ALA116 ASP117 PRO118 PHE119 PHE120 HIS121 ILE122 TYR123 LYS124 LYS125 LYS126 PHE127 THR128 ALA129 PRO130 PHE131 VAL132 CYS133 GLY134 ALA135 ARG136 ASN137 LEU138 GLY139 GLU140 ALA141 VAL142 ARG143 ARG144 ILE145 TRP146 GLU147 GLY148 ALA149 ALA150 MET151 ILE152 ARG153 THR154 LYS155 GLY156 GLU157 ALA158 GLY159 THR160 GLY161 ASN162 ILE163 ILE164 GLU165 ALA166 VAL167 ARG168 HIS169 VAL170 ARG171 LEU172 VAL173 ASN174 GLU175 ASN176 ILE177 ARG178 LEU179 ILE180 GLN181 ARG182 MET183 THR184 ASP185 GLU186 GLU187 ILE188 TYR189 GLY190 VAL191 ALA192 GLU193 LYS194 PHE195 ALA196 GLU197 PRO198 TYR199 LEU200 ARG201 LEU202 ALA203 PHE204 SER205 VAL206 LYS207 GLU208 ILE209 SER210 GLY211 LEU212 PRO213 LYS214 ARG215 VAL216 LEU217 GLU218 ASN219 GLU220 PRO221 ILE222 TYR223 GLU224 GLY225 PHE226 THR227 TYR228 ARG229 GLU230 ILE231 VAL232 GLU233 ASP234 ILE235 TYR236 LYS237 ILE238 LEU239 LEU240 GLU241 ILE242 LYS243 LYS244 LEU245 GLY246 ARG247 LEU248 PRO249 VAL250 VAL251 ASN252 PHE253 ALA254 ALA255 GLY256 GLY257 VAL258 ALA259 THR260 PRO261 ALA262 ASP263 ALA264 ALA265 LEU266 MET267 MET268 ALA269 MET270 GLY271 MET272 ASP273 GLY274 VAL275 PHE276 VAL277 GLY278 SER279 GLY280 ILE281 PHE282 LYS283 SER284 SER285 ASN286 PRO287 PRO288 LYS289 MET290 ALA291 ARG292 ALA293 ILE294 VAL295 GLU296 ALA297 VAL298 ASN299 HIS300 TRP301 ASP302 GLU303 PRO304 ASP305 VAL306 LEU307 ALA308 GLU309 ILE310 SER311 ARG312 GLU313 ILE314 GLY315 GLU316 PRO317 MET318 ARG319 GLY320 GLN321 ALA322
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany