4FD3 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF APO-FORMED YMTOAR1
• Keywords: SHORT-CHAIN ALCOHOL DEHYDROGENASE (SDR) FAMILY, FATTY ACID BIOSYNTHESIS, NADPH, COFACTOR, MITOCHONDRION, OXIDOREDUCTAS
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4FD3	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE	A	254	1865	0
2	Protein	3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE	B	253	1903	0
3	Protein	3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE	C	250	1878	0
4	Protein	3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE	D	268	1961	0
5	Protein	3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE	E	250	1837	0
6	Protein	3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE	F	246	1820	0
7	Water			64	0	64
total				1585	11264	64

Proteins

Unit 1	MET 1 HIS 2 TYR 3 LEU 4 PRO 5 VAL 6 ALA 7 ILE 8 VAL 9 THR 10 GLY 11 ALA 12 THR 13 ARG 14 GLY 15 ILE 16 GLY 17 LYS 18 ALA 19 ILE 20 CYS 21 GLN 22 LYS 23 LEU 24 PHE 25 GLN 26 LYS 27 GLY 28 LEU 29 SER 30 CYS 31 ILE 32 ILE 33 LEU 34 GLY 35 SER 36 THR 37 LYS 38 GLU 39 SER 40 ILE 41 GLU 42 ARG 43 THR 44 ALA 45 ILE 46 ASP 47 ARG 48 GLY 49 GLN 50 LEU 51 GLN 52 SER 53 GLY 54 LEU 55 SER 56 TYR 57 GLN 58 ARG 59 GLN 60 CYS 61 ALA 62 ILE 63 ALA 64 ILE 65 ASP 66 PHE 67 LYS 68 LYS 69 TRP 70 PRO 71 HIS 72 TRP 73 LEU 74 ASP 75 TYR 76 GLU 77 SER 78 TYR 79 ASP 80 GLY 81 ILE 82 GLU 83 TYR 84 PHE 85 LYS 86 ASP 87 ARG 88 PRO 89 PRO 90 LEU 91 LYS 92 GLN 93 LYS 94 TYR 95 SER 96 THR 97 LEU 98 PHE 99 ASP 100 PRO 101 CYS 102 ASN 103 LYS 104 TRP 105 SER 106 ASN 107 ASN 108 GLU 109 ARG 110 ARG 111 TYR 112 TYR 113 VAL 114 ASN 115 LEU 116 LEU 117 ILE 118 ASN 119 CYS 120 ALA 121 GLY 122 LEU 123 THR 124 GLN 125 GLU 126 SER 127 LEU 128 SER 129 VAL 130 ARG 131 THR 132 THR 133 ALA 134 SER 135 GLN 136 ILE 137 GLN 138 ASP 139 ILE 140 MET 141 ASN 142 VAL 143 ASN 144 PHE 145 MET 146 SER 147 PRO 148 VAL 149 THR 150 MET 151 THR 152 ASN 153 ILE 154 CYS 155 ILE 156 LYS 157 TYR 158 MET 159 MET 160 LYS 161 SER 162 GLN 163 ARG 164 ARG 165 TRP 166 PRO 167 GLU 168 LEU 169 SER 170 GLY 171 GLN 172 SER 173 ALA 174 ARG 175 PRO 176 THR 177 ILE 178 VAL 179 ASN 180 ILE 181 SER 182 SER 183 ILE 184 LEU 185 HIS 186 SER 187 GLY 188 LYS 189 MET 190 LYS 191 VAL 192 PRO 193 GLY 194 THR 195 SER 196 VAL 197 TYR 198 SER 199 ALA 200 SER 201 LYS 202 ALA 203 ALA 204 LEU 205 SER 206 ARG 207 PHE 208 THR 209 GLU 210 VAL 211 LEU 212 ALA 213 ALA 214 GLU 215 MET 216 GLU 217 PRO 218 ARG 219 ASN 220 ILE 221 ARG 222 CYS 223 PHE 224 THR 225 ILE 226 SER 227 PRO 228 GLY 229 LEU 230 VAL 231 LYS 232 GLY 233 THR 234 ASP 235 SER 255 GLY 256 THR 257 SER 258 ALA 259 PRO 260 ALA 261 GLU 262 ILE 263 ALA 264 GLU 265 GLU 266 VAL 267 TRP 268 SER 269 LEU 270 TYR 271 SER 272 ARG 273
Unit 2	MET 1 HIS 2 TYR 3 LEU 4 PRO 5 VAL 6 ALA 7 ILE 8 VAL 9 THR 10 GLY 11 ALA 12 THR 13 ARG 14 GLY 15 ILE 16 GLY 17 LYS 18 ALA 19 ILE 20 CYS 21 GLN 22 LYS 23 LEU 24 PHE 25 GLN 26 LYS 27 GLY 28 LEU 29 SER 30 CYS 31 ILE 32 ILE 33 LEU 34 GLY 35 SER 36 THR 37 LYS 38 GLU 39 SER 40 ILE 41 GLU 42 ARG 43 THR 44 ALA 45 ILE 46 ASP 47 ARG 48 GLY 49 GLN 50 LEU 51 GLN 52 SER 53 GLY 54 LEU 55 SER 56 TYR 57 GLN 58 ARG 59 GLN 60 CYS 61 ALA 62 ILE 63 ALA 64 ILE 65 ASP 66 PHE 67 LYS 68 LYS 69 TRP 70 PRO 71 HIS 72 TRP 73 LEU 74 ASP 75 TYR 76 GLU 77 SER 78 TYR 79 ASP 80 GLY 81 ILE 82 GLU 83 TYR 84 PHE 85 LYS 86 ASP 87 ARG 88 PRO 89 PRO 90 LEU 91 LYS 92 GLN 93 LYS 94 TYR 95 SER 96 THR 97 LEU 98 PHE 99 ASP 100 PRO 101 CYS 102 ASN 103 LYS 104 TRP 105 SER 106 ASN 107 ASN 108 GLU 109 ARG 110 ARG 111 TYR 112 TYR 113 VAL 114 ASN 115 LEU 116 LEU 117 ILE 118 ASN 119 CYS 120 ALA 121 GLY 122 LEU 123 THR 124 GLN 125 GLU 126 SER 127 LEU 128 SER 129 VAL 130 ARG 131 THR 132 THR 133 ALA 134 SER 135 GLN 136 ILE 137 GLN 138 ASP 139 ILE 140 MET 141 ASN 142 VAL 143 ASN 144 PHE 145 MET 146 SER 147 PRO 148 VAL 149 THR 150 MET 151 THR 152 ASN 153 ILE 154 CYS 155 ILE 156 LYS 157 TYR 158 MET 159 MET 160 LYS 161 SER 162 GLN 163 ARG 164 ARG 165 TRP 166 PRO 167 GLU 168 LEU 169 SER 170 GLY 171 GLN 172 SER 173 ALA 174 ARG 175 PRO 176 THR 177 ILE 178 VAL 179 ASN 180 ILE 181 SER 182 SER 183 ILE 184 LEU 185 HIS 186 SER 187 GLY 188 LYS 189 MET 190 LYS 191 VAL 192 PRO 193 GLY 194 THR 195 SER 196 VAL 197 TYR 198 SER 199 ALA 200 SER 201 LYS 202 ALA 203 ALA 204 LEU 205 SER 206 ARG 207 PHE 208 THR 209 GLU 210 VAL 211 LEU 212 ALA 213 ALA 214 GLU 215 MET 216 GLU 217 PRO 218 ARG 219 ASN 220 ILE 221 ARG 222 CYS 223 PHE 224 THR 225 ILE 226 SER 227 PRO 228 GLY 229 LEU 230 VAL 231 LYS 232 GLY 233 SER 255 GLY 256 THR 257 SER 258 ALA 259 PRO 260 ALA 261 GLU 262 ILE 263 ALA 264 GLU 265 GLU 266 VAL 267 TRP 268 SER 269 LEU 270 TYR 271 SER 272 ARG 273 THR 274
Unit 3	MET 1 HIS 2 TYR 3 LEU 4 PRO 5 VAL 6 ALA 7 ILE 8 VAL 9 THR 10 GLY 11 ALA 12 THR 13 ARG 14 GLY 15 ILE 16 GLY 17 LYS 18 ALA 19 ILE 20 CYS 21 GLN 22 LYS 23 LEU 24 PHE 25 GLN 26 LYS 27 GLY 28 LEU 29 SER 30 CYS 31 ILE 32 ILE 33 LEU 34 GLY 35 SER 36 THR 37 LYS 38 GLU 39 SER 40 ILE 41 GLU 42 ARG 43 THR 44 ALA 45 ILE 46 ASP 47 ARG 48 GLY 49 GLN 50 LEU 51 GLN 52 SER 53 GLY 54 LEU 55 SER 56 TYR 57 GLN 58 ARG 59 GLN 60 CYS 61 ALA 62 ILE 63 ALA 64 ILE 65 ASP 66 PHE 67 LYS 68 LYS 69 TRP 70 PRO 71 HIS 72 TRP 73 LEU 74 ASP 75 TYR 76 GLU 77 SER 78 TYR 79 ASP 80 GLY 81 ILE 82 GLU 83 TYR 84 PHE 85 LYS 86 ASP 87 ARG 88 PRO 89 PRO 90 LEU 91 LYS 92 GLN 93 LYS 94 TYR 95 SER 96 THR 97 LEU 98 PHE 99 ASP 100 PRO 101 CYS 102 ASN 103 LYS 104 TRP 105 SER 106 ASN 107 ASN 108 GLU 109 ARG 110 ARG 111 TYR 112 TYR 113 VAL 114 ASN 115 LEU 116 LEU 117 ILE 118 ASN 119 CYS 120 ALA 121 GLY 122 LEU 123 THR 124 GLN 125 GLU 126 SER 127 LEU 128 SER 129 VAL 130 ARG 131 THR 132 THR 133 ALA 134 SER 135 GLN 136 ILE 137 GLN 138 ASP 139 ILE 140 MET 141 ASN 142 VAL 143 ASN 144 PHE 145 MET 146 SER 147 PRO 148 VAL 149 THR 150 MET 151 THR 152 ASN 153 ILE 154 CYS 155 ILE 156 LYS 157 TYR 158 MET 159 MET 160 LYS 161 SER 162 GLN 163 ARG 164 ARG 165 TRP 166 PRO 167 GLU 168 LEU 169 SER 170 GLY 171 GLN 172 ALA 174 ARG 175 PRO 176 THR 177 ILE 178 VAL 179 ASN 180 ILE 181 SER 182 SER 183 ILE 184 LEU 185 HIS 186 SER 187 GLY 188 LYS 189 MET 190 LYS 191 VAL 192 PRO 193 GLY 194 THR 195 SER 196 VAL 197 TYR 198 SER 199 ALA 200 SER 201 LYS 202 ALA 203 ALA 204 LEU 205 SER 206 ARG 207 PHE 208 THR 209 GLU 210 VAL 211 LEU 212 ALA 213 ALA 214 GLU 215 MET 216 GLU 217 PRO 218 ARG 219 ASN 220 ILE 221 ARG 222 CYS 223 PHE 224 THR 225 ILE 226 SER 227 PRO 228 GLY 229 LEU 230 VAL 231 SER 255 GLY 256 THR 257 SER 258 ALA 259 PRO 260 ALA 261 GLU 262 ILE 263 ALA 264 GLU 265 GLU 266 VAL 267 TRP 268 SER 269 LEU 270 TYR 271 SER 272 ARG 273 THR 274
Unit 4	MET 1 HIS 2 TYR 3 LEU 4 PRO 5 VAL 6 ALA 7 ILE 8 VAL 9 THR 10 GLY 11 ALA 12 THR 13 ARG 14 GLY 15 ILE 16 GLY 17 LYS 18 ALA 19 ILE 20 CYS 21 GLN 22 LYS 23 LEU 24 PHE 25 GLN 26 LYS 27 GLY 28 LEU 29 SER 30 CYS 31 ILE 32 ILE 33 LEU 34 GLY 35 SER 36 THR 37 LYS 38 GLU 39 SER 40 ILE 41 GLU 42 ARG 43 THR 44 ALA 45 ILE 46 ASP 47 ARG 48 GLY 49 GLN 50 LEU 51 GLN 52 SER 53 GLY 54 LEU 55 SER 56 TYR 57 GLN 58 ARG 59 GLN 60 CYS 61 ALA 62 ILE 63 ALA 64 ILE 65 ASP 66 PHE 67 LYS 68 LYS 69 TRP 70 PRO 71 HIS 72 TRP 73 LEU 74 ASP 75 TYR 76 GLU 77 SER 78 TYR 79 ASP 80 GLY 81 ILE 82 GLU 83 TYR 84 PHE 85 LYS 86 ASP 87 ARG 88 PRO 89 PRO 90 LEU 91 LYS 92 GLN 93 LYS 94 TYR 95 SER 96 THR 97 LEU 98 PHE 99 ASP 100 PRO 101 CYS 102 ASN 103 LYS 104 TRP 105 SER 106 ASN 107 ASN 108 GLU 109 ARG 110 ARG 111 TYR 112 TYR 113 VAL 114 ASN 115 LEU 116 LEU 117 ILE 118 ASN 119 CYS 120 ALA 121 GLY 122 LEU 123 THR 124 GLN 125 GLU 126 SER 127 LEU 128 SER 129 VAL 130 ARG 131 THR 132 THR 133 ALA 134 SER 135 GLN 136 ILE 137 GLN 138 ASP 139 ILE 140 MET 141 ASN 142 VAL 143 ASN 144 PHE 145 MET 146 SER 147 PRO 148 VAL 149 THR 150 MET 151 THR 152 ASN 153 ILE 154 CYS 155 ILE 156 LYS 157 TYR 158 MET 159 MET 160 LYS 161 SER 162 GLN 163 ARG 164 ARG 165 TRP 166 PRO 167 GLU 168 LEU 169 SER 170 GLY 171 GLN 172 ALA 174 ARG 175 PRO 176 THR 177 ILE 178 VAL 179 ASN 180 ILE 181 SER 182 SER 183 ILE 184 LEU 185 HIS 186 SER 187 GLY 188 LYS 189 MET 190 LYS 191 VAL 192 PRO 193 GLY 194 THR 195 SER 196 VAL 197 TYR 198 SER 199 ALA 200 SER 201 LYS 202 ALA 203 ALA 204 LEU 205 SER 206 ARG 207 PHE 208 THR 209 GLU 210 VAL 211 LEU 212 ALA 213 ALA 214 GLU 215 MET 216 GLU 217 PRO 218 ARG 219 ASN 220 ILE 221 ARG 222 CYS 223 PHE 224 THR 225 ILE 226 SER 227 PRO 228 GLY 229 LEU 230 VAL 231 LYS 232 GLY 233 THR 234 ASP 235 PRO 241 VAL 242 GLU 243 ALA 244 LYS 245 GLU 246 MET 247 LEU 248 GLU 249 ARG 250 THR 251 ILE 252 GLY 253 ALA 254 SER 255 GLY 256 THR 257 SER 258 ALA 259 PRO 260 ALA 261 GLU 262 ILE 263 ALA 264 GLU 265 GLU 266 VAL 267 TRP 268 SER 269 LEU 270 TYR 271 SER 272 ARG 273 THR 274
Unit 5	MET 1 HIS 2 TYR 3 LEU 4 PRO 5 VAL 6 ALA 7 ILE 8 VAL 9 THR 10 GLY 11 ALA 12 THR 13 ARG 14 GLY 15 ILE 16 GLY 17 LYS 18 ALA 19 ILE 20 CYS 21 GLN 22 LYS 23 LEU 24 PHE 25 GLN 26 LYS 27 GLY 28 LEU 29 SER 30 CYS 31 ILE 32 ILE 33 LEU 34 GLY 35 SER 36 THR 37 LYS 38 GLU 39 SER 40 ILE 41 GLU 42 ARG 43 THR 44 ALA 45 ILE 46 ASP 47 ARG 48 GLY 49 GLN 50 LEU 51 GLN 52 SER 53 GLY 54 LEU 55 SER 56 TYR 57 GLN 58 ARG 59 GLN 60 CYS 61 ALA 62 ILE 63 ALA 64 ILE 65 ASP 66 PHE 67 LYS 68 LYS 69 TRP 70 PRO 71 HIS 72 TRP 73 LEU 74 ASP 75 TYR 76 GLU 77 SER 78 TYR 79 ASP 80 GLY 81 ILE 82 GLU 83 TYR 84 PHE 85 LYS 86 ASP 87 ARG 88 PRO 89 PRO 90 LEU 91 LYS 92 GLN 93 LYS 94 TYR 95 SER 96 THR 97 LEU 98 PHE 99 ASP 100 PRO 101 CYS 102 ASN 103 LYS 104 TRP 105 SER 106 ASN 107 ASN 108 GLU 109 ARG 110 ARG 111 TYR 112 TYR 113 VAL 114 ASN 115 LEU 116 LEU 117 ILE 118 ASN 119 CYS 120 ALA 121 GLY 122 LEU 123 THR 124 GLN 125 GLU 126 SER 127 LEU 128 SER 129 VAL 130 ARG 131 THR 132 THR 133 ALA 134 SER 135 GLN 136 ILE 137 GLN 138 ASP 139 ILE 140 MET 141 ASN 142 VAL 143 ASN 144 PHE 145 MET 146 SER 147 PRO 148 VAL 149 THR 150 MET 151 THR 152 ASN 153 ILE 154 CYS 155 ILE 156 LYS 157 TYR 158 MET 159 MET 160 LYS 161 SER 162 GLN 163 ARG 164 ARG 165 TRP 166 PRO 167 GLU 168 LEU 169 SER 170 SER 173 ALA 174 ARG 175 PRO 176 THR 177 ILE 178 VAL 179 ASN 180 ILE 181 SER 182 SER 183 ILE 184 LEU 185 HIS 186 SER 187 GLY 188 LYS 189 MET 190 LYS 191 VAL 192 PRO 193 GLY 194 THR 195 SER 196 VAL 197 TYR 198 SER 199 ALA 200 SER 201 LYS 202 ALA 203 ALA 204 LEU 205 SER 206 ARG 207 PHE 208 THR 209 GLU 210 VAL 211 LEU 212 ALA 213 ALA 214 GLU 215 MET 216 GLU 217 PRO 218 ARG 219 ASN 220 ILE 221 ARG 222 CYS 223 PHE 224 THR 225 ILE 226 SER 227 PRO 228 GLY 229 LEU 230 VAL 231 LYS 232 SER 255 GLY 256 THR 257 SER 258 ALA 259 PRO 260 ALA 261 GLU 262 ILE 263 ALA 264 GLU 265 GLU 266 VAL 267 TRP 268 SER 269 LEU 270 TYR 271 SER 272 ARG 273 THR 274
Unit 6	MET 1 HIS 2 TYR 3 LEU 4 PRO 5 VAL 6 ALA 7 ILE 8 VAL 9 THR 10 GLY 11 ALA 12 THR 13 ARG 14 GLY 15 ILE 16 GLY 17 LYS 18 ALA 19 ILE 20 CYS 21 GLN 22 LYS 23 LEU 24 PHE 25 GLN 26 LYS 27 GLY 28 LEU 29 SER 30 CYS 31 ILE 32 ILE 33 LEU 34 GLY 35 SER 36 THR 37 LYS 38 GLU 39 SER 40 ILE 41 GLU 42 ARG 43 THR 44 ALA 45 ILE 46 ASP 47 ARG 48 GLY 49 GLN 50 LEU 51 GLN 52 SER 53 GLY 54 LEU 55 SER 56 TYR 57 GLN 58 ARG 59 GLN 60 CYS 61 ALA 62 ILE 63 ALA 64 ILE 65 ASP 66 PHE 67 LYS 68 LYS 69 TRP 70 PRO 71 HIS 72 TRP 73 LEU 74 ASP 75 TYR 76 GLU 77 SER 78 TYR 79 ASP 80 GLY 81 ILE 82 GLU 83 TYR 84 PHE 85 LYS 86 ASP 87 ARG 88 PRO 89 PRO 90 LEU 91 LYS 92 GLN 93 LYS 94 TYR 95 SER 96 THR 97 LEU 98 PHE 99 ASP 100 PRO 101 CYS 102 ASN 103 LYS 104 TRP 105 SER 106 ASN 107 ASN 108 GLU 109 ARG 110 ARG 111 TYR 112 TYR 113 VAL 114 ASN 115 LEU 116 LEU 117 ILE 118 ASN 119 CYS 120 ALA 121 GLY 122 LEU 123 THR 124 GLN 125 GLU 126 SER 127 LEU 128 SER 129 VAL 130 ARG 131 THR 132 THR 133 ALA 134 SER 135 GLN 136 ILE 137 GLN 138 ASP 139 ILE 140 MET 141 ASN 142 VAL 143 ASN 144 PHE 145 MET 146 SER 147 PRO 148 VAL 149 THR 150 MET 151 THR 152 ASN 153 ILE 154 CYS 155 ILE 156 LYS 157 TYR 158 MET 159 MET 160 LYS 161 SER 162 GLN 163 ARG 164 ARG 165 TRP 166 PRO 167 GLU 168 LEU 169 SER 170 GLY 171 SER 173 ALA 174 ARG 175 PRO 176 THR 177 ILE 178 VAL 179 ASN 180 ILE 181 SER 182 SER 183 ILE 184 LEU 185 HIS 186 SER 187 GLY 188 LYS 189 MET 190 LYS 191 VAL 192 PRO 193 GLY 194 THR 195 SER 196 VAL 197 TYR 198 SER 199 ALA 200 SER 201 LYS 202 ALA 203 ALA 204 LEU 205 SER 206 ARG 207 PHE 208 THR 209 GLU 210 VAL 211 LEU 212 ALA 213 ALA 214 GLU 215 MET 216 GLU 217 PRO 218 ARG 219 ASN 220 ILE 221 ARG 222 CYS 223 PHE 224 THR 225 ILE 226 SER 227 PRO 228 GLY 229 GLY 256 THR 257 SER 258 ALA 259 PRO 260 ALA 261 GLU 262 ILE 263 ALA 264 GLU 265 GLU 266 VAL 267 TRP 268 SER 269 LEU 270 TYR 271 SER 272 ARG 273