4F4U - Sequence, Chains, Asymmetric and Biological Units

• Title: THE BICYCLIC INTERMEDIATE STRUCTURE PROVIDES INSIGHTS INTO T DESUCCINYLATION MECHANISM OF SIRT5
• Keywords: ZN-BINDING DOMAIN, ROSSMANN FOLD DOMAIN, NAD-DEPENDENT DEMAL AND DESUCCINYLASE, MITOCHONDRIAL SIRTUIN, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4F4U	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	NAD-DEPENDENT LYSINE DEMALONYLASE AND DESUCCINYLA SIRTUIN-5, MITOCHONDRIAL	A	266	2041	0
2	Protein	NAD-DEPENDENT LYSINE DEMALONYLASE AND DESUCCINYLA SIRTUIN-5, MITOCHONDRIAL	B	260	2001	0
3	Protein	PEPTIDE FROM HISTONE H3.1	C	7	40	16
4	Protein	PEPTIDE FROM HISTONE H3.1	D	7	40	16
5	Ligand	NAD-DEPENDENT LYSINE DEMALONYLASE AND DESUCCINYLA SIRTUIN-5, MITOCHONDRIAL	A	1	0	1
6	Ligand	NAD-DEPENDENT LYSINE DEMALONYLASE AND DESUCCINYLA SIRTUIN-5, MITOCHONDRIAL	B	1	0	1
7	Water			238	0	238
total				780	4122	272

Proteins

Unit 1	THR 33 ALA 34 ARG 35 PRO 36 SER 37 SER 38 SER 39 MET 40 ALA 41 ASP 42 PHE 43 ARG 44 LYS 45 PHE 46 PHE 47 ALA 48 LYS 49 ALA 50 LYS 51 HIS 52 ILE 53 VAL 54 ILE 55 ILE 56 SER 57 GLY 58 ALA 59 GLY 60 VAL 61 SER 62 ALA 63 GLU 64 SER 65 GLY 66 VAL 67 PRO 68 THR 69 PHE 70 GLY 75 TYR 76 TRP 77 ARG 78 LYS 79 TRP 80 GLN 81 ALA 82 GLN 83 ASP 84 LEU 85 ALA 86 THR 87 PRO 88 LEU 89 ALA 90 PHE 91 ALA 92 HIS 93 ASN 94 PRO 95 SER 96 ARG 97 VAL 98 TRP 99 GLU 100 PHE 101 TYR 102 HIS 103 TYR 104 ARG 105 ARG 106 GLU 107 VAL 108 MET 109 GLY 110 SER 111 LYS 112 GLU 113 PRO 114 ASN 115 ALA 116 GLY 117 HIS 118 ARG 119 ALA 120 ILE 121 ALA 122 GLU 123 CYS 124 GLU 125 THR 126 ARG 127 LEU 128 GLY 129 LYS 130 GLN 131 GLY 132 ARG 133 ARG 134 VAL 135 VAL 136 VAL 137 ILE 138 THR 139 GLN 140 ASN 141 ILE 142 ASP 143 GLU 144 LEU 145 HIS 146 ARG 147 LYS 148 ALA 149 GLY 150 THR 151 LYS 152 ASN 153 LEU 154 LEU 155 GLU 156 ILE 157 HIS 158 GLY 159 SER 160 LEU 161 PHE 162 LYS 163 THR 164 ARG 165 CYS 166 THR 167 SER 168 CYS 169 GLY 170 VAL 171 VAL 172 ALA 173 GLU 174 ASN 175 TYR 176 LYS 177 SER 178 PRO 179 ILE 180 CYS 181 PRO 182 ALA 183 LEU 184 SER 185 GLY 186 LYS 187 GLY 188 ALA 189 PRO 190 GLU 191 PRO 192 GLY 193 THR 194 GLN 195 ASP 196 ALA 197 SER 198 ILE 199 PRO 200 VAL 201 GLU 202 LYS 203 LEU 204 PRO 205 ARG 206 CYS 207 GLU 208 GLU 209 ALA 210 GLY 211 CYS 212 GLY 213 GLY 214 LEU 215 LEU 216 ARG 217 PRO 218 HIS 219 VAL 220 VAL 221 TRP 222 PHE 223 GLY 224 GLU 225 ASN 226 LEU 227 ASP 228 PRO 229 ALA 230 ILE 231 LEU 232 GLU 233 GLU 234 VAL 235 ASP 236 ARG 237 GLU 238 LEU 239 ALA 240 HIS 241 CYS 242 ASP 243 LEU 244 CYS 245 LEU 246 VAL 247 VAL 248 GLY 249 THR 250 SER 251 SER 252 VAL 253 VAL 254 TYR 255 PRO 256 ALA 257 ALA 258 MET 259 PHE 260 ALA 261 PRO 262 GLN 263 VAL 264 ALA 265 ALA 266 ARG 267 GLY 268 VAL 269 PRO 270 VAL 271 ALA 272 GLU 273 PHE 274 ASN 275 THR 276 GLU 277 THR 278 THR 279 PRO 280 ALA 281 THR 282 ASN 283 ARG 284 PHE 285 ARG 286 PHE 287 HIS 288 PHE 289 GLN 290 GLY 291 PRO 292 CYS 293 GLY 294 THR 295 THR 296 LEU 297 PRO 298 GLU 299 ALA 300 LEU 301 ALA 302
Unit 2	PHE 32 THR 33 ALA 34 ARG 35 PRO 36 SER 37 SER 38 SER 39 MET 40 ALA 41 ASP 42 PHE 43 ARG 44 LYS 45 PHE 46 PHE 47 ALA 48 LYS 49 ALA 50 LYS 51 HIS 52 ILE 53 VAL 54 ILE 55 ILE 56 SER 57 GLY 58 ALA 59 GLY 60 VAL 61 SER 62 ALA 63 GLY 75 TYR 76 TRP 77 ARG 78 LYS 79 TRP 80 GLN 81 ALA 82 GLN 83 ASP 84 LEU 85 ALA 86 THR 87 PRO 88 LEU 89 ALA 90 PHE 91 ALA 92 HIS 93 ASN 94 PRO 95 SER 96 ARG 97 VAL 98 TRP 99 GLU 100 PHE 101 TYR 102 HIS 103 TYR 104 ARG 105 ARG 106 GLU 107 VAL 108 MET 109 GLY 110 SER 111 LYS 112 GLU 113 PRO 114 ASN 115 ALA 116 GLY 117 HIS 118 ARG 119 ALA 120 ILE 121 ALA 122 GLU 123 CYS 124 GLU 125 THR 126 ARG 127 LEU 128 GLY 129 LYS 130 GLN 131 GLY 132 ARG 133 ARG 134 VAL 135 VAL 136 VAL 137 ILE 138 THR 139 GLN 140 ASN 141 ILE 142 ASP 143 GLU 144 LEU 145 HIS 146 ARG 147 LYS 148 ALA 149 GLY 150 THR 151 LYS 152 ASN 153 LEU 154 LEU 155 GLU 156 ILE 157 HIS 158 GLY 159 SER 160 LEU 161 PHE 162 LYS 163 THR 164 ARG 165 CYS 166 THR 167 SER 168 CYS 169 GLY 170 VAL 171 VAL 172 ALA 173 GLU 174 ASN 175 TYR 176 LYS 177 SER 178 PRO 179 ILE 180 CYS 181 PRO 182 ALA 183 LEU 184 SER 185 GLY 186 LYS 187 GLY 188 ALA 189 PRO 190 GLU 191 PRO 192 GLY 193 THR 194 GLN 195 ASP 196 ALA 197 SER 198 ILE 199 PRO 200 VAL 201 GLU 202 LYS 203 LEU 204 PRO 205 ARG 206 CYS 207 GLU 208 GLU 209 ALA 210 GLY 211 CYS 212 GLY 213 GLY 214 LEU 215 LEU 216 ARG 217 PRO 218 HIS 219 VAL 220 VAL 221 TRP 222 PHE 223 GLY 224 GLU 225 ASN 226 LEU 227 ASP 228 PRO 229 ALA 230 ILE 231 LEU 232 GLU 233 GLU 234 VAL 235 ASP 236 ARG 237 GLU 238 LEU 239 ALA 240 HIS 241 CYS 242 ASP 243 LEU 244 CYS 245 LEU 246 VAL 247 VAL 248 GLY 249 THR 250 SER 251 SER 252 VAL 253 VAL 254 TYR 255 PRO 256 ALA 257 ALA 258 MET 259 PHE 260 ALA 261 PRO 262 GLN 263 VAL 264 ALA 265 ALA 266 ARG 267 GLY 268 VAL 269 PRO 270 VAL 271 ALA 272 GLU 273 PHE 274 ASN 275 THR 276 GLU 277 THR 278 THR 279 PRO 280 ALA 281 THR 282 ASN 283 ARG 284 PHE 285 ARG 286 PHE 287 HIS 288 PHE 289 GLN 290 GLY 291 PRO 292 CYS 293 GLY 294 THR 295 THR 296 LEU 297 PRO 298 GLU 299 ALA 300 LEU 301 ALA 302
Unit 3	THR 6 ALA 7 ARG 8 SLL 9 SER 10 THR 11 GLY 12
Unit 4	THR 6 ALA 7 ARG 8 SLL 9 SER 10 THR 11 GLY 12

Ligands

Unit 5	ZN 1001
Unit 6	ZN 401