4F2M - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF A TGEV CORONAVIRUS SPIKE FRAGMENT IN CO THE TGEV NEUTRALIZING MONOCLONAL ANTIBODY 1AF10
• Keywords: BETA-BARREL, IMMUNOGLOBULIN, VIRUS ENTRY, VIRUS NEUTRALIZATI CELLULAR RECEPTOR, AMINOPEPTIDASE N, GLYCOSYLATION, VIRUS M VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4F2M	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	MONOCLONAL ANTIBODY 1AF10, HEAVY CHAIN	A	214	1614	0
2	Protein	MONOCLONAL ANTIBODY 1AF10, LIGHT CHAIN	B	213	1643	0
3	Protein	MONOCLONAL ANTIBODY 1AF10, HEAVY CHAIN	C	220	1655	0
4	Protein	MONOCLONAL ANTIBODY 1AF10, LIGHT CHAIN	D	211	1626	0
5	Protein	SPIKE PROTEIN	E	148	1162	0
6	Protein	SPIKE PROTEIN	F	148	1162	0
7	Ligand		G	2	0	28
8	Ligand		H	2	0	28
9	Ligand		I	2	0	28
10	Ligand		J	2	0	28
11	Ligand	MONOCLONAL ANTIBODY 1AF10, LIGHT CHAIN	B	1	0	4
12	Ligand	MONOCLONAL ANTIBODY 1AF10, LIGHT CHAIN	D	1	0	4
13	Ligand	SPIKE PROTEIN	F	1	0	14
14	Water			1	0	2
total				1166	8862	136

Proteins

Unit 1	GLN 1 VAL 2 GLN 3 LEU 4 GLN 5 GLN 6 SER 7 GLY 8 PRO 9 GLU 10 LEU 11 VAL 12 LYS 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 LYS 19 ILE 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 TYR 27 ALA 28 PHE 29 SER 30 SER 31 SER 32 TRP 33 MET 34 ASN 35 TRP 36 VAL 37 LYS 38 GLN 39 ARG 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 GLY 49 ARG 50 ILE 51 TYR 52 PRO 53 GLY 54 ASP 55 GLY 56 GLU 57 THR 58 ASN 59 TYR 60 SER 61 GLU 62 LYS 63 PHE 64 LYS 65 GLY 66 LYS 67 ALA 68 THR 69 LEU 70 THR 71 ALA 72 ASP 73 LYS 74 SER 75 SER 76 SER 77 THR 78 ALA 79 TYR 80 MET 81 HIS 82 LEU 83 SER 84 SER 85 LEU 86 THR 87 SER 88 VAL 89 ASP 90 SER 91 ALA 92 VAL 93 TYR 94 PHE 95 CYS 96 ALA 97 ARG 98 GLY 99 GLY 100 TYR 101 ARG 102 TYR 103 ASP 104 PRO 105 TYR 106 TYR 107 ALA 108 MET 109 ASP 110 TYR 111 TRP 112 GLY 113 GLN 114 GLY 115 THR 116 SER 117 VAL 118 THR 119 VAL 120 SER 121 SER 122 ALA 123 LYS 124 THR 125 THR 126 ALA 127 PRO 128 SER 129 VAL 130 TYR 131 PRO 132 LEU 133 ALA 134 PRO 135 THR 141 GLY 142 SER 143 SER 144 VAL 145 THR 146 LEU 147 GLY 148 CYS 149 LEU 150 VAL 151 LYS 152 GLY 153 TYR 154 PHE 155 PRO 156 GLU 157 PRO 158 VAL 159 THR 160 LEU 161 THR 162 TRP 163 ASN 164 SER 165 GLY 166 SER 167 LEU 168 SER 169 SER 170 GLY 171 VAL 172 HIS 173 THR 174 PHE 175 PRO 176 ALA 177 VAL 178 LEU 179 GLN 180 SER 181 ASP 182 LEU 183 TYR 184 THR 185 LEU 186 SER 187 SER 188 SER 189 VAL 190 THR 191 VAL 192 THR 193 SER 194 SER 195 THR 196 TRP 197 PRO 198 SER 199 GLN 200 SER 201 ILE 202 THR 203 CYS 204 ASN 205 VAL 206 ALA 207 HIS 208 PRO 209 ALA 210 SER 211 SER 212 THR 213 LYS 214 VAL 215 ASP 216 LYS 217 LYS 218 ILE 219
Unit 2	ASP 1 ILE 2 LEU 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 ILE 10 LEU 11 SER 12 VAL 13 SER 14 PRO 15 GLY 16 GLU 17 ARG 18 VAL 19 SER 20 LEU 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 SER 28 ILE 29 GLY 30 THR 31 SER 32 ILE 33 HIS 34 TRP 35 TYR 36 GLN 37 GLN 38 ARG 39 THR 40 ASN 41 GLY 42 SER 43 PRO 44 ARG 45 PRO 46 LEU 47 ILE 48 LYS 49 TYR 50 ALA 51 SER 52 GLU 53 SER 54 ILE 55 SER 56 GLY 57 ILE 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 ASN 74 ILE 75 ASN 76 SER 77 VAL 78 GLU 79 SER 80 GLU 81 ASP 82 ILE 83 ALA 84 ASP 85 TYR 86 PHE 87 CYS 88 GLN 89 GLN 90 THR 91 ASP 92 SER 93 TRP 94 PRO 95 THR 96 THR 97 PHE 98 GLY 99 ALA 100 GLY 101 THR 102 LYS 103 LEU 104 GLU 105 LEU 106 LYS 107 ARG 108 ALA 109 ASP 110 ALA 111 ALA 112 PRO 113 THR 114 VAL 115 SER 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLN 124 LEU 125 THR 126 SER 127 GLY 128 GLY 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 PHE 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 LYS 142 ASP 143 ILE 144 ASN 145 VAL 146 LYS 147 TRP 148 LYS 149 ILE 150 ASP 151 GLY 152 SER 153 GLU 154 ARG 155 GLN 156 ASN 157 GLY 158 VAL 159 LEU 160 ASN 161 SER 162 TRP 163 THR 164 ASP 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 MET 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 THR 182 LYS 183 ASP 184 GLU 185 TYR 186 GLU 187 ARG 188 HIS 189 ASN 190 SER 191 TYR 192 THR 193 CYS 194 GLU 195 ALA 196 THR 197 HIS 198 LYS 199 THR 200 SER 201 THR 202 SER 203 PRO 204 ILE 205 VAL 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 ASN 212 GLU 213
Unit 3	GLN 1 VAL 2 GLN 3 LEU 4 GLN 5 GLN 6 SER 7 GLY 8 PRO 9 GLU 10 LEU 11 VAL 12 LYS 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 LYS 19 ILE 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 TYR 27 ALA 28 PHE 29 SER 30 SER 31 SER 32 TRP 33 MET 34 ASN 35 TRP 36 VAL 37 LYS 38 GLN 39 ARG 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 GLY 49 ARG 50 ILE 51 TYR 52 PRO 53 GLY 54 ASP 55 GLY 56 GLU 57 THR 58 ASN 59 TYR 60 SER 61 GLU 62 LYS 63 PHE 64 LYS 65 GLY 66 LYS 67 ALA 68 THR 69 LEU 70 THR 71 ALA 72 ASP 73 LYS 74 SER 75 SER 76 SER 77 THR 78 ALA 79 TYR 80 MET 81 HIS 82 LEU 83 SER 84 SER 85 LEU 86 THR 87 SER 88 VAL 89 ASP 90 SER 91 ALA 92 VAL 93 TYR 94 PHE 95 CYS 96 ALA 97 ARG 98 GLY 99 GLY 100 TYR 101 ARG 102 TYR 103 ASP 104 PRO 105 TYR 106 TYR 107 ALA 108 MET 109 ASP 110 TYR 111 TRP 112 GLY 113 GLN 114 GLY 115 THR 116 SER 117 VAL 118 THR 119 VAL 120 SER 121 SER 122 ALA 123 LYS 124 THR 125 THR 126 ALA 127 PRO 128 SER 129 VAL 130 TYR 131 PRO 132 LEU 133 ALA 134 PRO 135 VAL 136 CYS 137 GLY 138 ASP 139 THR 140 THR 141 GLY 142 SER 143 SER 144 VAL 145 THR 146 LEU 147 GLY 148 CYS 149 LEU 150 VAL 151 LYS 152 GLY 153 TYR 154 PHE 155 PRO 156 GLU 157 PRO 158 VAL 159 THR 160 LEU 161 THR 162 TRP 163 ASN 164 SER 165 GLY 166 SER 167 LEU 168 SER 169 SER 170 GLY 171 VAL 172 HIS 173 THR 174 PHE 175 PRO 176 ALA 177 VAL 178 LEU 179 GLN 180 SER 181 ASP 182 LEU 183 TYR 184 THR 185 LEU 186 SER 187 SER 188 SER 189 VAL 190 THR 191 VAL 192 THR 193 SER 194 SER 195 THR 196 TRP 197 PRO 198 SER 199 GLN 200 SER 201 ILE 202 THR 203 CYS 204 ASN 205 VAL 206 ALA 207 HIS 208 PRO 209 ALA 210 SER 211 SER 212 THR 213 LYS 214 VAL 215 ASP 216 LYS 217 LYS 218 ILE 219 GLU 220
Unit 4	ASP 1 ILE 2 LEU 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 ILE 10 LEU 11 SER 12 VAL 13 SER 14 PRO 15 GLY 16 GLU 17 ARG 18 VAL 19 SER 20 LEU 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 SER 28 ILE 29 GLY 30 THR 31 SER 32 ILE 33 HIS 34 TRP 35 TYR 36 GLN 37 GLN 38 ARG 39 THR 40 ASN 41 GLY 42 SER 43 PRO 44 ARG 45 PRO 46 LEU 47 ILE 48 LYS 49 TYR 50 ALA 51 SER 52 GLU 53 SER 54 ILE 55 SER 56 GLY 57 ILE 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 ASN 74 ILE 75 ASN 76 SER 77 VAL 78 GLU 79 SER 80 GLU 81 ASP 82 ILE 83 ALA 84 ASP 85 TYR 86 PHE 87 CYS 88 GLN 89 GLN 90 THR 91 ASP 92 SER 93 TRP 94 PRO 95 THR 96 THR 97 PHE 98 GLY 99 ALA 100 GLY 101 THR 102 LYS 103 LEU 104 GLU 105 LEU 106 LYS 107 ARG 108 ALA 109 ASP 110 ALA 111 ALA 112 PRO 113 THR 114 VAL 115 SER 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLN 124 LEU 125 THR 126 SER 127 GLY 128 GLY 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 PHE 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 LYS 142 ASP 143 ILE 144 ASN 145 VAL 146 LYS 147 TRP 148 LYS 149 ILE 150 ASP 151 GLY 152 SER 153 GLU 154 ARG 155 GLN 156 ASN 157 GLY 158 VAL 159 LEU 160 ASN 161 SER 162 TRP 163 THR 164 ASP 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 MET 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 THR 182 LYS 183 ASP 184 GLU 185 TYR 186 GLU 187 ARG 188 HIS 189 ASN 190 SER 191 TYR 192 THR 193 CYS 194 GLU 195 ALA 196 THR 197 HIS 198 LYS 199 THR 200 SER 201 THR 202 SER 203 PRO 204 ILE 205 VAL 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211
Unit 5	PRO 507 SER 508 PHE 509 TYR 510 THR 511 HIS 512 THR 513 ILE 514 VAL 515 ASN 516 ILE 517 THR 518 ILE 519 ASP 520 LEU 521 GLY 522 MET 523 LYS 524 ARG 525 SER 526 GLY 527 TYR 528 GLY 529 GLN 530 PRO 531 ILE 532 ALA 533 SER 534 THR 535 LEU 536 SER 537 ASN 538 ILE 539 THR 540 LEU 541 PRO 542 MET 543 GLN 544 ASP 545 ASN 546 ASN 547 THR 548 ASP 549 VAL 550 TYR 551 CYS 552 ILE 553 ARG 554 SER 555 ASP 556 GLN 557 PHE 558 SER 559 VAL 560 TYR 561 VAL 562 HIS 563 SER 564 THR 565 CYS 566 LYS 567 SER 568 SER 569 LEU 570 TRP 571 ASP 572 ASN 573 ILE 574 PHE 575 LYS 576 ARG 577 ASN 578 CYS 579 THR 580 ASP 581 VAL 582 LEU 583 ASP 584 ALA 585 THR 586 ALA 587 VAL 588 ILE 589 LYS 590 THR 591 GLY 592 THR 593 CYS 594 PRO 595 PHE 596 SER 597 PHE 598 ASP 599 LYS 600 LEU 601 ASN 602 ASN 603 TYR 604 LEU 605 THR 606 PHE 607 ASN 608 LYS 609 PHE 610 CYS 611 LEU 612 SER 613 LEU 614 SER 615 PRO 616 VAL 617 GLY 618 ALA 619 ASN 620 CYS 621 LYS 622 PHE 623 ASP 624 VAL 625 ALA 626 ALA 627 ARG 628 THR 629 ARG 630 THR 631 ASN 632 GLU 633 GLN 634 VAL 635 VAL 636 ARG 637 SER 638 LEU 639 TYR 640 VAL 641 ILE 642 TYR 643 GLU 644 GLU 645 GLY 646 ASP 647 ASN 648 ILE 649 VAL 650 LEU 651 VAL 652 PRO 653 ARG 654
Unit 6	PRO 507 SER 508 PHE 509 TYR 510 THR 511 HIS 512 THR 513 ILE 514 VAL 515 ASN 516 ILE 517 THR 518 ILE 519 ASP 520 LEU 521 GLY 522 MET 523 LYS 524 ARG 525 SER 526 GLY 527 TYR 528 GLY 529 GLN 530 PRO 531 ILE 532 ALA 533 SER 534 THR 535 LEU 536 SER 537 ASN 538 ILE 539 THR 540 LEU 541 PRO 542 MET 543 GLN 544 ASP 545 ASN 546 ASN 547 THR 548 ASP 549 VAL 550 TYR 551 CYS 552 ILE 553 ARG 554 SER 555 ASP 556 GLN 557 PHE 558 SER 559 VAL 560 TYR 561 VAL 562 HIS 563 SER 564 THR 565 CYS 566 LYS 567 SER 568 SER 569 LEU 570 TRP 571 ASP 572 ASN 573 ILE 574 PHE 575 LYS 576 ARG 577 ASN 578 CYS 579 THR 580 ASP 581 VAL 582 LEU 583 ASP 584 ALA 585 THR 586 ALA 587 VAL 588 ILE 589 LYS 590 THR 591 GLY 592 THR 593 CYS 594 PRO 595 PHE 596 SER 597 PHE 598 ASP 599 LYS 600 LEU 601 ASN 602 ASN 603 TYR 604 LEU 605 THR 606 PHE 607 ASN 608 LYS 609 PHE 610 CYS 611 LEU 612 SER 613 LEU 614 SER 615 PRO 616 VAL 617 GLY 618 ALA 619 ASN 620 CYS 621 LYS 622 PHE 623 ASP 624 VAL 625 ALA 626 ALA 627 ARG 628 THR 629 ARG 630 THR 631 ASN 632 GLU 633 GLN 634 VAL 635 VAL 636 ARG 637 SER 638 LEU 639 TYR 640 VAL 641 ILE 642 TYR 643 GLU 644 GLU 645 GLY 646 ASP 647 ASN 648 ILE 649 VAL 650 LEU 651 VAL 652 PRO 653 ARG 654

Ligands

Unit 7	NAG 1 NAG 2
Unit 8	NAG 1 NAG 2
Unit 9	NAG 1 NAG 2
Unit 10	NAG 1 NAG 2
Unit 11	ACY 301
Unit 12	ACY 301
Unit 13	NAG 705