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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF ESCHERICHIA COLI L-ARABINOSE ISOMERASE COMPLEXED WITH RIBITOL
Keywords STRUCTURAL GENOMICS, PSI-1, PROTEIN STRUCTURE INITIATIVE, NE SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, ISOME SUGAR BINDING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4F2D     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   L-ARABINOSE ISOMERASE  A 498 3728 133
2  Protein   L-ARABINOSE ISOMERASE  B 498 3764 133
3  Protein   L-ARABINOSE ISOMERASE  C 498 3631 133
4  Ligand   L-ARABINOSE ISOMERASE  A 2 0 11
5  Ligand   L-ARABINOSE ISOMERASE  B 3 0 15
6  Ligand   L-ARABINOSE ISOMERASE  C 2 0 11
7 Water     221 0 221
total       1722 11123 657
Proteins
Unit 1 MSE1 THR2 ILE3 PHE4 ASP5 ASN6 TYR7 GLU8 VAL9 TRP10 PHE11 VAL12 ILE13 GLY14 SER15 GLN16 HIS17 LEU18 TYR19 GLY20 PRO21 GLU22 THR23 LEU24 ARG25 GLN26 VAL27 THR28 GLN29 HIS30 ALA31 GLU32 HIS33 VAL34 VAL35 ASN36 ALA37 LEU38 ASN39 THR40 GLU41 ALA42 LYS43 LEU44 PRO45 CYS46 LYS47 LEU48 VAL49 LEU50 LYS51 PRO52 LEU53 GLY54 THR55 THR56 PRO57 ASP58 GLU59 ILE60 THR61 ALA62 ILE63 CYS64 ARG65 ASP66 ALA67 ASN68 TYR69 ASP70 ASP71 ARG72 CYS73 ALA74 GLY75 LEU76 VAL77 VAL78 TRP79 LEU80 HIS81 THR82 PHE83 SER84 PRO85 ALA86 LYS87 MSE88 TRP89 ILE90 ASN91 GLY92 LEU93 THR94 MSE95 LEU96 ASN97 LYS98 PRO99 LEU100 LEU101 GLN102 PHE103 HIS104 THR105 GLN106 PHE107 ASN108 ALA109 ALA110 LEU111 PRO112 TRP113 ASP114 SER115 ILE116 ASP117 MSE118 ASP119 PHE120 MSE121 ASN122 LEU123 ASN124 GLN125 THR126 ALA127 HIS128 GLY129 GLY130 ARG131 GLU132 PHE133 GLY134 PHE135 ILE136 GLY137 ALA138 ARG139 MSE140 ARG141 GLN142 GLN143 HIS144 ALA145 VAL146 VAL147 THR148 GLY149 HIS150 TRP151 GLN152 ASP153 LYS154 GLN155 ALA156 HIS157 GLU158 ARG159 ILE160 GLY161 SER162 TRP163 MSE164 ARG165 GLN166 ALA167 VAL168 SER169 LYS170 GLN171 ASP172 THR173 ARG174 HIS175 LEU176 LYS177 VAL178 CYS179 ARG180 PHE181 GLY182 ASP183 ASN184 MSE185 ARG186 GLU187 VAL188 ALA189 VAL190 THR191 ASP192 GLY193 ASP194 LYS195 VAL196 ALA197 ALA198 GLN199 ILE200 LYS201 PHE202 GLY203 PHE204 SER205 VAL206 ASN207 THR208 TRP209 ALA210 VAL211 GLY212 ASP213 LEU214 VAL215 GLN216 VAL217 VAL218 ASN219 SER220 ILE221 SER222 ASP223 GLY224 ASP225 VAL226 ASN227 ALA228 LEU229 VAL230 ASP231 GLU232 TYR233 GLU234 SER235 CYS236 TYR237 THR238 MSE239 THR240 PRO241 ALA242 THR243 GLN244 ILE245 HIS246 GLY247 GLU248 LYS249 ARG250 GLN251 ASN252 VAL253 LEU254 GLU255 ALA256 ALA257 ARG258 ILE259 GLU260 LEU261 GLY262 MSE263 LYS264 ARG265 PHE266 LEU267 GLU268 GLN269 GLY270 GLY271 PHE272 HIS273 ALA274 PHE275 THR276 THR277 THR278 PHE279 GLU280 ASP281 LEU282 HIS283 GLY284 LEU285 LYS286 GLN287 LEU288 PRO289 GLY290 LEU291 ALA292 VAL293 GLN294 ARG295 LEU296 MSE297 GLN298 GLN299 GLY300 TYR301 GLY302 PHE303 ALA304 GLY305 GLU306 GLY307 ASP308 TRP309 LYS310 THR311 ALA312 ALA313 LEU314 LEU315 ARG316 ILE317 MSE318 LYS319 VAL320 MSE321 SER322 THR323 GLY324 LEU325 GLN326 GLY327 GLY328 THR329 SER330 PHE331 MSE332 GLU333 ASP334 TYR335 THR336 TYR337 HIS338 PHE339 GLU340 LYS341 GLY342 ASN343 ASP344 LEU345 VAL346 LEU347 GLY348 SER349 HIS350 MSE351 LEU352 GLU353 VAL354 CYS355 PRO356 SER357 ILE358 ALA359 VAL360 GLU361 GLU362 LYS363 PRO364 ILE365 LEU366 ASP367 VAL368 GLN369 HIS370 LEU371 GLY372 ILE373 GLY374 GLY375 LYS376 ASP377 ASP378 PRO379 ALA380 ARG381 LEU382 ILE383 PHE384 ASN385 THR386 GLN387 THR388 GLY389 PRO390 ALA391 ILE392 VAL393 ALA394 SER395 LEU396 ILE397 ASP398 LEU399 GLY400 ASP401 ARG402 TYR403 ARG404 LEU405 LEU406 VAL407 ASN408 CYS409 ILE410 ASP411 THR412 VAL413 LYS414 THR415 PRO416 HIS417 SER418 LEU419 PRO420 LYS421 LEU422 PRO423 VAL424 ALA425 ASN426 ALA427 LEU428 TRP429 LYS430 ALA431 GLN432 PRO433 ASP434 LEU435 PRO436 THR437 ALA438 SER439 GLU440 ALA441 TRP442 ILE443 LEU444 ALA445 GLY446 GLY447 ALA448 HIS449 HIS450 THR451 VAL452 PHE453 SER454 HIS455 ALA456 LEU457 ASN458 LEU459 ASN460 ASP461 MSE462 ARG463 GLN464 PHE465 ALA466 GLU467 MSE468 HIS469 ASP470 ILE471 GLU472 ILE473 THR474 VAL475 ILE476 ASP477 ASN478 ASP479 THR480 ARG481 LEU482 PRO483 ALA484 PHE485 LYS486 ASP487 ALA488 LEU489 ARG490 TRP491 ASN492 GLU493 VAL494 TYR495 TYR496 GLY497 PHE498
Unit 2 MSE1 THR2 ILE3 PHE4 ASP5 ASN6 TYR7 GLU8 VAL9 TRP10 PHE11 VAL12 ILE13 GLY14 SER15 GLN16 HIS17 LEU18 TYR19 GLY20 PRO21 GLU22 THR23 LEU24 ARG25 GLN26 VAL27 THR28 GLN29 HIS30 ALA31 GLU32 HIS33 VAL34 VAL35 ASN36 ALA37 LEU38 ASN39 THR40 GLU41 ALA42 LYS43 LEU44 PRO45 CYS46 LYS47 LEU48 VAL49 LEU50 LYS51 PRO52 LEU53 GLY54 THR55 THR56 PRO57 ASP58 GLU59 ILE60 THR61 ALA62 ILE63 CYS64 ARG65 ASP66 ALA67 ASN68 TYR69 ASP70 ASP71 ARG72 CYS73 ALA74 GLY75 LEU76 VAL77 VAL78 TRP79 LEU80 HIS81 THR82 PHE83 SER84 PRO85 ALA86 LYS87 MSE88 TRP89 ILE90 ASN91 GLY92 LEU93 THR94 MSE95 LEU96 ASN97 LYS98 PRO99 LEU100 LEU101 GLN102 PHE103 HIS104 THR105 GLN106 PHE107 ASN108 ALA109 ALA110 LEU111 PRO112 TRP113 ASP114 SER115 ILE116 ASP117 MSE118 ASP119 PHE120 MSE121 ASN122 LEU123 ASN124 GLN125 THR126 ALA127 HIS128 GLY129 GLY130 ARG131 GLU132 PHE133 GLY134 PHE135 ILE136 GLY137 ALA138 ARG139 MSE140 ARG141 GLN142 GLN143 HIS144 ALA145 VAL146 VAL147 THR148 GLY149 HIS150 TRP151 GLN152 ASP153 LYS154 GLN155 ALA156 HIS157 GLU158 ARG159 ILE160 GLY161 SER162 TRP163 MSE164 ARG165 GLN166 ALA167 VAL168 SER169 LYS170 GLN171 ASP172 THR173 ARG174 HIS175 LEU176 LYS177 VAL178 CYS179 ARG180 PHE181 GLY182 ASP183 ASN184 MSE185 ARG186 GLU187 VAL188 ALA189 VAL190 THR191 ASP192 GLY193 ASP194 LYS195 VAL196 ALA197 ALA198 GLN199 ILE200 LYS201 PHE202 GLY203 PHE204 SER205 VAL206 ASN207 THR208 TRP209 ALA210 VAL211 GLY212 ASP213 LEU214 VAL215 GLN216 VAL217 VAL218 ASN219 SER220 ILE221 SER222 ASP223 GLY224 ASP225 VAL226 ASN227 ALA228 LEU229 VAL230 ASP231 GLU232 TYR233 GLU234 SER235 CYS236 TYR237 THR238 MSE239 THR240 PRO241 ALA242 THR243 GLN244 ILE245 HIS246 GLY247 GLU248 LYS249 ARG250 GLN251 ASN252 VAL253 LEU254 GLU255 ALA256 ALA257 ARG258 ILE259 GLU260 LEU261 GLY262 MSE263 LYS264 ARG265 PHE266 LEU267 GLU268 GLN269 GLY270 GLY271 PHE272 HIS273 ALA274 PHE275 THR276 THR277 THR278 PHE279 GLU280 ASP281 LEU282 HIS283 GLY284 LEU285 LYS286 GLN287 LEU288 PRO289 GLY290 LEU291 ALA292 VAL293 GLN294 ARG295 LEU296 MSE297 GLN298 GLN299 GLY300 TYR301 GLY302 PHE303 ALA304 GLY305 GLU306 GLY307 ASP308 TRP309 LYS310 THR311 ALA312 ALA313 LEU314 LEU315 ARG316 ILE317 MSE318 LYS319 VAL320 MSE321 SER322 THR323 GLY324 LEU325 GLN326 GLY327 GLY328 THR329 SER330 PHE331 MSE332 GLU333 ASP334 TYR335 THR336 TYR337 HIS338 PHE339 GLU340 LYS341 GLY342 ASN343 ASP344 LEU345 VAL346 LEU347 GLY348 SER349 HIS350 MSE351 LEU352 GLU353 VAL354 CYS355 PRO356 SER357 ILE358 ALA359 VAL360 GLU361 GLU362 LYS363 PRO364 ILE365 LEU366 ASP367 VAL368 GLN369 HIS370 LEU371 GLY372 ILE373 GLY374 GLY375 LYS376 ASP377 ASP378 PRO379 ALA380 ARG381 LEU382 ILE383 PHE384 ASN385 THR386 GLN387 THR388 GLY389 PRO390 ALA391 ILE392 VAL393 ALA394 SER395 LEU396 ILE397 ASP398 LEU399 GLY400 ASP401 ARG402 TYR403 ARG404 LEU405 LEU406 VAL407 ASN408 CYS409 ILE410 ASP411 THR412 VAL413 LYS414 THR415 PRO416 HIS417 SER418 LEU419 PRO420 LYS421 LEU422 PRO423 VAL424 ALA425 ASN426 ALA427 LEU428 TRP429 LYS430 ALA431 GLN432 PRO433 ASP434 LEU435 PRO436 THR437 ALA438 SER439 GLU440 ALA441 TRP442 ILE443 LEU444 ALA445 GLY446 GLY447 ALA448 HIS449 HIS450 THR451 VAL452 PHE453 SER454 HIS455 ALA456 LEU457 ASN458 LEU459 ASN460 ASP461 MSE462 ARG463 GLN464 PHE465 ALA466 GLU467 MSE468 HIS469 ASP470 ILE471 GLU472 ILE473 THR474 VAL475 ILE476 ASP477 ASN478 ASP479 THR480 ARG481 LEU482 PRO483 ALA484 PHE485 LYS486 ASP487 ALA488 LEU489 ARG490 TRP491 ASN492 GLU493 VAL494 TYR495 TYR496 GLY497 PHE498
Unit 3 MSE1 THR2 ILE3 PHE4 ASP5 ASN6 TYR7 GLU8 VAL9 TRP10 PHE11 VAL12 ILE13 GLY14 SER15 GLN16 HIS17 LEU18 TYR19 GLY20 PRO21 GLU22 THR23 LEU24 ARG25 GLN26 VAL27 THR28 GLN29 HIS30 ALA31 GLU32 HIS33 VAL34 VAL35 ASN36 ALA37 LEU38 ASN39 THR40 GLU41 ALA42 LYS43 LEU44 PRO45 CYS46 LYS47 LEU48 VAL49 LEU50 LYS51 PRO52 LEU53 GLY54 THR55 THR56 PRO57 ASP58 GLU59 ILE60 THR61 ALA62 ILE63 CYS64 ARG65 ASP66 ALA67 ASN68 TYR69 ASP70 ASP71 ARG72 CYS73 ALA74 GLY75 LEU76 VAL77 VAL78 TRP79 LEU80 HIS81 THR82 PHE83 SER84 PRO85 ALA86 LYS87 MSE88 TRP89 ILE90 ASN91 GLY92 LEU93 THR94 MSE95 LEU96 ASN97 LYS98 PRO99 LEU100 LEU101 GLN102 PHE103 HIS104 THR105 GLN106 PHE107 ASN108 ALA109 ALA110 LEU111 PRO112 TRP113 ASP114 SER115 ILE116 ASP117 MSE118 ASP119 PHE120 MSE121 ASN122 LEU123 ASN124 GLN125 THR126 ALA127 HIS128 GLY129 GLY130 ARG131 GLU132 PHE133 GLY134 PHE135 ILE136 GLY137 ALA138 ARG139 MSE140 ARG141 GLN142 GLN143 HIS144 ALA145 VAL146 VAL147 THR148 GLY149 HIS150 TRP151 GLN152 ASP153 LYS154 GLN155 ALA156 HIS157 GLU158 ARG159 ILE160 GLY161 SER162 TRP163 MSE164 ARG165 GLN166 ALA167 VAL168 SER169 LYS170 GLN171 ASP172 THR173 ARG174 HIS175 LEU176 LYS177 VAL178 CYS179 ARG180 PHE181 GLY182 ASP183 ASN184 MSE185 ARG186 GLU187 VAL188 ALA189 VAL190 THR191 ASP192 GLY193 ASP194 LYS195 VAL196 ALA197 ALA198 GLN199 ILE200 LYS201 PHE202 GLY203 PHE204 SER205 VAL206 ASN207 THR208 TRP209 ALA210 VAL211 GLY212 ASP213 LEU214 VAL215 GLN216 VAL217 VAL218 ASN219 SER220 ILE221 SER222 ASP223 GLY224 ASP225 VAL226 ASN227 ALA228 LEU229 VAL230 ASP231 GLU232 TYR233 GLU234 SER235 CYS236 TYR237 THR238 MSE239 THR240 PRO241 ALA242 THR243 GLN244 ILE245 HIS246 GLY247 GLU248 LYS249 ARG250 GLN251 ASN252 VAL253 LEU254 GLU255 ALA256 ALA257 ARG258 ILE259 GLU260 LEU261 GLY262 MSE263 LYS264 ARG265 PHE266 LEU267 GLU268 GLN269 GLY270 GLY271 PHE272 HIS273 ALA274 PHE275 THR276 THR277 THR278 PHE279 GLU280 ASP281 LEU282 HIS283 GLY284 LEU285 LYS286 GLN287 LEU288 PRO289 GLY290 LEU291 ALA292 VAL293 GLN294 ARG295 LEU296 MSE297 GLN298 GLN299 GLY300 TYR301 GLY302 PHE303 ALA304 GLY305 GLU306 GLY307 ASP308 TRP309 LYS310 THR311 ALA312 ALA313 LEU314 LEU315 ARG316 ILE317 MSE318 LYS319 VAL320 MSE321 SER322 THR323 GLY324 LEU325 GLN326 GLY327 GLY328 THR329 SER330 PHE331 MSE332 GLU333 ASP334 TYR335 THR336 TYR337 HIS338 PHE339 GLU340 LYS341 GLY342 ASN343 ASP344 LEU345 VAL346 LEU347 GLY348 SER349 HIS350 MSE351 LEU352 GLU353 VAL354 CYS355 PRO356 SER357 ILE358 ALA359 VAL360 GLU361 GLU362 LYS363 PRO364 ILE365 LEU366 ASP367 VAL368 GLN369 HIS370 LEU371 GLY372 ILE373 GLY374 GLY375 LYS376 ASP377 ASP378 PRO379 ALA380 ARG381 LEU382 ILE383 PHE384 ASN385 THR386 GLN387 THR388 GLY389 PRO390 ALA391 ILE392 VAL393 ALA394 SER395 LEU396 ILE397 ASP398 LEU399 GLY400 ASP401 ARG402 TYR403 ARG404 LEU405 LEU406 VAL407 ASN408 CYS409 ILE410 ASP411 THR412 VAL413 LYS414 THR415 PRO416 HIS417 SER418 LEU419 PRO420 LYS421 LEU422 PRO423 VAL424 ALA425 ASN426 ALA427 LEU428 TRP429 LYS430 ALA431 GLN432 PRO433 ASP434 LEU435 PRO436 THR437 ALA438 SER439 GLU440 ALA441 TRP442 ILE443 LEU444 ALA445 GLY446 GLY447 ALA448 HIS449 HIS450 THR451 VAL452 PHE453 SER454 HIS455 ALA456 LEU457 ASN458 LEU459 ASN460 ASP461 MSE462 ARG463 GLN464 PHE465 ALA466 GLU467 MSE468 HIS469 ASP470 ILE471 GLU472 ILE473 THR474 VAL475 ILE476 ASP477 ASN478 ASP479 THR480 ARG481 LEU482 PRO483 ALA484 PHE485 LYS486 ASP487 ALA488 LEU489 ARG490 TRP491 ASN492 GLU493 VAL494 TYR495 TYR496 GLY497 PHE498
Ligands
Unit 4 MN601 RB0602
Unit 5 MN601 RB0602 ACY603
Unit 6 MN601 RB0602
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany