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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF TDP2 FROM DANIO RERIO COMPLEXED WITH A STRAND DNA
Keywords 5'-TYROSYL DNA PHOSPHODIESTERASE, HYDROLASE-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4F1H     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Other macromolecule   DNA (5'-D(P*TP*GP*CP*AP*G)-3')  C 5 105 0
2  Protein   TYROSYL-DNA PHOSPHODIESTERASE 2  A 250 1998 0
3  Protein   TYROSYL-DNA PHOSPHODIESTERASE 2  B 251 2007 0
4  Ligand   DNA (5'-D(P*TP*GP*CP*AP*G)-3')  C 1 0 4
5  Ligand   TYROSYL-DNA PHOSPHODIESTERASE 2  A 3 0 13
6  Ligand   TYROSYL-DNA PHOSPHODIESTERASE 2  B 2 0 12
7 Water     586 0 586
total       1098 4110 615
Proteins
Unit 2 ASP120 SER121 LYS122 LEU123 SER124 ILE125 ILE126 SER127 TRP128 ASN129 VAL130 ASP131 GLY132 LEU133 ASP134 THR135 LEU136 ASN137 LEU138 ALA139 ASP140 ARG141 ALA142 ARG143 GLY144 LEU145 CYS146 SER147 TYR148 LEU149 ALA150 LEU151 TYR152 THR153 PRO154 ASP155 VAL156 VAL157 PHE158 LEU159 GLN160 GLU161 LEU162 ILE163 PRO164 ALA165 TYR166 VAL167 GLN168 TYR169 LEU170 LYS171 LYS172 ARG173 ALA174 VAL175 SER176 TYR177 LEU178 PHE179 PHE180 GLU181 GLY182 SER183 ASP184 ASP185 GLY186 TYR187 PHE188 THR189 GLY190 ILE191 MET192 LEU193 ARG194 LYS195 SER196 ARG197 VAL198 LYS199 PHE200 LEU201 GLU202 SER203 GLU204 ILE205 ILE206 CYS207 PHE208 PRO209 THR210 THR211 GLN212 MET213 MET214 ARG215 ASN216 LEU217 LEU218 ILE219 ALA220 GLN221 VAL222 THR223 PHE224 SER225 GLY226 GLN227 LYS228 LEU229 TYR230 LEU231 MET232 THR233 SER234 HIS235 LEU236 GLU237 SER238 CYS239 LYS240 ASN241 GLN242 SER243 GLN244 GLU245 ARG246 THR247 LYS248 GLN249 LEU250 ARG251 VAL252 VAL253 LEU254 GLN255 LYS256 ILE257 LYS258 GLU259 ALA260 PRO261 GLU262 ASP263 ALA264 ILE265 VAL266 ILE267 PHE268 ALA269 GLY270 ASP271 THR272 ASN273 LEU274 ARG275 ASP276 ALA277 GLU278 VAL279 ALA280 ASN281 VAL282 GLY283 GLY284 LEU285 PRO286 ALA287 GLY288 VAL289 CYS290 ASP291 VAL292 TRP293 GLU294 GLN295 LEU296 GLY297 LYS298 GLN299 GLU300 HIS301 CYS302 ARG303 TYR304 THR305 TRP306 ASP307 THR308 LYS309 ALA310 ASN311 SER312 ASN313 LYS314 THR315 VAL316 PRO317 TYR318 VAL319 SER320 ARG321 CYS322 ARG323 PHE324 ASP325 ARG326 ILE327 PHE328 LEU329 ARG330 SER331 ALA332 LYS333 THR334 ALA335 PRO336 PRO337 VAL338 THR339 PRO340 ASP341 HIS342 MET343 ALA344 LEU345 ILE346 GLY347 MET348 GLU349 LYS350 LEU351 ASP352 CYS353 GLY354 ARG355 TYR356 THR357 SER358 ASP359 HIS360 TRP361 GLY362 ILE363 TYR364 CYS365 THR366 PHE367 ASN368 THR369
Unit 3 GLU119 ASP120 SER121 LYS122 LEU123 SER124 ILE125 ILE126 SER127 TRP128 ASN129 VAL130 ASP131 GLY132 LEU133 ASP134 THR135 LEU136 ASN137 LEU138 ALA139 ASP140 ARG141 ALA142 ARG143 GLY144 LEU145 CYS146 SER147 TYR148 LEU149 ALA150 LEU151 TYR152 THR153 PRO154 ASP155 VAL156 VAL157 PHE158 LEU159 GLN160 GLU161 LEU162 ILE163 PRO164 ALA165 TYR166 VAL167 GLN168 TYR169 LEU170 LYS171 LYS172 ARG173 ALA174 VAL175 SER176 TYR177 LEU178 PHE179 PHE180 GLU181 GLY182 SER183 ASP184 ASP185 GLY186 TYR187 PHE188 THR189 GLY190 ILE191 MET192 LEU193 ARG194 LYS195 SER196 ARG197 VAL198 LYS199 PHE200 LEU201 GLU202 SER203 GLU204 ILE205 ILE206 CYS207 PHE208 PRO209 THR210 THR211 GLN212 MET213 MET214 ARG215 ASN216 LEU217 LEU218 ILE219 ALA220 GLN221 VAL222 THR223 PHE224 SER225 GLY226 GLN227 LYS228 LEU229 TYR230 LEU231 MET232 THR233 SER234 HIS235 LEU236 GLU237 SER238 CYS239 LYS240 ASN241 GLN242 SER243 GLN244 GLU245 ARG246 THR247 LYS248 GLN249 LEU250 ARG251 VAL252 VAL253 LEU254 GLN255 LYS256 ILE257 LYS258 GLU259 ALA260 PRO261 GLU262 ASP263 ALA264 ILE265 VAL266 ILE267 PHE268 ALA269 GLY270 ASP271 THR272 ASN273 LEU274 ARG275 ASP276 ALA277 GLU278 VAL279 ALA280 ASN281 VAL282 GLY283 GLY284 LEU285 PRO286 ALA287 GLY288 VAL289 CYS290 ASP291 VAL292 TRP293 GLU294 GLN295 LEU296 GLY297 LYS298 GLN299 GLU300 HIS301 CYS302 ARG303 TYR304 THR305 TRP306 ASP307 THR308 LYS309 ALA310 ASN311 SER312 ASN313 LYS314 THR315 VAL316 PRO317 TYR318 VAL319 SER320 ARG321 CYS322 ARG323 PHE324 ASP325 ARG326 ILE327 PHE328 LEU329 ARG330 SER331 ALA332 LYS333 THR334 ALA335 PRO336 PRO337 VAL338 THR339 PRO340 ASP341 HIS342 MET343 ALA344 LEU345 ILE346 GLY347 MET348 GLU349 LYS350 LEU351 ASP352 CYS353 GLY354 ARG355 TYR356 THR357 SER358 ASP359 HIS360 TRP361 GLY362 ILE363 TYR364 CYS365 THR366 PHE367 ASN368 THR369
Other macromolecules
Unit 1 DT1 DG2 DC3 DA4 DG5
Ligands
Unit 4 PO4101
Unit 5 GOL401 MG402 GOL403
Unit 6 GOL401 GOL402
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany