Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title THE CRYSTAL STRUCTURE OF KDM6B BOUND WITH H3K27ME3 PEPTIDE
Keywords JMJC, HISTONE DEMETHYLASE, HISTONE K27ME3/ME2 'ERASER', OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4EZH     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LYSINE-SPECIFIC DEMETHYLASE 6B  A 455 3668 0
2  Protein   LYSINE-SPECIFIC DEMETHYLASE 6B  B 451 3627 0
3  Protein   SYNTHESIZED METHYLATION PEPTIDE  C 11 59 12
4  Protein   SYNTHESIZED METHYLATION PEPTIDE  D 11 59 12
5  Ligand   LYSINE-SPECIFIC DEMETHYLASE 6B  A 3 0 12
6  Ligand   LYSINE-SPECIFIC DEMETHYLASE 6B  B 3 0 12
7 Water     82 0 82
total       1016 7413 130
Proteins
Unit 1 GLU1157 SER1158 TYR1159 LEU1160 SER1161 PRO1162 ALA1163 GLN1164 SER1165 VAL1166 LYS1167 PRO1168 LYS1169 ILE1170 ASN1171 THR1172 GLU1173 GLU1174 LYS1175 LEU1176 PRO1177 ARG1178 GLU1179 LYS1180 LEU1181 ASN1182 PRO1183 PRO1184 THR1185 PRO1186 SER1187 ILE1188 TYR1189 LEU1190 GLU1191 SER1192 LYS1193 ARG1194 ASP1195 ALA1196 PHE1197 SER1198 PRO1199 VAL1200 LEU1201 LEU1202 GLN1203 PHE1204 CYS1205 THR1206 ASP1207 PRO1208 ARG1209 ASN1210 PRO1211 ILE1212 THR1213 VAL1214 ILE1215 ARG1216 GLY1217 LEU1218 ALA1219 GLY1220 SER1221 LEU1222 ARG1223 LEU1224 ASN1225 LEU1226 GLY1227 LEU1228 PHE1229 SER1230 THR1231 LYS1232 THR1233 LEU1234 VAL1235 GLU1236 ALA1237 SER1238 GLY1239 GLU1240 HIS1241 THR1242 VAL1243 GLU1244 VAL1245 ARG1246 THR1247 GLN1248 VAL1249 GLN1250 GLN1251 PRO1252 SER1253 ASP1254 GLU1255 ASN1256 TRP1257 ASP1258 LEU1259 THR1260 GLY1261 THR1262 ARG1263 GLN1264 ILE1265 TRP1266 PRO1267 CYS1268 GLU1269 SER1270 SER1271 ARG1272 SER1273 HIS1274 THR1275 THR1276 ILE1277 ALA1278 LYS1279 TYR1280 ALA1281 GLN1282 TYR1283 GLN1284 ALA1285 SER1286 SER1287 PHE1288 GLN1289 GLU1290 SER1291 LEU1292 GLN1293 GLU1294 GLU1295 LEU1296 GLU1297 VAL1298 LEU1299 PHE1300 GLN1301 HIS1323 HIS1324 ILE1325 ILE1326 LYS1327 PHE1328 GLY1329 THR1330 ASN1331 ILE1332 ASP1333 LEU1334 SER1335 ASP1336 ALA1337 LYS1338 ARG1339 TRP1340 LYS1341 PRO1342 GLN1343 LEU1344 GLN1345 GLU1346 LEU1347 LEU1348 LYS1349 LEU1350 PRO1351 ALA1352 PHE1353 MET1354 ARG1355 VAL1356 THR1357 SER1358 THR1359 GLY1360 ASN1361 MET1362 LEU1363 SER1364 HIS1365 VAL1366 GLY1367 HIS1368 THR1369 ILE1370 LEU1371 GLY1372 MET1373 ASN1374 THR1375 VAL1376 GLN1377 LEU1378 TYR1379 MET1380 LYS1381 VAL1382 PRO1383 GLY1384 SER1385 ARG1386 THR1387 PRO1388 GLY1389 HIS1390 GLN1391 GLU1392 ASN1393 ASN1394 ASN1395 PHE1396 CYS1397 SER1398 VAL1399 ASN1400 ILE1401 ASN1402 ILE1403 GLY1404 PRO1405 GLY1406 ASP1407 CYS1408 GLU1409 TRP1410 PHE1411 ALA1412 VAL1413 HIS1414 GLU1415 HIS1416 TYR1417 TRP1418 GLU1419 THR1420 ILE1421 SER1422 ALA1423 PHE1424 CYS1425 ASP1426 ARG1427 HIS1428 GLY1429 VAL1430 ASP1431 TYR1432 LEU1433 THR1434 GLY1435 SER1436 TRP1437 TRP1438 PRO1439 ILE1440 LEU1441 ASP1442 ASP1443 LEU1444 TYR1445 ALA1446 SER1447 ASN1448 ILE1449 PRO1450 VAL1451 TYR1452 ARG1453 PHE1454 VAL1455 GLN1456 ARG1457 PRO1458 GLY1459 ASP1460 LEU1461 VAL1462 TRP1463 ILE1464 ASN1465 ALA1466 GLY1467 THR1468 VAL1469 HIS1470 TRP1471 VAL1472 GLN1473 ALA1474 THR1475 GLY1476 TRP1477 CYS1478 ASN1479 ASN1480 ILE1481 ALA1482 TRP1483 ASN1484 VAL1485 GLY1486 PRO1487 LEU1488 THR1489 ALA1490 TYR1491 GLN1492 TYR1493 GLN1494 LEU1495 ALA1496 LEU1497 GLU1498 ARG1499 TYR1500 GLU1501 TRP1502 ASN1503 GLU1504 VAL1505 LYS1506 ASN1507 VAL1508 LYS1509 SER1510 ILE1511 VAL1512 PRO1513 MET1514 ILE1515 HIS1516 VAL1517 SER1518 TRP1519 ASN1520 VAL1521 ALA1522 ARG1523 THR1524 VAL1525 LYS1526 ILE1527 SER1528 ASP1529 PRO1530 ASP1531 LEU1532 PHE1533 LYS1534 MET1535 ILE1536 LYS1537 PHE1538 CYS1539 LEU1540 LEU1541 GLN1542 SER1543 MET1544 LYS1545 HIS1546 CYS1547 GLN1548 VAL1549 GLN1550 ARG1551 GLU1552 SER1553 LEU1554 VAL1555 ARG1556 ALA1557 GLY1558 LYS1559 LYS1560 ILE1561 ALA1562 TYR1563 GLN1564 GLY1565 ARG1566 VAL1567 LYS1568 ASP1569 GLU1570 PRO1571 ALA1572 TYR1573 TYR1574 CYS1575 ASN1576 GLU1577 CYS1578 ASP1579 VAL1580 GLU1581 VAL1582 PHE1583 ASN1584 ILE1585 LEU1586 PHE1587 VAL1588 THR1589 SER1590 THR1597 TYR1598 LEU1599 VAL1600 HIS1601 CYS1602 GLU1603 GLY1604 CYS1605 ALA1606 ARG1607 ARG1608 ARG1609 SER1610 ALA1611 GLY1612 LEU1613 GLN1614 GLY1615 VAL1616 VAL1617 VAL1618 LEU1619 GLU1620 GLN1621 TYR1622 ARG1623 THR1624 GLU1625 GLU1626 LEU1627 ALA1628 GLN1629 ALA1630 TYR1631 ASP1632 ALA1633 PHE1634 THR1635 LEU1636 ALA1637 PRO1638
Unit 2 GLU1157 SER1158 TYR1159 LEU1160 SER1161 PRO1162 ALA1163 GLN1164 SER1165 VAL1166 LYS1167 PRO1168 LYS1169 ILE1170 GLU1174 LYS1175 LEU1176 PRO1177 ARG1178 GLU1179 LYS1180 LEU1181 ASN1182 PRO1183 PRO1184 THR1185 PRO1186 SER1187 ILE1188 TYR1189 LEU1190 GLU1191 SER1192 LYS1193 ARG1194 ASP1195 ALA1196 PHE1197 SER1198 PRO1199 VAL1200 LEU1201 LEU1202 GLN1203 PHE1204 CYS1205 THR1206 ASP1207 PRO1208 ARG1209 ASN1210 PRO1211 ILE1212 THR1213 VAL1214 ILE1215 ARG1216 GLY1217 LEU1218 ALA1219 GLY1220 SER1221 LEU1222 ARG1223 LEU1224 ASN1225 LEU1226 GLY1227 LEU1228 PHE1229 SER1230 THR1231 LYS1232 THR1233 LEU1234 VAL1235 GLU1236 ALA1237 SER1238 GLY1239 GLU1240 HIS1241 THR1242 VAL1243 GLU1244 VAL1245 ARG1246 THR1247 GLN1248 VAL1249 GLN1250 GLN1251 PRO1252 SER1253 ASP1254 GLU1255 ASN1256 TRP1257 ASP1258 LEU1259 THR1260 GLY1261 THR1262 ARG1263 GLN1264 ILE1265 TRP1266 PRO1267 CYS1268 GLU1269 SER1270 SER1271 ARG1272 SER1273 HIS1274 THR1275 THR1276 ILE1277 ALA1278 LYS1279 TYR1280 ALA1281 GLN1282 TYR1283 GLN1284 ALA1285 SER1286 SER1287 PHE1288 GLN1289 GLU1290 SER1291 LEU1292 GLN1293 GLU1294 GLU1295 LEU1296 GLU1297 VAL1298 LEU1299 PHE1300 HIS1323 HIS1324 ILE1325 ILE1326 LYS1327 PHE1328 GLY1329 THR1330 ASN1331 ILE1332 ASP1333 LEU1334 SER1335 ASP1336 ALA1337 LYS1338 ARG1339 TRP1340 LYS1341 PRO1342 GLN1343 LEU1344 GLN1345 GLU1346 LEU1347 LEU1348 LYS1349 LEU1350 PRO1351 ALA1352 PHE1353 MET1354 ARG1355 VAL1356 THR1357 SER1358 THR1359 GLY1360 ASN1361 MET1362 LEU1363 SER1364 HIS1365 VAL1366 GLY1367 HIS1368 THR1369 ILE1370 LEU1371 GLY1372 MET1373 ASN1374 THR1375 VAL1376 GLN1377 LEU1378 TYR1379 MET1380 LYS1381 VAL1382 PRO1383 GLY1384 SER1385 ARG1386 THR1387 PRO1388 GLY1389 HIS1390 GLN1391 GLU1392 ASN1393 ASN1394 ASN1395 PHE1396 CYS1397 SER1398 VAL1399 ASN1400 ILE1401 ASN1402 ILE1403 GLY1404 PRO1405 GLY1406 ASP1407 CYS1408 GLU1409 TRP1410 PHE1411 ALA1412 VAL1413 HIS1414 GLU1415 HIS1416 TYR1417 TRP1418 GLU1419 THR1420 ILE1421 SER1422 ALA1423 PHE1424 CYS1425 ASP1426 ARG1427 HIS1428 GLY1429 VAL1430 ASP1431 TYR1432 LEU1433 THR1434 GLY1435 SER1436 TRP1437 TRP1438 PRO1439 ILE1440 LEU1441 ASP1442 ASP1443 LEU1444 TYR1445 ALA1446 SER1447 ASN1448 ILE1449 PRO1450 VAL1451 TYR1452 ARG1453 PHE1454 VAL1455 GLN1456 ARG1457 PRO1458 GLY1459 ASP1460 LEU1461 VAL1462 TRP1463 ILE1464 ASN1465 ALA1466 GLY1467 THR1468 VAL1469 HIS1470 TRP1471 VAL1472 GLN1473 ALA1474 THR1475 GLY1476 TRP1477 CYS1478 ASN1479 ASN1480 ILE1481 ALA1482 TRP1483 ASN1484 VAL1485 GLY1486 PRO1487 LEU1488 THR1489 ALA1490 TYR1491 GLN1492 TYR1493 GLN1494 LEU1495 ALA1496 LEU1497 GLU1498 ARG1499 TYR1500 GLU1501 TRP1502 ASN1503 GLU1504 VAL1505 LYS1506 ASN1507 VAL1508 LYS1509 SER1510 ILE1511 VAL1512 PRO1513 MET1514 ILE1515 HIS1516 VAL1517 SER1518 TRP1519 ASN1520 VAL1521 ALA1522 ARG1523 THR1524 VAL1525 LYS1526 ILE1527 SER1528 ASP1529 PRO1530 ASP1531 LEU1532 PHE1533 LYS1534 MET1535 ILE1536 LYS1537 PHE1538 CYS1539 LEU1540 LEU1541 GLN1542 SER1543 MET1544 LYS1545 HIS1546 CYS1547 GLN1548 VAL1549 GLN1550 ARG1551 GLU1552 SER1553 LEU1554 VAL1555 ARG1556 ALA1557 GLY1558 LYS1559 LYS1560 ILE1561 ALA1562 TYR1563 GLN1564 GLY1565 ARG1566 VAL1567 LYS1568 ASP1569 GLU1570 PRO1571 ALA1572 TYR1573 TYR1574 CYS1575 ASN1576 GLU1577 CYS1578 ASP1579 VAL1580 GLU1581 VAL1582 PHE1583 ASN1584 ILE1585 LEU1586 PHE1587 VAL1588 THR1589 SER1590 THR1597 TYR1598 LEU1599 VAL1600 HIS1601 CYS1602 GLU1603 GLY1604 CYS1605 ALA1606 ARG1607 ARG1608 ARG1609 SER1610 ALA1611 GLY1612 LEU1613 GLN1614 GLY1615 VAL1616 VAL1617 VAL1618 LEU1619 GLU1620 GLN1621 TYR1622 ARG1623 THR1624 GLU1625 GLU1626 LEU1627 ALA1628 GLN1629 ALA1630 TYR1631 ASP1632 ALA1633 PHE1634 THR1635 LEU1636 ALA1637 PRO1638
Unit 3 ALA24 ALA25 ARG26 M3L27 SER28 ALA29 PRO30 ALA31 THR32 GLY33 GLY34
Unit 4 ALA24 ALA25 ARG26 M3L27 SER28 ALA29 PRO30 ALA31 THR32 GLY33 GLY34
Ligands
Unit 5 NI1701 ZN1702 OGA1703
Unit 6 NI1701 ZN1702 OGA1703
Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany