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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE DESIGNED INHIBITOR PROTEIN F-HB80.4 COMPLEX WITH THE 1918 INFLUENZA VIRUS HEMAGGLUTININ.
Keywords IMMUNOGLOBULIN, HEMAGGLUTININ, FUSION OF VIRUS MEMBRANE WITH MEMBRANE, MEMBRANE FUSION, SIALIC ACID, VIRION, IMMUNE SYST IMMUNE SYSTEM-INHIBITOR COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4EEF     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HEMAGGLUTININ HA1 CHAIN  A 325 2518 0
2  Protein   HEMAGGLUTININ HA2 CHAIN  B 173 1394 0
3  Protein   HEMAGGLUTININ HA1 CHAIN  C 323 2504 0
4  Protein   HEMAGGLUTININ HA2 CHAIN  D 173 1394 0
5  Protein   HEMAGGLUTININ HA1 CHAIN  E 323 2504 0
6  Protein   HEMAGGLUTININ HA2 CHAIN  F 171 1377 0
7  Protein   F-HB80.4, DESIGNED HEMAGGLUTININ BINDING PROTEIN  G 45 301 0
8  Protein   F-HB80.4, DESIGNED HEMAGGLUTININ BINDING PROTEIN  H 47 303 0
9  Protein   F-HB80.4, DESIGNED HEMAGGLUTININ BINDING PROTEIN  I 47 294 0
10  Ligand    J 3 0 39
11  Ligand    K 3 0 39
12  Ligand    L 3 0 39
13 Water     139 0 139
total       1775 12589 256
Proteins
Unit 1 GLY10 ASP11 THR12 ILE13 CYS14 ILE15 GLY16 TYR17 HIS18 ALA19 ASN20 ASN21 SER22 THR23 ASP24 THR25 VAL26 ASP27 THR28 VAL29 LEU30 GLU31 LYS32 ASN33 VAL34 THR35 VAL36 THR37 HIS38 SER39 VAL40 ASN41 LEU42 LEU43 GLU44 ASP45 SER46 HIS47 ASN48 GLY49 LYS50 LEU51 CYS52 LYS53 LEU54 LYS54A GLY55 ILE56 ALA57 PRO58 LEU59 GLN60 LEU61 GLY62 LYS63 CYS64 ASN65 ILE66 ALA67 GLY68 TRP69 LEU70 LEU71 GLY72 ASN73 PRO74 GLU75 CYS76 ASP77 LEU78 LEU79 LEU80 THR81 ALA82 SER83 SER83A TRP84 SER85 TYR86 ILE87 VAL88 GLU89 THR90 SER91 ASN92 SER93 GLU94 ASN95 GLY95A THR96 CYS97 TYR98 PRO99 GLY100 ASP101 PHE102 ILE103 ASP104 TYR105 GLU106 GLU107 LEU108 ARG109 GLU110 GLN111 LEU112 SER113 SER114 VAL115 SER116 SER117 PHE118 GLU119 LYS120 PHE121 GLU122 ILE123 PHE124 PRO125 LYS125A THR125B SER125C SER126 TRP127 PRO128 ASN129 HIS130 GLU131 THR132 THR133 LYS133A GLY134 VAL135 THR136 ALA137 ALA138 CYS139 SER140 TYR141 ALA142 GLY143 ALA144 SER145 SER146 PHE147 TYR148 ARG149 ASN150 LEU151 LEU152 TRP153 LEU154 THR155 LYS156 LYS157 GLY158 SER159 SER160 TYR161 PRO162 LYS163 LEU164 SER165 LYS166 SER167 TYR168 VAL169 ASN170 ASN171 LYS172 GLY173 LYS174 GLU175 VAL176 LEU177 VAL178 LEU179 TRP180 GLY181 VAL182 HIS183 HIS184 PRO185 PRO186 THR187 GLY188 THR189 ASP190 GLN191 GLN192 SER193 LEU194 TYR195 GLN196 ASN197 ALA198 ASP199 ALA200 TYR201 VAL202 SER203 VAL204 GLY205 SER206 SER207 LYS208 TYR209 ASN210 ARG211 ARG212 PHE213 THR214 PRO215 GLU216 ILE217 ALA218 ALA219 ARG220 PRO221 LYS222 VAL223 ARG224 ASP225 GLN226 ALA227 GLY228 ARG229 MET230 ASN231 TYR232 TYR233 TRP234 THR235 LEU236 LEU237 GLU238 PRO239 GLY240 ASP241 THR242 ILE243 THR244 PHE245 GLU246 ALA247 THR248 GLY249 ASN250 LEU251 ILE252 ALA253 PRO254 TRP255 TYR256 ALA257 PHE258 ALA259 LEU260 ASN261 ARG262 GLY263 SER264 GLY264A SER265 GLY266 ILE267 ILE268 THR269 SER270 ASP271 ALA272 PRO273 VAL274 HIS275 ASP276 CYS277 ASN278 THR279 LYS280 CYS281 GLN282 THR283 PRO284 HIS285 GLY286 ALA287 ILE288 ASN289 SER290 SER291 LEU292 PRO293 PHE294 GLN295 ASN296 ILE297 HIS298 PRO299 VAL300 THR301 ILE302 GLY303 GLU304 CYS305 PRO306 LYS307 TYR308 VAL309 ARG310 SER311 THR312 LYS313 LEU314 ARG315 MET316 ALA317 THR318 GLY319 LEU320 ARG321 ASN322 ILE323 PRO324 SER325 ILE326
Unit 2 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 GLY12 GLY13 TRP14 THR15 GLY16 MET17 ILE18 ASP19 GLY20 TRP21 TYR22 GLY23 TYR24 HIS25 HIS26 GLN27 ASN28 GLU29 GLN30 GLY31 SER32 GLY33 TYR34 ALA35 ALA36 ASP37 GLN38 LYS39 SER40 THR41 GLN42 ASN43 ALA44 ILE45 ASP46 GLY47 ILE48 THR49 ASN50 LYS51 VAL52 ASN53 SER54 VAL55 ILE56 GLU57 LYS58 MET59 ASN60 THR61 GLN62 PHE63 THR64 ALA65 VAL66 GLY67 LYS68 GLU69 PHE70 ASN71 ASN72 LEU73 GLU74 ARG75 ARG76 ILE77 GLU78 ASN79 LEU80 ASN81 LYS82 LYS83 VAL84 ASP85 ASP86 GLY87 PHE88 LEU89 ASP90 ILE91 TRP92 THR93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 LEU101 LEU102 GLU103 ASN104 GLU105 ARG106 THR107 LEU108 ASP109 PHE110 HIS111 ASP112 SER113 ASN114 VAL115 ARG116 ASN117 LEU118 TYR119 GLU120 LYS121 VAL122 LYS123 SER124 GLN125 LEU126 LYS127 ASN128 ASN129 ALA130 LYS131 GLU132 ILE133 GLY134 ASN135 GLY136 CYS137 PHE138 GLU139 PHE140 TYR141 HIS142 LYS143 CYS144 ASP145 ASP146 ALA147 CYS148 MET149 GLU150 SER151 VAL152 ARG153 ASN154 GLY155 THR156 TYR157 ASP158 TYR159 PRO160 LYS161 TYR162 SER163 GLU164 GLU165 SER166 LYS167 LEU168 ASN169 ARG170 GLU171 GLU172 ILE173
Unit 3 GLY10 ASP11 THR12 ILE13 CYS14 ILE15 GLY16 TYR17 HIS18 ALA19 ASN20 ASN21 SER22 THR23 ASP24 THR25 VAL26 ASP27 THR28 VAL29 LEU30 GLU31 LYS32 ASN33 VAL34 THR35 VAL36 THR37 HIS38 SER39 VAL40 ASN41 LEU42 LEU43 GLU44 ASP45 SER46 HIS47 ASN48 GLY49 LYS50 LEU51 CYS52 LYS53 LEU54 LYS54A GLY55 ILE56 ALA57 PRO58 LEU59 GLN60 LEU61 GLY62 LYS63 CYS64 ASN65 ILE66 ALA67 GLY68 TRP69 LEU70 LEU71 GLY72 ASN73 PRO74 GLU75 CYS76 ASP77 LEU78 LEU79 LEU80 THR81 ALA82 SER83 SER83A TRP84 SER85 TYR86 ILE87 VAL88 GLU89 THR90 SER91 ASN92 SER93 GLU94 ASN95 GLY95A THR96 CYS97 TYR98 PRO99 GLY100 ASP101 PHE102 ILE103 ASP104 TYR105 GLU106 GLU107 LEU108 ARG109 GLU110 GLN111 LEU112 SER113 SER114 VAL115 SER116 SER117 PHE118 GLU119 LYS120 PHE121 GLU122 ILE123 PHE124 PRO125 LYS125A THR125B SER125C SER126 TRP127 PRO128 ASN129 HIS130 GLU131 THR132 THR133 LYS133A GLY134 VAL135 THR136 ALA137 ALA138 CYS139 SER140 TYR141 ALA142 GLY143 ALA144 SER145 SER146 PHE147 TYR148 ARG149 ASN150 LEU151 LEU152 TRP153 LEU154 THR155 LYS156 LYS157 GLY158 SER159 SER160 TYR161 PRO162 LYS163 LEU164 SER165 LYS166 SER167 TYR168 VAL169 ASN170 ASN171 LYS172 GLY173 LYS174 GLU175 VAL176 LEU177 VAL178 LEU179 TRP180 GLY181 VAL182 HIS183 HIS184 PRO185 PRO186 THR187 GLY188 THR189 ASP190 GLN191 GLN192 SER193 LEU194 TYR195 GLN196 ASN197 ALA198 ASP199 ALA200 TYR201 VAL202 SER203 VAL204 GLY205 SER206 SER207 LYS208 TYR209 ASN210 ARG211 ARG212 PHE213 THR214 PRO215 GLU216 ILE217 ALA218 ALA219 ARG220 PRO221 LYS222 VAL223 ARG224 ASP225 GLN226 ALA227 GLY228 ARG229 MET230 ASN231 TYR232 TYR233 TRP234 THR235 LEU236 LEU237 GLU238 PRO239 GLY240 ASP241 THR242 ILE243 THR244 PHE245 GLU246 ALA247 THR248 GLY249 ASN250 LEU251 ILE252 ALA253 PRO254 TRP255 TYR256 ALA257 PHE258 ALA259 LEU260 ASN261 ARG262 GLY263 SER264 GLY264A SER265 GLY266 ILE267 ILE268 THR269 SER270 ASP271 ALA272 PRO273 VAL274 HIS275 ASP276 CYS277 ASN278 THR279 LYS280 CYS281 GLN282 THR283 PRO284 HIS285 GLY286 ALA287 ILE288 ASN289 SER290 SER291 LEU292 PRO293 PHE294 GLN295 ASN296 ILE297 HIS298 PRO299 VAL300 THR301 ILE302 GLY303 GLU304 CYS305 PRO306 LYS307 TYR308 VAL309 ARG310 SER311 THR312 LYS313 LEU314 ARG315 MET316 ALA317 THR318 GLY319 LEU320 ARG321 ASN322 ILE323 PRO324
Unit 4 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 GLY12 GLY13 TRP14 THR15 GLY16 MET17 ILE18 ASP19 GLY20 TRP21 TYR22 GLY23 TYR24 HIS25 HIS26 GLN27 ASN28 GLU29 GLN30 GLY31 SER32 GLY33 TYR34 ALA35 ALA36 ASP37 GLN38 LYS39 SER40 THR41 GLN42 ASN43 ALA44 ILE45 ASP46 GLY47 ILE48 THR49 ASN50 LYS51 VAL52 ASN53 SER54 VAL55 ILE56 GLU57 LYS58 MET59 ASN60 THR61 GLN62 PHE63 THR64 ALA65 VAL66 GLY67 LYS68 GLU69 PHE70 ASN71 ASN72 LEU73 GLU74 ARG75 ARG76 ILE77 GLU78 ASN79 LEU80 ASN81 LYS82 LYS83 VAL84 ASP85 ASP86 GLY87 PHE88 LEU89 ASP90 ILE91 TRP92 THR93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 LEU101 LEU102 GLU103 ASN104 GLU105 ARG106 THR107 LEU108 ASP109 PHE110 HIS111 ASP112 SER113 ASN114 VAL115 ARG116 ASN117 LEU118 TYR119 GLU120 LYS121 VAL122 LYS123 SER124 GLN125 LEU126 LYS127 ASN128 ASN129 ALA130 LYS131 GLU132 ILE133 GLY134 ASN135 GLY136 CYS137 PHE138 GLU139 PHE140 TYR141 HIS142 LYS143 CYS144 ASP145 ASP146 ALA147 CYS148 MET149 GLU150 SER151 VAL152 ARG153 ASN154 GLY155 THR156 TYR157 ASP158 TYR159 PRO160 LYS161 TYR162 SER163 GLU164 GLU165 SER166 LYS167 LEU168 ASN169 ARG170 GLU171 GLU172 ILE173
Unit 5 GLY10 ASP11 THR12 ILE13 CYS14 ILE15 GLY16 TYR17 HIS18 ALA19 ASN20 ASN21 SER22 THR23 ASP24 THR25 VAL26 ASP27 THR28 VAL29 LEU30 GLU31 LYS32 ASN33 VAL34 THR35 VAL36 THR37 HIS38 SER39 VAL40 ASN41 LEU42 LEU43 GLU44 ASP45 SER46 HIS47 ASN48 GLY49 LYS50 LEU51 CYS52 LYS53 LEU54 LYS54A GLY55 ILE56 ALA57 PRO58 LEU59 GLN60 LEU61 GLY62 LYS63 CYS64 ASN65 ILE66 ALA67 GLY68 TRP69 LEU70 LEU71 GLY72 ASN73 PRO74 GLU75 CYS76 ASP77 LEU78 LEU79 LEU80 THR81 ALA82 SER83 SER83A TRP84 SER85 TYR86 ILE87 VAL88 GLU89 THR90 SER91 ASN92 SER93 GLU94 ASN95 GLY95A THR96 CYS97 TYR98 PRO99 GLY100 ASP101 PHE102 ILE103 ASP104 TYR105 GLU106 GLU107 LEU108 ARG109 GLU110 GLN111 LEU112 SER113 SER114 VAL115 SER116 SER117 PHE118 GLU119 LYS120 PHE121 GLU122 ILE123 PHE124 PRO125 LYS125A THR125B SER125C SER126 TRP127 PRO128 ASN129 HIS130 GLU131 THR132 THR133 LYS133A GLY134 VAL135 THR136 ALA137 ALA138 CYS139 SER140 TYR141 ALA142 GLY143 ALA144 SER145 SER146 PHE147 TYR148 ARG149 ASN150 LEU151 LEU152 TRP153 LEU154 THR155 LYS156 LYS157 GLY158 SER159 SER160 TYR161 PRO162 LYS163 LEU164 SER165 LYS166 SER167 TYR168 VAL169 ASN170 ASN171 LYS172 GLY173 LYS174 GLU175 VAL176 LEU177 VAL178 LEU179 TRP180 GLY181 VAL182 HIS183 HIS184 PRO185 PRO186 THR187 GLY188 THR189 ASP190 GLN191 GLN192 SER193 LEU194 TYR195 GLN196 ASN197 ALA198 ASP199 ALA200 TYR201 VAL202 SER203 VAL204 GLY205 SER206 SER207 LYS208 TYR209 ASN210 ARG211 ARG212 PHE213 THR214 PRO215 GLU216 ILE217 ALA218 ALA219 ARG220 PRO221 LYS222 VAL223 ARG224 ASP225 GLN226 ALA227 GLY228 ARG229 MET230 ASN231 TYR232 TYR233 TRP234 THR235 LEU236 LEU237 GLU238 PRO239 GLY240 ASP241 THR242 ILE243 THR244 PHE245 GLU246 ALA247 THR248 GLY249 ASN250 LEU251 ILE252 ALA253 PRO254 TRP255 TYR256 ALA257 PHE258 ALA259 LEU260 ASN261 ARG262 GLY263 SER264 GLY264A SER265 GLY266 ILE267 ILE268 THR269 SER270 ASP271 ALA272 PRO273 VAL274 HIS275 ASP276 CYS277 ASN278 THR279 LYS280 CYS281 GLN282 THR283 PRO284 HIS285 GLY286 ALA287 ILE288 ASN289 SER290 SER291 LEU292 PRO293 PHE294 GLN295 ASN296 ILE297 HIS298 PRO299 VAL300 THR301 ILE302 GLY303 GLU304 CYS305 PRO306 LYS307 TYR308 VAL309 ARG310 SER311 THR312 LYS313 LEU314 ARG315 MET316 ALA317 THR318 GLY319 LEU320 ARG321 ASN322 ILE323 PRO324
Unit 6 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 GLY12 GLY13 TRP14 THR15 GLY16 MET17 ILE18 ASP19 GLY20 TRP21 TYR22 GLY23 TYR24 HIS25 HIS26 GLN27 ASN28 GLU29 GLN30 GLY31 SER32 GLY33 TYR34 ALA35 ALA36 ASP37 GLN38 LYS39 SER40 THR41 GLN42 ASN43 ALA44 ILE45 ASP46 GLY47 ILE48 THR49 ASN50 LYS51 VAL52 ASN53 SER54 VAL55 ILE56 GLU57 LYS58 MET59 ASN60 THR61 GLN62 PHE63 THR64 ALA65 VAL66 GLY67 LYS68 GLU69 PHE70 ASN71 ASN72 LEU73 GLU74 ARG75 ARG76 ILE77 GLU78 ASN79 LEU80 ASN81 LYS82 LYS83 VAL84 ASP85 ASP86 GLY87 PHE88 LEU89 ASP90 ILE91 TRP92 THR93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 LEU101 LEU102 GLU103 ASN104 GLU105 ARG106 THR107 LEU108 ASP109 PHE110 HIS111 ASP112 SER113 ASN114 VAL115 ARG116 ASN117 LEU118 TYR119 GLU120 LYS121 VAL122 LYS123 SER124 GLN125 LEU126 LYS127 ASN128 ASN129 ALA130 LYS131 GLU132 ILE133 GLY134 ASN135 GLY136 CYS137 PHE138 GLU139 PHE140 TYR141 HIS142 LYS143 CYS144 ASP145 ASP146 ALA147 CYS148 MET149 GLU150 SER151 VAL152 ARG153 ASN154 GLY155 THR156 TYR157 ASP158 TYR159 PRO160 LYS161 TYR162 SER163 GLU164 GLU165 SER166 LYS167 LEU168 ASN169 ARG170 GLU171
Unit 7 PRO10 TRP11 LYS12 PHE13 SER14 GLU15 ASN16 ILE17 ALA18 PHE19 GLU20 ILE21 ALA22 LEU23 SER24 PHE25 THR26 ASN27 LYS28 ASP29 THR30 PRO31 ASP32 ARG33 TRP34 LYS35 LYS36 VAL37 ALA38 GLN39 TYR40 VAL41 LYS42 GLY43 ARG44 THR45 PRO46 GLU47 GLU48 VAL49 LYS50 LYS51 HIS52 TYR53 GLU54
Unit 8 GLY8 ARG9 PRO10 TRP11 LYS12 PHE13 SER14 GLU15 ASN16 ILE17 ALA18 PHE19 GLU20 ILE21 ALA22 LEU23 SER24 PHE25 THR26 ASN27 LYS28 ASP29 THR30 PRO31 ASP32 ARG33 TRP34 LYS35 LYS36 VAL37 ALA38 GLN39 TYR40 VAL41 LYS42 GLY43 ARG44 THR45 PRO46 GLU47 GLU48 VAL49 LYS50 LYS51 HIS52 TYR53 GLU54
Unit 9 GLY8 ARG9 PRO10 TRP11 LYS12 PHE13 SER14 GLU15 ASN16 ILE17 ALA18 PHE19 GLU20 ILE21 ALA22 LEU23 SER24 PHE25 THR26 ASN27 LYS28 ASP29 THR30 PRO31 ASP32 ARG33 TRP34 LYS35 LYS36 VAL37 ALA38 GLN39 TYR40 VAL41 LYS42 GLY43 ARG44 THR45 PRO46 GLU47 GLU48 VAL49 LYS50 LYS51 HIS52 TYR53 GLU54
Ligands
Unit 10 NAG1 NAG2 BMA3
Unit 11 NAG1 NAG2 BMA3
Unit 12 NAG1 NAG2 BMA3
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany