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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURES OF MONOMERIC HEMAGGLUTININ AND ITS COMPLEX WITH A FRAGMENT OF A NEUTRALIZING ANTIBODY THAT BINDS TO H1 SUBTYP INFLUENZA VIRUSES: MOLECULAR BASIS OF INFECTIVITY OF 2009 P H1N1 INFLUENZA A VIRUSES
Keywords INFLUENZA VIRUS, HAEMAGGLUTININ, CONFORMATION, ANTIBODY, VIR PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4EDB     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HEMAGGLUTININ  A 323 2530 0
2  Protein   HEMAGGLUTININ  B 160 1281 0
3  Protein   HEMAGGLUTININ  C 323 2530 0
4  Protein   HEMAGGLUTININ  D 160 1281 0
5  Protein   HEMAGGLUTININ  E 323 2530 0
6  Protein   HEMAGGLUTININ  F 160 1281 0
7 Water     16 0 16
total       1465 11433 16
Proteins
Unit 1 ASP1 THR2 ILE3 CYS4 ILE5 GLY6 TYR7 HIS8 ALA9 ASN10 ASN11 SER12 THR13 ASP14 THR15 VAL16 ASP17 THR18 VAL19 LEU20 GLU21 LYS22 ASN23 VAL24 THR25 VAL26 THR27 HIS28 SER29 VAL30 ASN31 LEU32 LEU33 GLU34 ASP35 SER36 HIS37 ASN38 GLY39 LYS40 LEU41 CYS42 LEU43 LEU44 LYS45 GLY46 ILE47 ALA48 PRO49 LEU50 GLN51 LEU52 GLY53 ASN54 CYS55 SER56 VAL57 ALA58 GLY59 TRP60 ILE61 LEU62 GLY63 ASN64 PRO65 GLU66 CYS67 GLU68 LEU69 LEU70 ILE71 SER72 LYS73 GLU74 SER75 TRP76 SER77 TYR78 ILE79 VAL80 GLU81 LYS82 PRO83 ASN84 PRO85 GLU86 ASN87 GLY88 THR89 CYS90 TYR91 PRO92 GLY93 HIS94 PHE95 ALA96 ASP97 TYR98 GLU99 GLU100 LEU101 ARG102 GLU103 GLN104 LEU105 SER106 SER107 VAL108 SER109 SER110 PHE111 GLU112 ARG113 PHE114 GLU115 MET116 PHE117 PRO118 LYS119 GLU120 SER121 SER122 TRP123 PRO124 ASN125 HIS126 THR127 VAL128 THR129 GLY130 VAL131 SER132 ALA133 SER134 CYS135 SER136 HIS137 ASN138 GLY139 LYS140 SER141 SER142 PHE143 TYR144 LYS145 ASN146 LEU147 LEU148 TRP149 LEU150 THR151 GLY152 LYS153 ASN154 GLY155 LEU156 TYR157 PRO158 ASN159 LEU160 SER161 LYS162 SER163 TYR164 ALA165 ASN166 ASN167 LYS168 GLU169 LYS170 GLU171 VAL172 LEU173 VAL174 LEU175 TRP176 GLY177 VAL178 HIS179 HIS180 PRO181 PRO182 ASN183 ILE184 GLY185 ASP186 GLN187 ARG188 ALA189 LEU190 TYR191 HIS192 THR193 GLU194 ASN195 ALA196 TYR197 VAL198 SER199 VAL200 VAL201 SER202 SER203 HIS204 TYR205 SER206 ARG207 LYS208 PHE209 THR210 PRO211 GLU212 ILE213 ALA214 LYS215 ARG216 PRO217 LYS218 VAL219 ARG220 ASP221 GLN222 GLU223 GLY224 ARG225 ILE226 ASN227 TYR228 TYR229 TRP230 THR231 LEU232 LEU233 GLU234 PRO235 GLY236 ASP237 THR238 ILE239 ILE240 PHE241 GLU242 ALA243 ASN244 GLY245 ASN246 LEU247 ILE248 ALA249 PRO250 ARG251 TYR252 ALA253 PHE254 ALA255 LEU256 SER257 ARG258 GLY259 PHE260 GLY261 SER262 GLY263 ILE264 ILE265 ASN266 SER267 ASN268 ALA269 PRO270 MET271 ASP272 GLU273 CYS274 ASP275 ALA276 LYS277 CYS278 GLN279 THR280 PRO281 GLN282 GLY283 ALA284 ILE285 ASN286 SER287 SER288 LEU289 PRO290 PHE291 GLN292 ASN293 VAL294 HIS295 PRO296 VAL297 THR298 ILE299 GLY300 GLU301 CYS302 PRO303 LYS304 TYR305 VAL306 ARG307 SER308 ALA309 LYS310 LEU311 ARG312 MET313 VAL314 THR315 GLY316 LEU317 ARG318 ASN319 ILE320 PRO321 SER322 ILE323
Unit 2 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 GLY12 GLY13 TRP14 THR15 GLY16 MET17 VAL18 ASP19 GLY20 TRP21 TYR22 GLY23 TYR24 HIS25 HIS26 GLN27 ASN28 GLU29 GLN30 GLY31 SER32 GLY33 TYR34 ALA35 ALA36 ASP37 GLN38 LYS39 SER40 THR41 GLN42 ASN43 ALA44 ILE45 ASN46 GLY47 ILE48 THR49 ASN50 LYS51 VAL52 ASN53 SER54 VAL55 ILE56 GLU57 LYS58 MET59 ASN60 THR61 GLN62 PHE63 THR64 ALA65 VAL66 GLY67 LYS68 GLU69 PHE70 ASN71 LYS72 LEU73 GLU74 ARG75 ARG76 MET77 GLU78 ASN79 LEU80 ASN81 LYS82 LYS83 VAL84 ASP85 ASP86 GLY87 PHE88 ILE89 ASP90 ILE91 TRP92 THR93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 LEU101 LEU102 GLU103 ASN104 GLU105 ARG106 THR107 LEU108 ASP109 PHE110 HIS111 ASP112 SER113 ASN114 VAL115 LYS116 ASN117 LEU118 TYR119 GLU120 LYS121 VAL122 LYS123 SER124 GLN125 LEU126 LYS127 ASN128 ASN129 ALA130 LYS131 GLU132 ILE133 GLY134 ASN135 GLY136 CYS137 PHE138 GLU139 PHE140 TYR141 HIS142 LYS143 CYS144 ASN145 ASP146 GLU147 CYS148 MET149 GLU150 SER151 VAL152 LYS153 ASN154 GLY155 THR156 TYR157 ASP158 TYR159 PRO160
Unit 3 ASP1 THR2 ILE3 CYS4 ILE5 GLY6 TYR7 HIS8 ALA9 ASN10 ASN11 SER12 THR13 ASP14 THR15 VAL16 ASP17 THR18 VAL19 LEU20 GLU21 LYS22 ASN23 VAL24 THR25 VAL26 THR27 HIS28 SER29 VAL30 ASN31 LEU32 LEU33 GLU34 ASP35 SER36 HIS37 ASN38 GLY39 LYS40 LEU41 CYS42 LEU43 LEU44 LYS45 GLY46 ILE47 ALA48 PRO49 LEU50 GLN51 LEU52 GLY53 ASN54 CYS55 SER56 VAL57 ALA58 GLY59 TRP60 ILE61 LEU62 GLY63 ASN64 PRO65 GLU66 CYS67 GLU68 LEU69 LEU70 ILE71 SER72 LYS73 GLU74 SER75 TRP76 SER77 TYR78 ILE79 VAL80 GLU81 LYS82 PRO83 ASN84 PRO85 GLU86 ASN87 GLY88 THR89 CYS90 TYR91 PRO92 GLY93 HIS94 PHE95 ALA96 ASP97 TYR98 GLU99 GLU100 LEU101 ARG102 GLU103 GLN104 LEU105 SER106 SER107 VAL108 SER109 SER110 PHE111 GLU112 ARG113 PHE114 GLU115 MET116 PHE117 PRO118 LYS119 GLU120 SER121 SER122 TRP123 PRO124 ASN125 HIS126 THR127 VAL128 THR129 GLY130 VAL131 SER132 ALA133 SER134 CYS135 SER136 HIS137 ASN138 GLY139 LYS140 SER141 SER142 PHE143 TYR144 LYS145 ASN146 LEU147 LEU148 TRP149 LEU150 THR151 GLY152 LYS153 ASN154 GLY155 LEU156 TYR157 PRO158 ASN159 LEU160 SER161 LYS162 SER163 TYR164 ALA165 ASN166 ASN167 LYS168 GLU169 LYS170 GLU171 VAL172 LEU173 VAL174 LEU175 TRP176 GLY177 VAL178 HIS179 HIS180 PRO181 PRO182 ASN183 ILE184 GLY185 ASP186 GLN187 ARG188 ALA189 LEU190 TYR191 HIS192 THR193 GLU194 ASN195 ALA196 TYR197 VAL198 SER199 VAL200 VAL201 SER202 SER203 HIS204 TYR205 SER206 ARG207 LYS208 PHE209 THR210 PRO211 GLU212 ILE213 ALA214 LYS215 ARG216 PRO217 LYS218 VAL219 ARG220 ASP221 GLN222 GLU223 GLY224 ARG225 ILE226 ASN227 TYR228 TYR229 TRP230 THR231 LEU232 LEU233 GLU234 PRO235 GLY236 ASP237 THR238 ILE239 ILE240 PHE241 GLU242 ALA243 ASN244 GLY245 ASN246 LEU247 ILE248 ALA249 PRO250 ARG251 TYR252 ALA253 PHE254 ALA255 LEU256 SER257 ARG258 GLY259 PHE260 GLY261 SER262 GLY263 ILE264 ILE265 ASN266 SER267 ASN268 ALA269 PRO270 MET271 ASP272 GLU273 CYS274 ASP275 ALA276 LYS277 CYS278 GLN279 THR280 PRO281 GLN282 GLY283 ALA284 ILE285 ASN286 SER287 SER288 LEU289 PRO290 PHE291 GLN292 ASN293 VAL294 HIS295 PRO296 VAL297 THR298 ILE299 GLY300 GLU301 CYS302 PRO303 LYS304 TYR305 VAL306 ARG307 SER308 ALA309 LYS310 LEU311 ARG312 MET313 VAL314 THR315 GLY316 LEU317 ARG318 ASN319 ILE320 PRO321 SER322 ILE323
Unit 4 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 GLY12 GLY13 TRP14 THR15 GLY16 MET17 VAL18 ASP19 GLY20 TRP21 TYR22 GLY23 TYR24 HIS25 HIS26 GLN27 ASN28 GLU29 GLN30 GLY31 SER32 GLY33 TYR34 ALA35 ALA36 ASP37 GLN38 LYS39 SER40 THR41 GLN42 ASN43 ALA44 ILE45 ASN46 GLY47 ILE48 THR49 ASN50 LYS51 VAL52 ASN53 SER54 VAL55 ILE56 GLU57 LYS58 MET59 ASN60 THR61 GLN62 PHE63 THR64 ALA65 VAL66 GLY67 LYS68 GLU69 PHE70 ASN71 LYS72 LEU73 GLU74 ARG75 ARG76 MET77 GLU78 ASN79 LEU80 ASN81 LYS82 LYS83 VAL84 ASP85 ASP86 GLY87 PHE88 ILE89 ASP90 ILE91 TRP92 THR93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 LEU101 LEU102 GLU103 ASN104 GLU105 ARG106 THR107 LEU108 ASP109 PHE110 HIS111 ASP112 SER113 ASN114 VAL115 LYS116 ASN117 LEU118 TYR119 GLU120 LYS121 VAL122 LYS123 SER124 GLN125 LEU126 LYS127 ASN128 ASN129 ALA130 LYS131 GLU132 ILE133 GLY134 ASN135 GLY136 CYS137 PHE138 GLU139 PHE140 TYR141 HIS142 LYS143 CYS144 ASN145 ASP146 GLU147 CYS148 MET149 GLU150 SER151 VAL152 LYS153 ASN154 GLY155 THR156 TYR157 ASP158 TYR159 PRO160
Unit 5 ASP1 THR2 ILE3 CYS4 ILE5 GLY6 TYR7 HIS8 ALA9 ASN10 ASN11 SER12 THR13 ASP14 THR15 VAL16 ASP17 THR18 VAL19 LEU20 GLU21 LYS22 ASN23 VAL24 THR25 VAL26 THR27 HIS28 SER29 VAL30 ASN31 LEU32 LEU33 GLU34 ASP35 SER36 HIS37 ASN38 GLY39 LYS40 LEU41 CYS42 LEU43 LEU44 LYS45 GLY46 ILE47 ALA48 PRO49 LEU50 GLN51 LEU52 GLY53 ASN54 CYS55 SER56 VAL57 ALA58 GLY59 TRP60 ILE61 LEU62 GLY63 ASN64 PRO65 GLU66 CYS67 GLU68 LEU69 LEU70 ILE71 SER72 LYS73 GLU74 SER75 TRP76 SER77 TYR78 ILE79 VAL80 GLU81 LYS82 PRO83 ASN84 PRO85 GLU86 ASN87 GLY88 THR89 CYS90 TYR91 PRO92 GLY93 HIS94 PHE95 ALA96 ASP97 TYR98 GLU99 GLU100 LEU101 ARG102 GLU103 GLN104 LEU105 SER106 SER107 VAL108 SER109 SER110 PHE111 GLU112 ARG113 PHE114 GLU115 MET116 PHE117 PRO118 LYS119 GLU120 SER121 SER122 TRP123 PRO124 ASN125 HIS126 THR127 VAL128 THR129 GLY130 VAL131 SER132 ALA133 SER134 CYS135 SER136 HIS137 ASN138 GLY139 LYS140 SER141 SER142 PHE143 TYR144 LYS145 ASN146 LEU147 LEU148 TRP149 LEU150 THR151 GLY152 LYS153 ASN154 GLY155 LEU156 TYR157 PRO158 ASN159 LEU160 SER161 LYS162 SER163 TYR164 ALA165 ASN166 ASN167 LYS168 GLU169 LYS170 GLU171 VAL172 LEU173 VAL174 LEU175 TRP176 GLY177 VAL178 HIS179 HIS180 PRO181 PRO182 ASN183 ILE184 GLY185 ASP186 GLN187 ARG188 ALA189 LEU190 TYR191 HIS192 THR193 GLU194 ASN195 ALA196 TYR197 VAL198 SER199 VAL200 VAL201 SER202 SER203 HIS204 TYR205 SER206 ARG207 LYS208 PHE209 THR210 PRO211 GLU212 ILE213 ALA214 LYS215 ARG216 PRO217 LYS218 VAL219 ARG220 ASP221 GLN222 GLU223 GLY224 ARG225 ILE226 ASN227 TYR228 TYR229 TRP230 THR231 LEU232 LEU233 GLU234 PRO235 GLY236 ASP237 THR238 ILE239 ILE240 PHE241 GLU242 ALA243 ASN244 GLY245 ASN246 LEU247 ILE248 ALA249 PRO250 ARG251 TYR252 ALA253 PHE254 ALA255 LEU256 SER257 ARG258 GLY259 PHE260 GLY261 SER262 GLY263 ILE264 ILE265 ASN266 SER267 ASN268 ALA269 PRO270 MET271 ASP272 GLU273 CYS274 ASP275 ALA276 LYS277 CYS278 GLN279 THR280 PRO281 GLN282 GLY283 ALA284 ILE285 ASN286 SER287 SER288 LEU289 PRO290 PHE291 GLN292 ASN293 VAL294 HIS295 PRO296 VAL297 THR298 ILE299 GLY300 GLU301 CYS302 PRO303 LYS304 TYR305 VAL306 ARG307 SER308 ALA309 LYS310 LEU311 ARG312 MET313 VAL314 THR315 GLY316 LEU317 ARG318 ASN319 ILE320 PRO321 SER322 ILE323
Unit 6 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 GLY12 GLY13 TRP14 THR15 GLY16 MET17 VAL18 ASP19 GLY20 TRP21 TYR22 GLY23 TYR24 HIS25 HIS26 GLN27 ASN28 GLU29 GLN30 GLY31 SER32 GLY33 TYR34 ALA35 ALA36 ASP37 GLN38 LYS39 SER40 THR41 GLN42 ASN43 ALA44 ILE45 ASN46 GLY47 ILE48 THR49 ASN50 LYS51 VAL52 ASN53 SER54 VAL55 ILE56 GLU57 LYS58 MET59 ASN60 THR61 GLN62 PHE63 THR64 ALA65 VAL66 GLY67 LYS68 GLU69 PHE70 ASN71 LYS72 LEU73 GLU74 ARG75 ARG76 MET77 GLU78 ASN79 LEU80 ASN81 LYS82 LYS83 VAL84 ASP85 ASP86 GLY87 PHE88 ILE89 ASP90 ILE91 TRP92 THR93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 LEU101 LEU102 GLU103 ASN104 GLU105 ARG106 THR107 LEU108 ASP109 PHE110 HIS111 ASP112 SER113 ASN114 VAL115 LYS116 ASN117 LEU118 TYR119 GLU120 LYS121 VAL122 LYS123 SER124 GLN125 LEU126 LYS127 ASN128 ASN129 ALA130 LYS131 GLU132 ILE133 GLY134 ASN135 GLY136 CYS137 PHE138 GLU139 PHE140 TYR141 HIS142 LYS143 CYS144 ASN145 ASP146 GLU147 CYS148 MET149 GLU150 SER151 VAL152 LYS153 ASN154 GLY155 THR156 TYR157 ASP158 TYR159 PRO160
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany