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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURES OF MANNONATE DEHYDRATASE FROM ESCHERICHIA STRAIN K12 COMPLEXED WITH D-MANNONATE
Keywords TIM BARREL, DEHYDRATASE, D-MANNONATE BINDING, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4EAY     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MANNONATE DEHYDRATASE  A 395 3150 0
2  Protein   MANNONATE DEHYDRATASE  B 395 3150 0
3  Protein   MANNONATE DEHYDRATASE  C 396 3148 0
4  Protein   MANNONATE DEHYDRATASE  D 395 3145 0
5  Ligand   MANNONATE DEHYDRATASE  A 3 0 15
6  Ligand   MANNONATE DEHYDRATASE  B 3 0 15
7  Ligand   MANNONATE DEHYDRATASE  C 2 0 2
8  Ligand   MANNONATE DEHYDRATASE  D 2 0 2
9 Water     795 0 795
total       2386 12593 829
Proteins
Unit 1 SER-1 HIS0 MET1 GLU2 GLN3 THR4 TRP5 ARG6 TRP7 TYR8 GLY9 PRO10 ASN11 ASP12 PRO13 VAL14 SER15 LEU16 ALA17 ASP18 VAL19 ARG20 GLN21 ALA22 GLY23 ALA24 THR25 GLY26 VAL27 VAL28 THR29 ALA30 LEU31 HIS32 HIS33 ILE34 PRO35 ASN36 GLY37 GLU38 VAL39 TRP40 SER41 VAL42 GLU43 GLU44 ILE45 LEU46 LYS47 ARG48 LYS49 ALA50 ILE51 ILE52 GLU53 ASP54 ALA55 GLY56 LEU57 VAL58 TRP59 SER60 VAL61 VAL62 GLU63 SER64 VAL65 PRO66 ILE67 HIS68 GLU69 ASP70 ILE71 LYS72 THR73 HIS74 THR75 GLY76 ASN77 TYR78 GLU79 GLN80 TRP81 ILE82 ALA83 ASN84 TYR85 GLN86 GLN87 THR88 LEU89 ARG90 ASN91 LEU92 ALA93 GLN94 CYS95 GLY96 ILE97 ARG98 THR99 VAL100 CYS101 TYR102 ASN103 PHE104 MET105 PRO106 VAL107 LEU108 ASP109 TRP110 THR111 ARG112 THR113 ASP114 LEU115 GLU116 TYR117 VAL118 LEU119 PRO120 ASP121 GLY122 SER123 LYS124 ALA125 LEU126 ARG127 PHE128 ASP129 GLN130 ILE131 GLU132 PHE133 ALA134 ALA135 PHE136 GLU137 MET138 HIS139 ILE140 LEU141 LYS142 ARG143 PRO144 GLY145 ALA146 GLU147 ALA148 ASP149 TYR150 THR151 GLU152 GLU153 GLU154 ILE155 ALA156 GLN157 ALA158 ALA159 GLU160 ARG161 PHE162 ALA163 THR164 MET165 SER166 ASP167 GLU168 ASP169 LYS170 ALA171 ARG172 LEU173 THR174 ARG175 ASN176 ILE177 ILE178 ALA179 GLY180 LEU181 PRO182 GLY183 ALA184 GLU185 GLU186 GLY187 TYR188 THR189 LEU190 ASP191 GLN192 PHE193 ARG194 LYS195 HIS196 LEU197 GLU198 LEU199 TYR200 LYS201 ASP202 ILE203 ASP204 LYS205 ALA206 LYS207 LEU208 ARG209 GLU210 ASN211 PHE212 ALA213 VAL214 PHE215 LEU216 LYS217 ALA218 ILE219 ILE220 PRO221 VAL222 ALA223 GLU224 GLU225 VAL226 GLY227 VAL228 ARG229 MET230 ALA231 VAL232 HIS233 PRO234 ASP235 ASP236 PRO237 PRO238 ARG239 PRO240 ILE241 LEU242 GLY243 LEU244 PRO245 ARG246 ILE247 VAL248 SER249 THR250 ILE251 GLU252 ASP253 MET254 GLN255 TRP256 MET257 VAL258 ASP259 THR260 VAL261 ASN262 SER263 MET264 ALA265 ASN266 GLY267 PHE268 THR269 MET270 CYS271 THR272 GLY273 SER274 TYR275 GLY276 VAL277 ARG278 ALA279 ASP280 ASN281 ASP282 LEU283 VAL284 ASP285 MET286 ILE287 LYS288 GLN289 PHE290 GLY291 PRO292 ARG293 ILE294 TYR295 PHE296 THR297 HIS298 LEU299 ARG300 SER301 THR302 MET303 ARG304 GLU305 ASP306 ASN307 PRO308 LYS309 THR310 PHE311 HIS312 GLU313 ALA314 ALA315 HIS316 LEU317 ASN318 GLY319 ASP320 VAL321 ASP322 MET323 TYR324 GLU325 VAL326 VAL327 LYS328 ALA329 ILE330 VAL331 GLU332 GLU333 GLU334 HIS335 ARG336 ARG337 LYS338 ALA339 GLU340 GLY341 LYS342 GLU343 ASP344 LEU345 ILE346 PRO347 MET348 ARG349 PRO350 ASP351 HIS352 GLY353 HIS354 GLN355 MET356 LEU357 ASP358 ASP359 LEU360 LYS361 LYS362 LYS363 THR364 ASN365 PRO366 GLY367 TYR368 SER369 ALA370 ILE371 GLY372 ARG373 LEU374 LYS375 GLY376 LEU377 ALA378 GLU379 VAL380 ARG381 GLY382 VAL383 GLU384 LEU385 ALA386 ILE387 GLN388 ARG389 ALA390 PHE391 PHE392 SER393
Unit 2 SER-1 HIS0 MET1 GLU2 GLN3 THR4 TRP5 ARG6 TRP7 TYR8 GLY9 PRO10 ASN11 ASP12 PRO13 VAL14 SER15 LEU16 ALA17 ASP18 VAL19 ARG20 GLN21 ALA22 GLY23 ALA24 THR25 GLY26 VAL27 VAL28 THR29 ALA30 LEU31 HIS32 HIS33 ILE34 PRO35 ASN36 GLY37 GLU38 VAL39 TRP40 SER41 VAL42 GLU43 GLU44 ILE45 LEU46 LYS47 ARG48 LYS49 ALA50 ILE51 ILE52 GLU53 ASP54 ALA55 GLY56 LEU57 VAL58 TRP59 SER60 VAL61 VAL62 GLU63 SER64 VAL65 PRO66 ILE67 HIS68 GLU69 ASP70 ILE71 LYS72 THR73 HIS74 THR75 GLY76 ASN77 TYR78 GLU79 GLN80 TRP81 ILE82 ALA83 ASN84 TYR85 GLN86 GLN87 THR88 LEU89 ARG90 ASN91 LEU92 ALA93 GLN94 CYS95 GLY96 ILE97 ARG98 THR99 VAL100 CYS101 TYR102 ASN103 PHE104 MET105 PRO106 VAL107 LEU108 ASP109 TRP110 THR111 ARG112 THR113 ASP114 LEU115 GLU116 TYR117 VAL118 LEU119 PRO120 ASP121 GLY122 SER123 LYS124 ALA125 LEU126 ARG127 PHE128 ASP129 GLN130 ILE131 GLU132 PHE133 ALA134 ALA135 PHE136 GLU137 MET138 HIS139 ILE140 LEU141 LYS142 ARG143 PRO144 GLY145 ALA146 GLU147 ALA148 ASP149 TYR150 THR151 GLU152 GLU153 GLU154 ILE155 ALA156 GLN157 ALA158 ALA159 GLU160 ARG161 PHE162 ALA163 THR164 MET165 SER166 ASP167 GLU168 ASP169 LYS170 ALA171 ARG172 LEU173 THR174 ARG175 ASN176 ILE177 ILE178 ALA179 GLY180 LEU181 PRO182 GLY183 ALA184 GLU185 GLU186 GLY187 TYR188 THR189 LEU190 ASP191 GLN192 PHE193 ARG194 LYS195 HIS196 LEU197 GLU198 LEU199 TYR200 LYS201 ASP202 ILE203 ASP204 LYS205 ALA206 LYS207 LEU208 ARG209 GLU210 ASN211 PHE212 ALA213 VAL214 PHE215 LEU216 LYS217 ALA218 ILE219 ILE220 PRO221 VAL222 ALA223 GLU224 GLU225 VAL226 GLY227 VAL228 ARG229 MET230 ALA231 VAL232 HIS233 PRO234 ASP235 ASP236 PRO237 PRO238 ARG239 PRO240 ILE241 LEU242 GLY243 LEU244 PRO245 ARG246 ILE247 VAL248 SER249 THR250 ILE251 GLU252 ASP253 MET254 GLN255 TRP256 MET257 VAL258 ASP259 THR260 VAL261 ASN262 SER263 MET264 ALA265 ASN266 GLY267 PHE268 THR269 MET270 CYS271 THR272 GLY273 SER274 TYR275 GLY276 VAL277 ARG278 ALA279 ASP280 ASN281 ASP282 LEU283 VAL284 ASP285 MET286 ILE287 LYS288 GLN289 PHE290 GLY291 PRO292 ARG293 ILE294 TYR295 PHE296 THR297 HIS298 LEU299 ARG300 SER301 THR302 MET303 ARG304 GLU305 ASP306 ASN307 PRO308 LYS309 THR310 PHE311 HIS312 GLU313 ALA314 ALA315 HIS316 LEU317 ASN318 GLY319 ASP320 VAL321 ASP322 MET323 TYR324 GLU325 VAL326 VAL327 LYS328 ALA329 ILE330 VAL331 GLU332 GLU333 GLU334 HIS335 ARG336 ARG337 LYS338 ALA339 GLU340 GLY341 LYS342 GLU343 ASP344 LEU345 ILE346 PRO347 MET348 ARG349 PRO350 ASP351 HIS352 GLY353 HIS354 GLN355 MET356 LEU357 ASP358 ASP359 LEU360 LYS361 LYS362 LYS363 THR364 ASN365 PRO366 GLY367 TYR368 SER369 ALA370 ILE371 GLY372 ARG373 LEU374 LYS375 GLY376 LEU377 ALA378 GLU379 VAL380 ARG381 GLY382 VAL383 GLU384 LEU385 ALA386 ILE387 GLN388 ARG389 ALA390 PHE391 PHE392 SER393
Unit 3 SER-1 HIS0 MET1 GLU2 GLN3 THR4 TRP5 ARG6 TRP7 TYR8 GLY9 PRO10 ASN11 ASP12 PRO13 VAL14 SER15 LEU16 ALA17 ASP18 VAL19 ARG20 GLN21 ALA22 GLY23 ALA24 THR25 GLY26 VAL27 VAL28 THR29 ALA30 LEU31 HIS32 HIS33 ILE34 PRO35 ASN36 GLY37 GLU38 VAL39 TRP40 SER41 VAL42 GLU43 GLU44 ILE45 LEU46 LYS47 ARG48 LYS49 ALA50 ILE51 ILE52 GLU53 ASP54 ALA55 GLY56 LEU57 VAL58 TRP59 SER60 VAL61 VAL62 GLU63 SER64 VAL65 PRO66 ILE67 HIS68 GLU69 ASP70 ILE71 LYS72 THR73 HIS74 THR75 GLY76 ASN77 TYR78 GLU79 GLN80 TRP81 ILE82 ALA83 ASN84 TYR85 GLN86 GLN87 THR88 LEU89 ARG90 ASN91 LEU92 ALA93 GLN94 CYS95 GLY96 ILE97 ARG98 THR99 VAL100 CYS101 TYR102 ASN103 PHE104 MET105 PRO106 VAL107 LEU108 ASP109 TRP110 THR111 ARG112 THR113 ASP114 LEU115 GLU116 TYR117 VAL118 LEU119 PRO120 ASP121 GLY122 SER123 LYS124 ALA125 LEU126 ARG127 PHE128 ASP129 GLN130 ILE131 GLU132 PHE133 ALA134 ALA135 PHE136 GLU137 MET138 HIS139 ILE140 LEU141 LYS142 ARG143 PRO144 GLY145 ALA146 GLU147 ALA148 ASP149 TYR150 THR151 GLU152 GLU153 GLU154 ILE155 ALA156 GLN157 ALA158 ALA159 GLU160 ARG161 PHE162 ALA163 THR164 MET165 SER166 ASP167 GLU168 ASP169 LYS170 ALA171 ARG172 LEU173 THR174 ARG175 ASN176 ILE177 ILE178 ALA179 GLY180 LEU181 PRO182 GLY183 ALA184 GLU185 GLU186 GLY187 TYR188 THR189 LEU190 ASP191 GLN192 PHE193 ARG194 LYS195 HIS196 LEU197 GLU198 LEU199 TYR200 LYS201 ASP202 ILE203 ASP204 LYS205 ALA206 LYS207 LEU208 ARG209 GLU210 ASN211 PHE212 ALA213 VAL214 PHE215 LEU216 LYS217 ALA218 ILE219 ILE220 PRO221 VAL222 ALA223 GLU224 GLU225 VAL226 GLY227 VAL228 ARG229 MET230 ALA231 VAL232 HIS233 PRO234 ASP235 ASP236 PRO237 PRO238 ARG239 PRO240 ILE241 LEU242 GLY243 LEU244 PRO245 ARG246 ILE247 VAL248 SER249 THR250 ILE251 GLU252 ASP253 MET254 GLN255 TRP256 MET257 VAL258 ASP259 THR260 VAL261 ASN262 SER263 MET264 ALA265 ASN266 GLY267 PHE268 THR269 MET270 CYS271 THR272 GLY273 SER274 TYR275 GLY276 VAL277 ARG278 ALA279 ASP280 ASN281 ASP282 LEU283 VAL284 ASP285 MET286 ILE287 LYS288 GLN289 PHE290 GLY291 PRO292 ARG293 ILE294 TYR295 PHE296 THR297 HIS298 LEU299 ARG300 SER301 THR302 MET303 ARG304 GLU305 ASP306 ASN307 PRO308 LYS309 THR310 PHE311 HIS312 GLU313 ALA314 ALA315 HIS316 LEU317 ASN318 GLY319 ASP320 VAL321 ASP322 MET323 TYR324 GLU325 VAL326 VAL327 LYS328 ALA329 ILE330 VAL331 GLU332 GLU333 GLU334 HIS335 ARG336 ARG337 LYS338 ALA339 GLU340 GLY341 LYS342 GLU343 ASP344 LEU345 ILE346 PRO347 MET348 ARG349 PRO350 ASP351 HIS352 GLY353 HIS354 GLN355 MET356 LEU357 ASP358 ASP359 LEU360 LYS361 LYS362 LYS363 THR364 ASN365 PRO366 GLY367 TYR368 SER369 ALA370 ILE371 GLY372 ARG373 LEU374 LYS375 GLY376 LEU377 ALA378 GLU379 VAL380 ARG381 GLY382 VAL383 GLU384 LEU385 ALA386 ILE387 GLN388 ARG389 ALA390 PHE391 PHE392 SER393 ARG394
Unit 4 SER-1 HIS0 MET1 GLU2 GLN3 THR4 TRP5 ARG6 TRP7 TYR8 GLY9 PRO10 ASN11 ASP12 PRO13 VAL14 SER15 LEU16 ALA17 ASP18 VAL19 ARG20 GLN21 ALA22 GLY23 ALA24 THR25 GLY26 VAL27 VAL28 THR29 ALA30 LEU31 HIS32 HIS33 ILE34 PRO35 ASN36 GLY37 GLU38 VAL39 TRP40 SER41 VAL42 GLU43 GLU44 ILE45 LEU46 LYS47 ARG48 LYS49 ALA50 ILE51 ILE52 GLU53 ASP54 ALA55 GLY56 LEU57 VAL58 TRP59 SER60 VAL61 VAL62 GLU63 SER64 VAL65 PRO66 ILE67 HIS68 GLU69 ASP70 ILE71 LYS72 THR73 HIS74 THR75 GLY76 ASN77 TYR78 GLU79 GLN80 TRP81 ILE82 ALA83 ASN84 TYR85 GLN86 GLN87 THR88 LEU89 ARG90 ASN91 LEU92 ALA93 GLN94 CYS95 GLY96 ILE97 ARG98 THR99 VAL100 CYS101 TYR102 ASN103 PHE104 MET105 PRO106 VAL107 LEU108 ASP109 TRP110 THR111 ARG112 THR113 ASP114 LEU115 GLU116 TYR117 VAL118 LEU119 PRO120 ASP121 GLY122 SER123 LYS124 ALA125 LEU126 ARG127 PHE128 ASP129 GLN130 ILE131 GLU132 PHE133 ALA134 ALA135 PHE136 GLU137 MET138 HIS139 ILE140 LEU141 LYS142 ARG143 PRO144 GLY145 ALA146 GLU147 ALA148 ASP149 TYR150 THR151 GLU152 GLU153 GLU154 ILE155 ALA156 GLN157 ALA158 ALA159 GLU160 ARG161 PHE162 ALA163 THR164 MET165 SER166 ASP167 GLU168 ASP169 LYS170 ALA171 ARG172 LEU173 THR174 ARG175 ASN176 ILE177 ILE178 ALA179 GLY180 LEU181 PRO182 GLY183 ALA184 GLU185 GLU186 GLY187 TYR188 THR189 LEU190 ASP191 GLN192 PHE193 ARG194 LYS195 HIS196 LEU197 GLU198 LEU199 TYR200 LYS201 ASP202 ILE203 ASP204 LYS205 ALA206 LYS207 LEU208 ARG209 GLU210 ASN211 PHE212 ALA213 VAL214 PHE215 LEU216 LYS217 ALA218 ILE219 ILE220 PRO221 VAL222 ALA223 GLU224 GLU225 VAL226 GLY227 VAL228 ARG229 MET230 ALA231 VAL232 HIS233 PRO234 ASP235 ASP236 PRO237 PRO238 ARG239 PRO240 ILE241 LEU242 GLY243 LEU244 PRO245 ARG246 ILE247 VAL248 SER249 THR250 ILE251 GLU252 ASP253 MET254 GLN255 TRP256 MET257 VAL258 ASP259 THR260 VAL261 ASN262 SER263 MET264 ALA265 ASN266 GLY267 PHE268 THR269 MET270 CYS271 THR272 GLY273 SER274 TYR275 GLY276 VAL277 ARG278 ALA279 ASP280 ASN281 ASP282 LEU283 VAL284 ASP285 MET286 ILE287 LYS288 GLN289 PHE290 GLY291 PRO292 ARG293 ILE294 TYR295 PHE296 THR297 HIS298 LEU299 ARG300 SER301 THR302 MET303 ARG304 GLU305 ASP306 ASN307 PRO308 LYS309 THR310 PHE311 HIS312 GLU313 ALA314 ALA315 HIS316 LEU317 ASN318 GLY319 ASP320 VAL321 ASP322 MET323 TYR324 GLU325 VAL326 VAL327 LYS328 ALA329 ILE330 VAL331 GLU332 GLU333 GLU334 HIS335 ARG336 ARG337 LYS338 ALA339 GLU340 GLY341 LYS342 GLU343 ASP344 LEU345 ILE346 PRO347 MET348 ARG349 PRO350 ASP351 HIS352 GLY353 HIS354 GLN355 MET356 LEU357 ASP358 ASP359 LEU360 LYS361 LYS362 LYS363 THR364 ASN365 PRO366 GLY367 TYR368 SER369 ALA370 ILE371 GLY372 ARG373 LEU374 LYS375 GLY376 LEU377 ALA378 GLU379 VAL380 ARG381 GLY382 VAL383 GLU384 LEU385 ALA386 ILE387 GLN388 ARG389 ALA390 PHE391 PHE392 SER393
Ligands
Unit 5 CL401 CS2402 MN403
Unit 6 CL401 CS2402 MN403
Unit 7 CL401 MN402
Unit 8 CL401 MN402
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany