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Sequence, Chains, Asymmetric and Biological Units

Title THROMBIN IN COMPLEX WITH 3-AMIDINOPHENYLALANINE INHIBITOR
Keywords HYDROLASE-HYDROLASE INHIBITOR COMPLEX, SERINE PROTEASE, KRIN HYDROLASE, BLOOD COAGULATION, BLOOD CLOTTING, CONVERTION OF FIBRINOGEN TO FIBRIN, BLOOD CLOTTING INHIBITOR, THROMBIN IN GLYCOSYLATION, BLOOD
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4E7R     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   THROMBIN LIGHT CHAIN  L 28 217 0
2  Protein   THROMBIN LIGHT CHAIN  M 28 217 0
3  Protein   THROMBIN HEAVY CHAIN  H 250 1999 0
4  Protein   THROMBIN HEAVY CHAIN  G 250 1987 0
5  Protein   HIRUDIN VARIANT-2  I 11 75 16
6  Protein   HIRUDIN VARIANT-2  J 11 72 16
7  Ligand   THROMBIN HEAVY CHAIN  H 7 0 73
8  Ligand   THROMBIN HEAVY CHAIN  G 6 0 67
9 Water     265 0 265
total       856 4567 437

Proteins
Unit 1 CYS1 ASP1A ALA1B GLU1C GLY2 LEU3 ARG4 PRO5 LEU6 PHE7 GLU8 LYS9 LYS10 SER11 LEU12 GLU13 ASP14 LYS14A THR14B GLU14C ARG14D GLU14E LEU14F LEU14G GLU14H SER14I TYR14J ILE14K
Unit 2 CYS1001 ASP1001A ALA1001B GLU1001C GLY1002 LEU1003 ARG1004 PRO1005 LEU1006 PHE1007 GLU1008 LYS1009 LYS1010 SER1011 LEU1012 GLU1013 ASP1014 LYS1014A THR1014B GLU1014C ARG1014D GLU1014E LEU1014F LEU1014G GLU1014H SER1014I TYR1014J ILE1014K
Unit 3 ILE16 VAL17 GLU18 GLY19 SER20 ASP21 ALA22 GLU23 ILE24 GLY25 MET26 SER27 PRO28 TRP29 GLN30 VAL31 MET32 LEU33 PHE34 ARG35 LYS36 SER36A PRO37 GLN38 GLU39 LEU40 LEU41 CYS42 GLY43 ALA44 SER45 LEU46 ILE47 SER48 ASP49 ARG50 TRP51 VAL52 LEU53 THR54 ALA55 ALA56 HIS57 CYS58 LEU59 LEU60 TYR60A PRO60B PRO60C TRP60D ASP60E LYS60F ASN60G PHE60H THR60I GLU61 ASN62 ASP63 LEU64 LEU65 VAL66 ARG67 ILE68 GLY69 LYS70 HIS71 SER72 ARG73 THR74 ARG75 TYR76 GLU77 ARG77A ASN78 ILE79 GLU80 LYS81 ILE82 SER83 MET84 LEU85 GLU86 LYS87 ILE88 TYR89 ILE90 HIS91 PRO92 ARG93 TYR94 ASN95 TRP96 ARG97 GLU97A ASN98 LEU99 ASP100 ARG101 ASP102 ILE103 ALA104 LEU105 MET106 LYS107 LEU108 LYS109 LYS110 PRO111 VAL112 ALA113 PHE114 SER115 ASP116 TYR117 ILE118 HIS119 PRO120 VAL121 CYS122 LEU123 PRO124 ASP125 ARG126 GLU127 THR128 ALA129 ALA129A SER129B LEU129C LEU130 GLN131 ALA132 GLY133 TYR134 LYS135 GLY136 ARG137 VAL138 THR139 GLY140 TRP141 GLY142 ASN143 LEU144 LYS145 GLU146 GLY150 GLN151 PRO152 SER153 VAL154 LEU155 GLN156 VAL157 VAL158 ASN159 LEU160 PRO161 ILE162 VAL163 GLU164 ARG165 PRO166 VAL167 CYS168 LYS169 ASP170 SER171 THR172 ARG173 ILE174 ARG175 ILE176 THR177 ASP178 ASN179 MET180 PHE181 CYS182 ALA183 GLY184 TYR184A LYS185 PRO186 ASP186A GLU186B GLY186C LYS186D ARG187 GLY188 ASP189 ALA190 CYS191 GLU192 GLY193 ASP194 SER195 GLY196 GLY197 PRO198 PHE199 VAL200 MET201 LYS202 SER203 PRO204 PHE204A ASN204B ASN205 ARG206 TRP207 TYR208 GLN209 MET210 GLY211 ILE212 VAL213 SER214 TRP215 GLY216 GLU217 GLY219 CYS220 ASP221 ARG221A ASP222 GLY223 LYS224 TYR225 GLY226 PHE227 TYR228 THR229 HIS230 VAL231 PHE232 ARG233 LEU234 LYS235 LYS236 TRP237 ILE238 GLN239 LYS240 VAL241 ILE242 ASP243 GLN244 PHE245 GLY246
Unit 4 ILE1016 VAL1017 GLU1018 GLY1019 SER1020 ASP1021 ALA1022 GLU1023 ILE1024 GLY1025 MET1026 SER1027 PRO1028 TRP1029 GLN1030 VAL1031 MET1032 LEU1033 PHE1034 ARG1035 LYS1036 SER1036A PRO1037 GLN1038 GLU1039 LEU1040 LEU1041 CYS1042 GLY1043 ALA1044 SER1045 LEU1046 ILE1047 SER1048 ASP1049 ARG1050 TRP1051 VAL1052 LEU1053 THR1054 ALA1055 ALA1056 HIS1057 CYS1058 LEU1059 LEU1060 TYR1060A PRO1060B PRO1060C TRP1060D ASP1060E LYS1060F ASN1060G PHE1060H THR1060I GLU1061 ASN1062 ASP1063 LEU1064 LEU1065 VAL1066 ARG1067 ILE1068 GLY1069 LYS1070 HIS1071 SER1072 ARG1073 THR1074 ARG1075 TYR1076 GLU1077 ARG1077A ASN1078 ILE1079 GLU1080 LYS1081 ILE1082 SER1083 MET1084 LEU1085 GLU1086 LYS1087 ILE1088 TYR1089 ILE1090 HIS1091 PRO1092 ARG1093 TYR1094 ASN1095 TRP1096 ARG1097 GLU1097A ASN1098 LEU1099 ASP1100 ARG1101 ASP1102 ILE1103 ALA1104 LEU1105 MET1106 LYS1107 LEU1108 LYS1109 LYS1110 PRO1111 VAL1112 ALA1113 PHE1114 SER1115 ASP1116 TYR1117 ILE1118 HIS1119 PRO1120 VAL1121 CYS1122 LEU1123 PRO1124 ASP1125 ARG1126 GLU1127 THR1128 ALA1129 ALA1129A SER1129B LEU1129C LEU1130 GLN1131 ALA1132 GLY1133 TYR1134 LYS1135 GLY1136 ARG1137 VAL1138 THR1139 GLY1140 TRP1141 GLY1142 ASN1143 LEU1144 LYS1145 GLU1146 THR1147 GLY1150 GLN1151 PRO1152 SER1153 VAL1154 LEU1155 GLN1156 VAL1157 VAL1158 ASN1159 LEU1160 PRO1161 ILE1162 VAL1163 GLU1164 ARG1165 PRO1166 VAL1167 CYS1168 LYS1169 ASP1170 SER1171 THR1172 ARG1173 ILE1174 ARG1175 ILE1176 THR1177 ASP1178 ASN1179 MET1180 PHE1181 CYS1182 ALA1183 GLY1184 TYR1184A LYS1185 PRO1186 ASP1186A GLU1186B GLY1186C LYS1186D ARG1187 GLY1188 ASP1189 ALA1190 CYS1191 GLU1192 GLY1193 ASP1194 SER1195 GLY1196 GLY1197 PRO1198 PHE1199 VAL1200 MET1201 LYS1202 SER1203 PRO1204 PHE1204A ASN1204B ASN1205 ARG1206 TRP1207 TYR1208 GLN1209 MET1210 GLY1211 ILE1212 VAL1213 SER1214 TRP1215 GLY1216 GLU1217 GLY1219 CYS1220 ASP1221 ARG1221A ASP1222 GLY1223 LYS1224 TYR1225 GLY1226 PHE1227 TYR1228 THR1229 HIS1230 VAL1231 PHE1232 ARG1233 LEU1234 LYS1235 LYS1236 TRP1237 ILE1238 GLN1239 LYS1240 VAL1241 ILE1242 ASP1243 GLN1244 PHE1245
Unit 5 ASP555 PHE556 GLU557 GLU558 ILE559 PRO560 GLU561 GLU562 TYS563 LEU564 GLN565
Unit 6 ASP1555 PHE1556 GLU1557 GLU1558 ILE1559 PRO1560 GLU1561 GLU1562 TYS1563 LEU1564 GLN1565

Ligands
Unit 7 NAG301 0NW302 NA303 NA304 PO4305 GOL306 GOL307
Unit 8 NAG1301 0NW1302 NA1303 NA1304 PO41305 GOL1306

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany