4E6N - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF BACTERIAL PNKP-C/HEN1-N HETERODIMER
• Keywords: RNA REPAIR, RNA LIGASE, LIGASE-ACTIVATING, PROTEIN BINDING, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4E6N	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	METALLOPHOSPHOESTERASE	A	407	3268	0
2	Protein	METHYLTRANSFERASE TYPE 12	B	218	1759	0
3	Protein	METALLOPHOSPHOESTERASE	C	407	3268	0
4	Protein	METHYLTRANSFERASE TYPE 12	D	218	1759	0
5	Ligand	METALLOPHOSPHOESTERASE	A	2	0	23
6	Ligand	METALLOPHOSPHOESTERASE	C	2	0	23
7	Water			430	0	430
total				1684	10054	476

Proteins

Unit 1	GLY 453 LYS 454 LYS 455 ILE 456 ILE 457 THR 458 THR 459 ARG 460 LEU 461 MET 462 SER 463 SER 464 ILE 465 THR 466 ILE 467 HIS 468 GLU 469 GLU 470 ASN 471 SER 472 ILE 473 ALA 474 ALA 475 LEU 476 GLU 477 VAL 478 MET 479 SER 480 ARG 481 PHE 482 ALA 483 ALA 484 ASP 485 PRO 486 HIS 487 TRP 488 LEU 489 ILE 490 TYR 491 LEU 492 PRO 493 PRO 494 THR 495 MET 496 SER 497 PRO 498 CYS 499 GLU 500 THR 501 SER 502 LYS 503 LYS 504 GLU 505 GLY 506 MET 507 LEU 508 GLU 509 HIS 510 PRO 511 ILE 512 GLU 513 ALA 514 PHE 515 GLU 516 TYR 517 PHE 518 ARG 519 THR 520 ARG 521 GLY 522 VAL 523 GLY 524 LYS 525 VAL 526 VAL 527 CYS 528 GLU 529 GLN 530 LYS 531 HIS 532 MET 533 GLY 534 SER 535 ARG 536 ALA 537 VAL 538 VAL 539 ILE 540 VAL 541 CYS 542 LYS 543 ASP 544 SER 545 GLN 546 VAL 547 ALA 548 GLU 549 LYS 550 ARG 551 PHE 552 GLY 553 VAL 554 LEU 555 ASP 556 GLY 557 THR 558 ALA 559 GLY 560 ILE 561 CYS 562 TYR 563 THR 564 ARG 565 THR 566 GLY 567 ARG 568 HIS 569 PHE 570 PHE 571 ASP 572 ASP 573 MET 574 GLN 575 LEU 576 GLU 577 ALA 578 GLU 579 LEU 580 ILE 581 ASP 582 ARG 583 VAL 584 ARG 585 LYS 586 VAL 587 LEU 588 ASP 589 LYS 590 SER 591 GLY 592 PHE 593 TRP 594 GLY 595 ASP 596 PHE 597 ASN 598 THR 599 ASP 600 TRP 601 VAL 602 CYS 603 LEU 604 ASP 605 CYS 606 GLU 607 LEU 608 MET 609 PRO 610 TRP 611 SER 612 ALA 613 LYS 614 ALA 615 GLN 616 LYS 617 LEU 618 LEU 619 GLU 620 GLU 621 GLN 622 TYR 623 SER 624 ALA 625 VAL 626 GLY 627 ILE 628 SER 629 GLY 630 ARG 631 VAL 632 VAL 633 LEU 634 ASP 635 GLU 636 ALA 637 VAL 638 LYS 639 LEU 640 LEU 641 LYS 642 GLN 643 ALA 644 SER 645 LEU 646 ASN 647 LYS 648 GLY 660 LYS 661 ASN 662 ALA 663 ASP 664 ILE 665 ASN 666 GLU 667 LEU 668 LEU 669 GLN 670 ARG 671 PHE 672 THR 673 GLU 674 ARG 675 SER 676 GLU 677 MET 678 MET 679 GLN 680 LYS 681 TYR 682 VAL 683 GLU 684 ALA 685 TYR 686 ARG 687 LYS 688 TYR 689 CYS 690 TRP 691 PRO 692 VAL 693 ASN 694 SER 695 ILE 696 ASP 697 ASP 698 LEU 699 LYS 700 LEU 701 ALA 702 PRO 703 PHE 704 HIS 705 ILE 706 LEU 707 ALA 708 THR 709 GLU 710 GLY 711 LYS 712 VAL 713 HIS 714 SER 715 ASP 716 LYS 717 ASN 718 HIS 719 ILE 720 TRP 721 HIS 722 MET 723 ASP 724 THR 725 ILE 726 ALA 727 LYS 728 TYR 729 CYS 730 THR 731 GLN 732 ASP 733 ASP 734 SER 735 LEU 736 ILE 737 MET 738 ALA 739 THR 740 ASN 741 HIS 742 ILE 743 LEU 744 VAL 745 ASP 746 VAL 747 THR 748 ASP 749 ALA 750 GLU 751 SER 752 VAL 753 ASP 754 LYS 755 GLY 756 ILE 757 LYS 758 TRP 759 TRP 760 GLU 761 ASP 762 LEU 763 THR 764 ALA 765 SER 766 GLY 767 GLY 768 GLU 769 GLY 770 MET 771 VAL 772 VAL 773 LYS 774 PRO 775 TYR 776 ASP 777 PHE 778 ILE 779 VAL 780 LYS 781 ASN 782 GLY 783 ARG 784 GLU 785 LEU 786 LEU 787 GLN 788 PRO 789 ALA 790 VAL 791 LYS 792 CYS 793 ARG 794 GLY 795 ARG 796 GLU 797 TYR 798 LEU 799 ARG 800 ILE 801 ILE 802 TYR 803 GLY 804 PRO 805 GLU 806 TYR 807 THR 808 MET 809 ASP 810 GLU 811 ASN 812 ILE 813 GLU 814 ARG 815 LEU 816 ARG 817 ASN 818 ARG 819 ALA 820 VAL 821 GLY 822 LYS 823 LYS 824 ARG 825 SER 826 LEU 827 ALA 828 LEU 829 ARG 830 GLU 831 PHE 832 SER 833 LEU 834 GLY 835 MET 836 GLU 837 ALA 838 LEU 839 GLU 840 ARG 841 PHE 842 VAL 843 ARG 844 ASN 845 GLU 846 PRO 847 LEU 848 TYR 849 ARG 850 VAL 851 HIS 852 GLU 853 CYS 854 VAL 855 PHE 856 GLY 857 VAL 858 LEU 859 ALA 860 LEU 861 GLU 862 SER 863 GLU 864 PRO 865 VAL 866 ASP 867 PRO 868 ARG 869 LEU 870
Unit 2	MET 1 ILE 2 LEU 3 THR 4 ILE 5 THR 6 TYR 7 THR 8 GLN 9 PRO 10 PRO 11 ALA 12 THR 13 ASP 14 LEU 15 GLY 16 TYR 17 LEU 18 LEU 19 HIS 20 LYS 21 ASN 22 PRO 23 SER 24 ARG 25 PRO 26 GLN 27 THR 28 PHE 29 GLU 30 LEU 31 ASN 32 HIS 33 GLY 34 LYS 35 ALA 36 HIS 37 ILE 38 PHE 39 TYR 40 PRO 41 GLU 42 ALA 43 THR 44 SER 45 GLU 46 ARG 47 CYS 48 THR 49 VAL 50 ALA 51 LEU 52 LEU 53 LEU 54 ASP 55 ILE 56 ASP 57 PRO 58 ILE 59 ASP 60 LEU 61 ALA 62 ARG 63 GLY 64 GLY 73 LEU 74 PHE 75 ASP 76 TYR 77 VAL 78 ASN 79 ASP 80 ARG 81 PRO 82 TYR 83 VAL 84 SER 85 SER 86 SER 87 PHE 88 MET 89 SER 90 VAL 91 ALA 92 ILE 93 SER 94 ARG 95 VAL 96 PHE 97 GLY 98 THR 99 ALA 100 MET 101 SER 102 GLY 103 LYS 104 CYS 105 LYS 106 GLU 107 LYS 108 PRO 109 GLU 110 LEU 111 ALA 112 ALA 113 ILE 114 LYS 115 LEU 116 PRO 117 LEU 118 LYS 119 ALA 120 LYS 121 ILE 122 MET 123 MET 124 LEU 125 PRO 126 CYS 127 LYS 128 GLY 129 GLY 130 GLU 131 GLU 132 ILE 133 ILE 134 TYR 135 ARG 136 LEU 137 PHE 138 GLU 139 PRO 140 LEU 141 GLY 142 TYR 143 LYS 144 VAL 145 ASP 146 VAL 147 GLU 148 GLY 149 TYR 150 MET 151 LEU 152 ASP 153 GLU 154 LYS 155 PHE 156 PRO 157 GLU 158 TRP 159 GLY 160 LYS 161 SER 162 ARG 163 TYR 164 TYR 165 THR 166 VAL 167 SER 168 LEU 169 GLU 170 GLY 171 GLU 172 VAL 173 ARG 174 VAL 175 ARG 176 ASP 177 LEU 178 LEU 179 ASN 180 HIS 181 ILE 182 TYR 183 VAL 184 LEU 185 ILE 186 PRO 187 VAL 188 LEU 189 ASP 190 SER 191 GLU 192 LYS 193 HIS 194 TYR 195 TRP 196 VAL 197 GLY 198 GLU 199 ASP 200 GLU 201 ILE 202 ASP 203 LYS 204 LEU 205 PHE 206 GLN 207 HIS 208 GLY 209 GLU 210 GLY 211 TRP 212 LEU 213 VAL 214 ASP 215 HIS 216 PRO 217 GLU 218 LYS 219 GLU 220 LEU 221 ILE 222 THR 223 GLY 224 ARG 225 TYR 226
Unit 3	GLY 453 LYS 454 LYS 455 ILE 456 ILE 457 THR 458 THR 459 ARG 460 LEU 461 MET 462 SER 463 SER 464 ILE 465 THR 466 ILE 467 HIS 468 GLU 469 GLU 470 ASN 471 SER 472 ILE 473 ALA 474 ALA 475 LEU 476 GLU 477 VAL 478 MET 479 SER 480 ARG 481 PHE 482 ALA 483 ALA 484 ASP 485 PRO 486 HIS 487 TRP 488 LEU 489 ILE 490 TYR 491 LEU 492 PRO 493 PRO 494 THR 495 MET 496 SER 497 PRO 498 CYS 499 GLU 500 THR 501 SER 502 LYS 503 LYS 504 GLU 505 GLY 506 MET 507 LEU 508 GLU 509 HIS 510 PRO 511 ILE 512 GLU 513 ALA 514 PHE 515 GLU 516 TYR 517 PHE 518 ARG 519 THR 520 ARG 521 GLY 522 VAL 523 GLY 524 LYS 525 VAL 526 VAL 527 CYS 528 GLU 529 GLN 530 LYS 531 HIS 532 MET 533 GLY 534 SER 535 ARG 536 ALA 537 VAL 538 VAL 539 ILE 540 VAL 541 CYS 542 LYS 543 ASP 544 SER 545 GLN 546 VAL 547 ALA 548 GLU 549 LYS 550 ARG 551 PHE 552 GLY 553 VAL 554 LEU 555 ASP 556 GLY 557 THR 558 ALA 559 GLY 560 ILE 561 CYS 562 TYR 563 THR 564 ARG 565 THR 566 GLY 567 ARG 568 HIS 569 PHE 570 PHE 571 ASP 572 ASP 573 MET 574 GLN 575 LEU 576 GLU 577 ALA 578 GLU 579 LEU 580 ILE 581 ASP 582 ARG 583 VAL 584 ARG 585 LYS 586 VAL 587 LEU 588 ASP 589 LYS 590 SER 591 GLY 592 PHE 593 TRP 594 GLY 595 ASP 596 PHE 597 ASN 598 THR 599 ASP 600 TRP 601 VAL 602 CYS 603 LEU 604 ASP 605 CYS 606 GLU 607 LEU 608 MET 609 PRO 610 TRP 611 SER 612 ALA 613 LYS 614 ALA 615 GLN 616 LYS 617 LEU 618 LEU 619 GLU 620 GLU 621 GLN 622 TYR 623 SER 624 ALA 625 VAL 626 GLY 627 ILE 628 SER 629 GLY 630 ARG 631 VAL 632 VAL 633 LEU 634 ASP 635 GLU 636 ALA 637 VAL 638 LYS 639 LEU 640 LEU 641 LYS 642 GLN 643 ALA 644 SER 645 LEU 646 ASN 647 LYS 648 GLY 660 LYS 661 ASN 662 ALA 663 ASP 664 ILE 665 ASN 666 GLU 667 LEU 668 LEU 669 GLN 670 ARG 671 PHE 672 THR 673 GLU 674 ARG 675 SER 676 GLU 677 MET 678 MET 679 GLN 680 LYS 681 TYR 682 VAL 683 GLU 684 ALA 685 TYR 686 ARG 687 LYS 688 TYR 689 CYS 690 TRP 691 PRO 692 VAL 693 ASN 694 SER 695 ILE 696 ASP 697 ASP 698 LEU 699 LYS 700 LEU 701 ALA 702 PRO 703 PHE 704 HIS 705 ILE 706 LEU 707 ALA 708 THR 709 GLU 710 GLY 711 LYS 712 VAL 713 HIS 714 SER 715 ASP 716 LYS 717 ASN 718 HIS 719 ILE 720 TRP 721 HIS 722 MET 723 ASP 724 THR 725 ILE 726 ALA 727 LYS 728 TYR 729 CYS 730 THR 731 GLN 732 ASP 733 ASP 734 SER 735 LEU 736 ILE 737 MET 738 ALA 739 THR 740 ASN 741 HIS 742 ILE 743 LEU 744 VAL 745 ASP 746 VAL 747 THR 748 ASP 749 ALA 750 GLU 751 SER 752 VAL 753 ASP 754 LYS 755 GLY 756 ILE 757 LYS 758 TRP 759 TRP 760 GLU 761 ASP 762 LEU 763 THR 764 ALA 765 SER 766 GLY 767 GLY 768 GLU 769 GLY 770 MET 771 VAL 772 VAL 773 LYS 774 PRO 775 TYR 776 ASP 777 PHE 778 ILE 779 VAL 780 LYS 781 ASN 782 GLY 783 ARG 784 GLU 785 LEU 786 LEU 787 GLN 788 PRO 789 ALA 790 VAL 791 LYS 792 CYS 793 ARG 794 GLY 795 ARG 796 GLU 797 TYR 798 LEU 799 ARG 800 ILE 801 ILE 802 TYR 803 GLY 804 PRO 805 GLU 806 TYR 807 THR 808 MET 809 ASP 810 GLU 811 ASN 812 ILE 813 GLU 814 ARG 815 LEU 816 ARG 817 ASN 818 ARG 819 ALA 820 VAL 821 GLY 822 LYS 823 LYS 824 ARG 825 SER 826 LEU 827 ALA 828 LEU 829 ARG 830 GLU 831 PHE 832 SER 833 LEU 834 GLY 835 MET 836 GLU 837 ALA 838 LEU 839 GLU 840 ARG 841 PHE 842 VAL 843 ARG 844 ASN 845 GLU 846 PRO 847 LEU 848 TYR 849 ARG 850 VAL 851 HIS 852 GLU 853 CYS 854 VAL 855 PHE 856 GLY 857 VAL 858 LEU 859 ALA 860 LEU 861 GLU 862 SER 863 GLU 864 PRO 865 VAL 866 ASP 867 PRO 868 ARG 869 LEU 870
Unit 4	MET 1 ILE 2 LEU 3 THR 4 ILE 5 THR 6 TYR 7 THR 8 GLN 9 PRO 10 PRO 11 ALA 12 THR 13 ASP 14 LEU 15 GLY 16 TYR 17 LEU 18 LEU 19 HIS 20 LYS 21 ASN 22 PRO 23 SER 24 ARG 25 PRO 26 GLN 27 THR 28 PHE 29 GLU 30 LEU 31 ASN 32 HIS 33 GLY 34 LYS 35 ALA 36 HIS 37 ILE 38 PHE 39 TYR 40 PRO 41 GLU 42 ALA 43 THR 44 SER 45 GLU 46 ARG 47 CYS 48 THR 49 VAL 50 ALA 51 LEU 52 LEU 53 LEU 54 ASP 55 ILE 56 ASP 57 PRO 58 ILE 59 ASP 60 LEU 61 ALA 62 ARG 63 GLY 64 GLY 73 LEU 74 PHE 75 ASP 76 TYR 77 VAL 78 ASN 79 ASP 80 ARG 81 PRO 82 TYR 83 VAL 84 SER 85 SER 86 SER 87 PHE 88 MET 89 SER 90 VAL 91 ALA 92 ILE 93 SER 94 ARG 95 VAL 96 PHE 97 GLY 98 THR 99 ALA 100 MET 101 SER 102 GLY 103 LYS 104 CYS 105 LYS 106 GLU 107 LYS 108 PRO 109 GLU 110 LEU 111 ALA 112 ALA 113 ILE 114 LYS 115 LEU 116 PRO 117 LEU 118 LYS 119 ALA 120 LYS 121 ILE 122 MET 123 MET 124 LEU 125 PRO 126 CYS 127 LYS 128 GLY 129 GLY 130 GLU 131 GLU 132 ILE 133 ILE 134 TYR 135 ARG 136 LEU 137 PHE 138 GLU 139 PRO 140 LEU 141 GLY 142 TYR 143 LYS 144 VAL 145 ASP 146 VAL 147 GLU 148 GLY 149 TYR 150 MET 151 LEU 152 ASP 153 GLU 154 LYS 155 PHE 156 PRO 157 GLU 158 TRP 159 GLY 160 LYS 161 SER 162 ARG 163 TYR 164 TYR 165 THR 166 VAL 167 SER 168 LEU 169 GLU 170 GLY 171 GLU 172 VAL 173 ARG 174 VAL 175 ARG 176 ASP 177 LEU 178 LEU 179 ASN 180 HIS 181 ILE 182 TYR 183 VAL 184 LEU 185 ILE 186 PRO 187 VAL 188 LEU 189 ASP 190 SER 191 GLU 192 LYS 193 HIS 194 TYR 195 TRP 196 VAL 197 GLY 198 GLU 199 ASP 200 GLU 201 ILE 202 ASP 203 LYS 204 LEU 205 PHE 206 GLN 207 HIS 208 GLY 209 GLU 210 GLY 211 TRP 212 LEU 213 VAL 214 ASP 215 HIS 216 PRO 217 GLU 218 LYS 219 GLU 220 LEU 221 ILE 222 THR 223 GLY 224 ARG 225 TYR 226

Ligands

Unit 5	MG 901 AMP 902
Unit 6	MG 901 AMP 902