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Title | STRUCTURE OF 20MER DOUBLE-HELICAL RNA COMPOSED OF CUG/CUG-RE | |
Keywords | SIRNA, TRINUCLEOTIDE REPEAT EXPANSION, RNA | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4E48 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 20 | 422 | 0 | |
2 | RNA | B | 20 | 422 | 0 | |
3 | RNA | D | 20 | 422 | 0 | |
4 | Ligand | 5'-R(P*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP* P*GP*C)-3' | A | 4 | 0 | 12 |
5 | Ligand | 5'-R(P*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP* P*GP*C)-3' | B | 2 | 0 | 10 |
6 | Ligand | 5'-R(P*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP* P*GP*C)-3' | D | 1 | 0 | 5 |
7 | Water | 94 | 0 | 94 | ||
total | 161 | 1266 | 121 |
Unit 1 | G1 C2 U3 G4 C5 U6 G7 C8 U9 G10 C11 U12 G13 C14 U15 G16 C17 U18 G19 C20 |
Unit 2 | G21 C22 U23 G24 C25 U26 G27 C28 U29 G30 C31 U32 G33 C34 U35 G36 C37 U38 G39 C40 |
Unit 3 | G1 C2 U3 G4 C5 U6 G7 C8 U9 G10 C11 U12 G13 C14 U15 G16 C17 U18 G19 C20 |
Unit 4 | SO4101 SO4102 K103 K104 |
Unit 5 | SO4101 SO4102 |
Unit 6 | SO4101 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |