4DZ6 - Sequence, Chains, Asymmetric and Biological Units

• Title: TRANSITION STATE MIMIC OF NUCLEOSIDE-DIPHOSPHATE KINASE FROM BURGDORFERI WITH BOUND VANADATE AND ADP
• Keywords: SSGCID, NIAID, NUCLEOSIDE DIPHOSPHATE KINASE, KINASE, VANADA TRANSITION STATE MIMIC, TRANSITION STATE ANALOG, TRANSFERAS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4DZ6	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	NUCLEOSIDE DIPHOSPHATE KINASE	A	168	1351	0
2	Protein	NUCLEOSIDE DIPHOSPHATE KINASE	B	168	1347	0
3	Protein	NUCLEOSIDE DIPHOSPHATE KINASE	C	168	1351	0
4	Protein	NUCLEOSIDE DIPHOSPHATE KINASE	D	168	1351	0
5	Protein	NUCLEOSIDE DIPHOSPHATE KINASE	E	168	1338	0
6	Protein	NUCLEOSIDE DIPHOSPHATE KINASE	F	168	1327	0
7	Ligand	NUCLEOSIDE DIPHOSPHATE KINASE	A	3	0	35
8	Ligand	NUCLEOSIDE DIPHOSPHATE KINASE	B	2	0	9
9	Ligand	NUCLEOSIDE DIPHOSPHATE KINASE	C	2	0	31
10	Ligand	NUCLEOSIDE DIPHOSPHATE KINASE	D	2	0	31
11	Ligand	NUCLEOSIDE DIPHOSPHATE KINASE	E	1	0	5
12	Ligand	NUCLEOSIDE DIPHOSPHATE KINASE	F	1	0	5
13	Water			328	0	328
total				1347	8065	444

Proteins

Unit 1	SER 2 MET 3 LEU 4 LEU 5 GLN 6 LYS 7 THR 8 LEU 9 CYS 10 ILE 11 VAL 12 LYS 13 PRO 14 ASP 15 GLY 16 VAL 17 ARG 18 ARG 19 GLY 20 LEU 21 ILE 22 GLY 23 ASP 24 VAL 25 VAL 26 SER 27 ARG 28 PHE 29 GLU 30 ARG 31 VAL 32 GLY 33 LEU 34 LYS 35 MET 36 VAL 37 ALA 38 ALA 39 LYS 40 MET 41 LEU 42 ILE 43 VAL 44 ASP 45 GLU 46 SER 47 LEU 48 ALA 49 LYS 50 LYS 51 HIS 52 TYR 53 LEU 54 TYR 55 ASP 56 ASP 57 ILE 58 VAL 59 PHE 60 ARG 61 HIS 62 SER 63 GLU 64 ALA 65 VAL 66 TRP 67 ASN 68 SER 69 LEU 70 ILE 71 LYS 72 PHE 73 ILE 74 SER 75 ASN 76 SER 77 PRO 78 VAL 79 PHE 80 THR 81 PHE 82 VAL 83 VAL 84 GLU 85 GLY 86 VAL 87 GLU 88 SER 89 ILE 90 GLU 91 VAL 92 VAL 93 ARG 94 LYS 95 LEU 96 CYS 97 GLY 98 ALA 99 THR 100 GLU 101 PRO 102 LYS 103 LEU 104 ALA 105 ILE 106 PRO 107 GLY 108 THR 109 ILE 110 ARG 111 GLY 112 ASP 113 PHE 114 SER 115 TYR 116 HIS 117 SER 118 PHE 119 LYS 120 TYR 121 SER 122 ASN 123 GLU 124 LYS 125 GLY 126 PHE 127 SER 128 ILE 129 TYR 130 ASN 131 VAL 132 ILE 133 HIS 134 ALA 135 SER 136 ALA 137 ASN 138 GLU 139 ALA 140 ASP 141 ALA 142 MET 143 ARG 144 GLU 145 ILE 146 PRO 147 ILE 148 TRP 149 PHE 150 LYS 151 ASP 152 ASN 153 GLU 154 ILE 155 LEU 156 ASN 157 TYR 158 LYS 159 ARG 160 ASP 161 ASP 162 GLU 163 CYS 164 GLU 165 HIS 166 TYR 167 TYR 168 CYS 169
Unit 2	SER 2 MET 3 LEU 4 LEU 5 GLN 6 LYS 7 THR 8 LEU 9 CYS 10 ILE 11 VAL 12 LYS 13 PRO 14 ASP 15 GLY 16 VAL 17 ARG 18 ARG 19 GLY 20 LEU 21 ILE 22 GLY 23 ASP 24 VAL 25 VAL 26 SER 27 ARG 28 PHE 29 GLU 30 ARG 31 VAL 32 GLY 33 LEU 34 LYS 35 MET 36 VAL 37 ALA 38 ALA 39 LYS 40 MET 41 LEU 42 ILE 43 VAL 44 ASP 45 GLU 46 SER 47 LEU 48 ALA 49 LYS 50 LYS 51 HIS 52 TYR 53 LEU 54 TYR 55 ASP 56 ASP 57 ILE 58 VAL 59 PHE 60 ARG 61 HIS 62 SER 63 GLU 64 ALA 65 VAL 66 TRP 67 ASN 68 SER 69 LEU 70 ILE 71 LYS 72 PHE 73 ILE 74 SER 75 ASN 76 SER 77 PRO 78 VAL 79 PHE 80 THR 81 PHE 82 VAL 83 VAL 84 GLU 85 GLY 86 VAL 87 GLU 88 SER 89 ILE 90 GLU 91 VAL 92 VAL 93 ARG 94 LYS 95 LEU 96 CYS 97 GLY 98 ALA 99 THR 100 GLU 101 PRO 102 LYS 103 LEU 104 ALA 105 ILE 106 PRO 107 GLY 108 THR 109 ILE 110 ARG 111 GLY 112 ASP 113 PHE 114 SER 115 TYR 116 HIS 117 SER 118 PHE 119 LYS 120 TYR 121 SER 122 ASN 123 GLU 124 LYS 125 GLY 126 PHE 127 SER 128 ILE 129 TYR 130 ASN 131 VAL 132 ILE 133 HIS 134 ALA 135 SER 136 ALA 137 ASN 138 GLU 139 ALA 140 ASP 141 ALA 142 MET 143 ARG 144 GLU 145 ILE 146 PRO 147 ILE 148 TRP 149 PHE 150 LYS 151 ASP 152 ASN 153 GLU 154 ILE 155 LEU 156 ASN 157 TYR 158 LYS 159 ARG 160 ASP 161 ASP 162 GLU 163 CYS 164 GLU 165 HIS 166 TYR 167 TYR 168 CYS 169
Unit 3	SER 2 MET 3 LEU 4 LEU 5 GLN 6 LYS 7 THR 8 LEU 9 CYS 10 ILE 11 VAL 12 LYS 13 PRO 14 ASP 15 GLY 16 VAL 17 ARG 18 ARG 19 GLY 20 LEU 21 ILE 22 GLY 23 ASP 24 VAL 25 VAL 26 SER 27 ARG 28 PHE 29 GLU 30 ARG 31 VAL 32 GLY 33 LEU 34 LYS 35 MET 36 VAL 37 ALA 38 ALA 39 LYS 40 MET 41 LEU 42 ILE 43 VAL 44 ASP 45 GLU 46 SER 47 LEU 48 ALA 49 LYS 50 LYS 51 HIS 52 TYR 53 LEU 54 TYR 55 ASP 56 ASP 57 ILE 58 VAL 59 PHE 60 ARG 61 HIS 62 SER 63 GLU 64 ALA 65 VAL 66 TRP 67 ASN 68 SER 69 LEU 70 ILE 71 LYS 72 PHE 73 ILE 74 SER 75 ASN 76 SER 77 PRO 78 VAL 79 PHE 80 THR 81 PHE 82 VAL 83 VAL 84 GLU 85 GLY 86 VAL 87 GLU 88 SER 89 ILE 90 GLU 91 VAL 92 VAL 93 ARG 94 LYS 95 LEU 96 CYS 97 GLY 98 ALA 99 THR 100 GLU 101 PRO 102 LYS 103 LEU 104 ALA 105 ILE 106 PRO 107 GLY 108 THR 109 ILE 110 ARG 111 GLY 112 ASP 113 PHE 114 SER 115 TYR 116 HIS 117 SER 118 PHE 119 LYS 120 TYR 121 SER 122 ASN 123 GLU 124 LYS 125 GLY 126 PHE 127 SER 128 ILE 129 TYR 130 ASN 131 VAL 132 ILE 133 HIS 134 ALA 135 SER 136 ALA 137 ASN 138 GLU 139 ALA 140 ASP 141 ALA 142 MET 143 ARG 144 GLU 145 ILE 146 PRO 147 ILE 148 TRP 149 PHE 150 LYS 151 ASP 152 ASN 153 GLU 154 ILE 155 LEU 156 ASN 157 TYR 158 LYS 159 ARG 160 ASP 161 ASP 162 GLU 163 CYS 164 GLU 165 HIS 166 TYR 167 TYR 168 CYS 169
Unit 4	SER 2 MET 3 LEU 4 LEU 5 GLN 6 LYS 7 THR 8 LEU 9 CYS 10 ILE 11 VAL 12 LYS 13 PRO 14 ASP 15 GLY 16 VAL 17 ARG 18 ARG 19 GLY 20 LEU 21 ILE 22 GLY 23 ASP 24 VAL 25 VAL 26 SER 27 ARG 28 PHE 29 GLU 30 ARG 31 VAL 32 GLY 33 LEU 34 LYS 35 MET 36 VAL 37 ALA 38 ALA 39 LYS 40 MET 41 LEU 42 ILE 43 VAL 44 ASP 45 GLU 46 SER 47 LEU 48 ALA 49 LYS 50 LYS 51 HIS 52 TYR 53 LEU 54 TYR 55 ASP 56 ASP 57 ILE 58 VAL 59 PHE 60 ARG 61 HIS 62 SER 63 GLU 64 ALA 65 VAL 66 TRP 67 ASN 68 SER 69 LEU 70 ILE 71 LYS 72 PHE 73 ILE 74 SER 75 ASN 76 SER 77 PRO 78 VAL 79 PHE 80 THR 81 PHE 82 VAL 83 VAL 84 GLU 85 GLY 86 VAL 87 GLU 88 SER 89 ILE 90 GLU 91 VAL 92 VAL 93 ARG 94 LYS 95 LEU 96 CYS 97 GLY 98 ALA 99 THR 100 GLU 101 PRO 102 LYS 103 LEU 104 ALA 105 ILE 106 PRO 107 GLY 108 THR 109 ILE 110 ARG 111 GLY 112 ASP 113 PHE 114 SER 115 TYR 116 HIS 117 SER 118 PHE 119 LYS 120 TYR 121 SER 122 ASN 123 GLU 124 LYS 125 GLY 126 PHE 127 SER 128 ILE 129 TYR 130 ASN 131 VAL 132 ILE 133 HIS 134 ALA 135 SER 136 ALA 137 ASN 138 GLU 139 ALA 140 ASP 141 ALA 142 MET 143 ARG 144 GLU 145 ILE 146 PRO 147 ILE 148 TRP 149 PHE 150 LYS 151 ASP 152 ASN 153 GLU 154 ILE 155 LEU 156 ASN 157 TYR 158 LYS 159 ARG 160 ASP 161 ASP 162 GLU 163 CYS 164 GLU 165 HIS 166 TYR 167 TYR 168 CYS 169
Unit 5	SER 2 MET 3 LEU 4 LEU 5 GLN 6 LYS 7 THR 8 LEU 9 CYS 10 ILE 11 VAL 12 LYS 13 PRO 14 ASP 15 GLY 16 VAL 17 ARG 18 ARG 19 GLY 20 LEU 21 ILE 22 GLY 23 ASP 24 VAL 25 VAL 26 SER 27 ARG 28 PHE 29 GLU 30 ARG 31 VAL 32 GLY 33 LEU 34 LYS 35 MET 36 VAL 37 ALA 38 ALA 39 LYS 40 MET 41 LEU 42 ILE 43 VAL 44 ASP 45 GLU 46 SER 47 LEU 48 ALA 49 LYS 50 LYS 51 HIS 52 TYR 53 LEU 54 TYR 55 ASP 56 ASP 57 ILE 58 VAL 59 PHE 60 ARG 61 HIS 62 SER 63 GLU 64 ALA 65 VAL 66 TRP 67 ASN 68 SER 69 LEU 70 ILE 71 LYS 72 PHE 73 ILE 74 SER 75 ASN 76 SER 77 PRO 78 VAL 79 PHE 80 THR 81 PHE 82 VAL 83 VAL 84 GLU 85 GLY 86 VAL 87 GLU 88 SER 89 ILE 90 GLU 91 VAL 92 VAL 93 ARG 94 LYS 95 LEU 96 CYS 97 GLY 98 ALA 99 THR 100 GLU 101 PRO 102 LYS 103 LEU 104 ALA 105 ILE 106 PRO 107 GLY 108 THR 109 ILE 110 ARG 111 GLY 112 ASP 113 PHE 114 SER 115 TYR 116 HIS 117 SER 118 PHE 119 LYS 120 TYR 121 SER 122 ASN 123 GLU 124 LYS 125 GLY 126 PHE 127 SER 128 ILE 129 TYR 130 ASN 131 VAL 132 ILE 133 HIS 134 ALA 135 SER 136 ALA 137 ASN 138 GLU 139 ALA 140 ASP 141 ALA 142 MET 143 ARG 144 GLU 145 ILE 146 PRO 147 ILE 148 TRP 149 PHE 150 LYS 151 ASP 152 ASN 153 GLU 154 ILE 155 LEU 156 ASN 157 TYR 158 LYS 159 ARG 160 ASP 161 ASP 162 GLU 163 CYS 164 GLU 165 HIS 166 TYR 167 TYR 168 CYS 169
Unit 6	SER 2 MET 3 LEU 4 LEU 5 GLN 6 LYS 7 THR 8 LEU 9 CYS 10 ILE 11 VAL 12 LYS 13 PRO 14 ASP 15 GLY 16 VAL 17 ARG 18 ARG 19 GLY 20 LEU 21 ILE 22 GLY 23 ASP 24 VAL 25 VAL 26 SER 27 ARG 28 PHE 29 GLU 30 ARG 31 VAL 32 GLY 33 LEU 34 LYS 35 MET 36 VAL 37 ALA 38 ALA 39 LYS 40 MET 41 LEU 42 ILE 43 VAL 44 ASP 45 GLU 46 SER 47 LEU 48 ALA 49 LYS 50 LYS 51 HIS 52 TYR 53 LEU 54 TYR 55 ASP 56 ASP 57 ILE 58 VAL 59 PHE 60 ARG 61 HIS 62 SER 63 GLU 64 ALA 65 VAL 66 TRP 67 ASN 68 SER 69 LEU 70 ILE 71 LYS 72 PHE 73 ILE 74 SER 75 ASN 76 SER 77 PRO 78 VAL 79 PHE 80 THR 81 PHE 82 VAL 83 VAL 84 GLU 85 GLY 86 VAL 87 GLU 88 SER 89 ILE 90 GLU 91 VAL 92 VAL 93 ARG 94 LYS 95 LEU 96 CYS 97 GLY 98 ALA 99 THR 100 GLU 101 PRO 102 LYS 103 LEU 104 ALA 105 ILE 106 PRO 107 GLY 108 THR 109 ILE 110 ARG 111 GLY 112 ASP 113 PHE 114 SER 115 TYR 116 HIS 117 SER 118 PHE 119 LYS 120 TYR 121 SER 122 ASN 123 GLU 124 LYS 125 GLY 126 PHE 127 SER 128 ILE 129 TYR 130 ASN 131 VAL 132 ILE 133 HIS 134 ALA 135 SER 136 ALA 137 ASN 138 GLU 139 ALA 140 ASP 141 ALA 142 MET 143 ARG 144 GLU 145 ILE 146 PRO 147 ILE 148 TRP 149 PHE 150 LYS 151 ASP 152 ASN 153 GLU 154 ILE 155 LEU 156 ASN 157 TYR 158 LYS 159 ARG 160 ASP 161 ASP 162 GLU 163 CYS 164 GLU 165 HIS 166 TYR 167 TYR 168 CYS 169

Ligands

Unit 7	ADP 1001 VN4 1002 EDO 1003
Unit 8	VO4 201 EDO 202
Unit 9	ADP 1001 VN4 1002
Unit 10	ADP 1001 VN4 1002
Unit 11	VO4 201
Unit 12	VO4 201