[Image Library Home] | [Image Library Entry] |
Title | CRYSTAL STRUCTURE OF AN ACTIVE-SITE MUTANT OF THE GLYCOPROTE FROM THE PESTIVIRUS BVDV-1 IN COMPLEX WITH A CPUPC TRINUCLE | |
Keywords | VIRUS GLYCOPROTEIN, T2 RIBONUCLEASE, VIRAL PROTEIN-RNA COMPL | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4DWA | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | E(RNS) GLYCOPROTEIN | A | 154 | 1228 | 0 |
2 | Protein | E(RNS) GLYCOPROTEIN | B | 156 | 1241 | 0 |
3 | RNA | D | 3 | 57 | 0 | |
4 | Ligand | C | 5 | 0 | 61 | |
5 | Ligand | E | 2 | 0 | 28 | |
6 | Ligand | F | 2 | 0 | 28 | |
7 | Ligand | G | 6 | 0 | 72 | |
8 | Ligand | H | 2 | 0 | 28 | |
9 | Ligand | E(RNS) GLYCOPROTEIN | A | 6 | 0 | 48 |
10 | Ligand | E(RNS) GLYCOPROTEIN | B | 4 | 0 | 38 |
11 | Water | 63 | 0 | 63 | ||
total | 403 | 2526 | 366 |
Unit 1 | GLU3 ASN4 ILE5 THR6 GLN7 TRP8 ASN9 LEU10 GLN11 ASP12 ASN13 GLY14 THR15 GLU16 GLY17 ILE18 GLN19 ARG20 ALA21 MET22 PHE23 GLN24 ARG25 GLY26 VAL27 ASN28 ARG29 SER30 LEU31 LYS32 GLY33 ILE34 TRP35 PRO36 GLU37 LYS38 ILE39 CYS40 THR41 GLY42 VAL43 PRO44 SER45 HIS46 LEU47 ALA48 THR49 ASP50 THR51 GLU52 LEU53 LYS54 ALA55 ILE56 HIS57 GLY58 MET59 MET60 ASP61 ALA62 SER63 GLU64 LYS65 THR66 ASN67 TYR68 THR69 CYS70 CYS71 ARG72 LEU73 GLN74 ARG75 HIS76 GLU77 TRP78 ASN79 LYS80 HIS81 GLY82 TRP83 CYS84 ASN85 TRP86 TYR87 ASN88 ILE89 GLU90 PRO91 TRP92 ILE93 LEU94 LEU95 MET96 ASN97 LYS98 THR99 GLN100 ALA101 ASN102 LEU103 THR104 GLU105 GLY106 ARG110 GLU111 CYS112 ALA113 VAL114 THR115 CYS116 ARG117 TYR118 ASP119 ARG120 ASP121 SER122 ASP123 LEU124 ASN125 VAL126 VAL127 THR128 GLN129 ALA130 ARG131 ASP132 SER133 PRO134 THR135 PRO136 LEU137 THR138 GLY139 CYS140 LYS141 LYS142 GLY143 LYS144 ASN145 PHE146 SER147 PHE148 ALA149 GLY150 ILE151 LEU152 VAL153 GLN154 GLY155 PRO156 CYS157 ASN158 PHE159 |
Unit 2 | GLU3 ASN4 ILE5 THR6 GLN7 TRP8 ASN9 LEU10 GLN11 ASP12 ASN13 GLY14 THR15 GLU16 GLY17 ILE18 GLN19 ARG20 ALA21 MET22 PHE23 GLN24 ARG25 GLY26 VAL27 ASN28 ARG29 SER30 LEU31 LYS32 GLY33 ILE34 TRP35 PRO36 GLU37 LYS38 ILE39 CYS40 THR41 GLY42 VAL43 PRO44 SER45 HIS46 LEU47 ALA48 THR49 ASP50 THR51 GLU52 LEU53 LYS54 ALA55 ILE56 HIS57 GLY58 MET59 MET60 ASP61 ALA62 SER63 GLU64 LYS65 THR66 ASN67 TYR68 THR69 CYS70 CYS71 ARG72 LEU73 GLN74 ARG75 HIS76 GLU77 TRP78 ASN79 LYS80 HIS81 GLY82 TRP83 CYS84 ASN85 TRP86 TYR87 ASN88 ILE89 GLU90 PRO91 TRP92 ILE93 LEU94 LEU95 MET96 ASN97 LYS98 THR99 GLN100 ALA101 ASN102 LEU103 THR104 GLU105 GLY106 GLN107 PRO108 LEU109 ARG110 GLU111 CYS112 ALA113 VAL114 THR115 CYS116 ARG117 TYR118 ASP119 ARG120 ASP121 SER122 ASP123 LEU124 ASN125 VAL126 VAL127 THR128 GLN129 ALA130 ARG131 ASP132 SER133 PRO134 THR135 PRO136 LEU137 THR138 GLY139 CYS140 LYS141 LYS142 GLY143 LYS144 ASN145 PHE146 SER147 PHE148 ALA149 GLY150 ILE151 LEU152 VAL153 GLN154 GLY155 PRO156 CYS157 ASN158 |
Unit 3 | C1 U2 C3 |
Unit 4 | NAG1 NAG2 BMA3 BMA4 BMA5 |
Unit 5 | NAG1 NAG2 |
Unit 6 | NAG1 NAG2 |
Unit 7 | NAG1 NAG2 BMA3 BMA4 BMA5 MAN6 |
Unit 8 | NAG1 NAG2 |
Unit 9 | NAG1106 NAG1111 SO41112 SO41113 SO41114 SO41115 |
Unit 10 | NAG1109 NAG1110 SO41111 SO41112 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |