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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF CLADE A/E 93TH057 HIV-1 GP120 CORE IN C WITH AS-I-261
Keywords HIV-1 GP120, SMALL MOLECULE INHIBITOR, CD4 BINDING SITE, AS- VIRAL PROTEIN-TRANSCRIPTION INHIBITOR COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4DVV     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CLADE A/E 93TH057 HIV-1 GP120 CORE  A 339 2654 0
2  Protein   CLADE A/E 93TH057 HIV-1 GP120 CORE  B 339 2654 0
3  Ligand   CLADE A/E 93TH057 HIV-1 GP120 CORE  A 13 0 193
4  Ligand   CLADE A/E 93TH057 HIV-1 GP120 CORE  B 13 0 193
5 Water     378 0 378
total       1082 5308 764
Proteins
Unit 1 VAL44 TRP45 LYS46 ASP47 ALA48 ASP49 THR50 THR51 LEU52 PHE53 CYS54 ALA55 SER56 ASP57 ALA58 LYS59 ALA60 HIS61 GLU62 THR63 GLU64 VAL65 HIS66 ASN67 VAL68 TRP69 ALA70 THR71 HIS72 ALA73 CYS74 VAL75 PRO76 THR77 ASP78 PRO79 ASN80 PRO81 GLN82 GLU83 ILE84 HIS85 LEU86 GLU87 ASN88 VAL89 THR90 GLU91 ASN92 PHE93 ASN94 MET95 TRP96 LYS97 ASN98 ASN99 MET100 VAL101 GLU102 GLN103 MET104 GLN105 GLU106 ASP107 VAL108 ILE109 SER110 LEU111 TRP112 ASP113 GLN114 SER115 LEU116 GLN117 PRO118 CYS119 VAL120 LYS121 LEU122 THR123 GLY124 GLY198 SER199 VAL200 ILE201 LYS202 GLN203 ALA204 CYS205 PRO206 LYS207 ILE208 SER209 PHE210 ASP211 PRO212 ILE213 PRO214 ILE215 HIS216 TYR217 CYS218 THR219 PRO220 ALA221 GLY222 TYR223 VAL224 ILE225 LEU226 LYS227 CYS228 ASN229 ASP230 LYS231 ASN232 PHE233 ASN234 GLY235 THR236 GLY237 PRO238 CYS239 LYS240 ASN241 VAL242 SER243 SER244 VAL245 GLN246 CYS247 THR248 HIS249 GLY250 ILE251 LYS252 PRO253 VAL254 VAL255 SER256 THR257 GLN258 LEU259 LEU260 LEU261 ASN262 GLY263 SER264 LEU265 ALA266 GLU267 GLU268 GLU269 ILE270 ILE271 ILE272 ARG273 SER274 GLU275 ASN276 LEU277 THR278 ASN279 ASN280 ALA281 LYS282 THR283 ILE284 ILE285 VAL286 HIS287 LEU288 ASN289 LYS290 SER291 VAL292 GLU293 ILE294 ASN295 CYS296 THR297 ARG298 PRO299 SER300 ASN301 GLY324 ASP325 ILE326 ARG327 LYS328 ALA329 TYR330 CYS331 GLU332 ILE333 ASN334 GLY335 THR336 LYS337 TRP338 ASN339 LYS340 VAL341 LEU342 LYS343 GLN344 VAL345 THR346 GLU347 LYS348 LEU349 LYS350 GLU351 HIS352 PHE353 ASN354 ASN355 LYS357 THR358 ILE359 ILE360 PHE361 GLN362 PRO363 PRO364 SER365 GLY366 GLY367 ASP368 LEU369 GLU370 ILE371 THR372 MET373 HIS374 SER375 PHE376 ASN377 CYS378 ARG379 GLY380 GLU381 PHE382 PHE383 TYR384 CYS385 ASN386 THR387 THR388 GLN389 LEU390 PHE391 ASN392 ASN393 THR394 CYS395 ILE396 ASN411 GLY412 THR413 ILE414 THR415 LEU416 PRO417 CYS418 LYS419 ILE420 LYS421 GLN422 ILE423 ILE424 ASN425 MET426 TRP427 GLN428 GLY429 THR430 GLY431 GLN432 ALA433 MET434 TYR435 ALA436 PRO437 PRO438 ILE439 ASP440 GLY441 LYS442 ILE443 ASN444 CYS445 VAL446 SER447 ASN448 ILE449 THR450 GLY451 ILE452 LEU453 LEU454 THR455 ARG456 ASP457 GLY458 GLY459 ALA460 ASN461 ASN462 THR463 SER464 ASN465 GLU466 THR467 PHE468 ARG469 PRO470 GLY471 GLY472 GLY473 ASN474 ILE475 LYS476 ASP477 ASN478 TRP479 ARG480 SER481 GLU482 LEU483 TYR484 LYS485 TYR486 LYS487 VAL488 VAL489 GLN490 ILE491 GLU492
Unit 2 VAL44 TRP45 LYS46 ASP47 ALA48 ASP49 THR50 THR51 LEU52 PHE53 CYS54 ALA55 SER56 ASP57 ALA58 LYS59 ALA60 HIS61 GLU62 THR63 GLU64 VAL65 HIS66 ASN67 VAL68 TRP69 ALA70 THR71 HIS72 ALA73 CYS74 VAL75 PRO76 THR77 ASP78 PRO79 ASN80 PRO81 GLN82 GLU83 ILE84 HIS85 LEU86 GLU87 ASN88 VAL89 THR90 GLU91 ASN92 PHE93 ASN94 MET95 TRP96 LYS97 ASN98 ASN99 MET100 VAL101 GLU102 GLN103 MET104 GLN105 GLU106 ASP107 VAL108 ILE109 SER110 LEU111 TRP112 ASP113 GLN114 SER115 LEU116 GLN117 PRO118 CYS119 VAL120 LYS121 LEU122 THR123 GLY124 GLY198 SER199 VAL200 ILE201 LYS202 GLN203 ALA204 CYS205 PRO206 LYS207 ILE208 SER209 PHE210 ASP211 PRO212 ILE213 PRO214 ILE215 HIS216 TYR217 CYS218 THR219 PRO220 ALA221 GLY222 TYR223 VAL224 ILE225 LEU226 LYS227 CYS228 ASN229 ASP230 LYS231 ASN232 PHE233 ASN234 GLY235 THR236 GLY237 PRO238 CYS239 LYS240 ASN241 VAL242 SER243 SER244 VAL245 GLN246 CYS247 THR248 HIS249 GLY250 ILE251 LYS252 PRO253 VAL254 VAL255 SER256 THR257 GLN258 LEU259 LEU260 LEU261 ASN262 GLY263 SER264 LEU265 ALA266 GLU267 GLU268 GLU269 ILE270 ILE271 ILE272 ARG273 SER274 GLU275 ASN276 LEU277 THR278 ASN279 ASN280 ALA281 LYS282 THR283 ILE284 ILE285 VAL286 HIS287 LEU288 ASN289 LYS290 SER291 VAL292 GLU293 ILE294 ASN295 CYS296 THR297 ARG298 PRO299 SER300 ASN301 GLY324 ASP325 ILE326 ARG327 LYS328 ALA329 TYR330 CYS331 GLU332 ILE333 ASN334 GLY335 THR336 LYS337 TRP338 ASN339 LYS340 VAL341 LEU342 LYS343 GLN344 VAL345 THR346 GLU347 LYS348 LEU349 LYS350 GLU351 HIS352 PHE353 ASN354 ASN355 LYS357 THR358 ILE359 ILE360 PHE361 GLN362 PRO363 PRO364 SER365 GLY366 GLY367 ASP368 LEU369 GLU370 ILE371 THR372 MET373 HIS374 SER375 PHE376 ASN377 CYS378 ARG379 GLY380 GLU381 PHE382 PHE383 TYR384 CYS385 ASN386 THR387 THR388 GLN389 LEU390 PHE391 ASN392 ASN393 THR394 CYS395 ILE396 ASN411 GLY412 THR413 ILE414 THR415 LEU416 PRO417 CYS418 LYS419 ILE420 LYS421 GLN422 ILE423 ILE424 ASN425 MET426 TRP427 GLN428 GLY429 THR430 GLY431 GLN432 ALA433 MET434 TYR435 ALA436 PRO437 PRO438 ILE439 ASP440 GLY441 LYS442 ILE443 ASN444 CYS445 VAL446 SER447 ASN448 ILE449 THR450 GLY451 ILE452 LEU453 LEU454 THR455 ARG456 ASP457 GLY458 GLY459 ALA460 ASN461 ASN462 THR463 SER464 ASN465 GLU466 THR467 PHE468 ARG469 PRO470 GLY471 GLY472 GLY473 ASN474 ILE475 LYS476 ASP477 ASN478 TRP479 ARG480 SER481 GLU482 LEU483 TYR484 LYS485 TYR486 LYS487 VAL488 VAL489 GLN490 ILE491 GLU492
Ligands
Unit 3 NAG501 NAG502 NAG503 NAG504 NAG505 NAG506 NAG507 NAG508 NAG509 NAG510 NAG511 EPE512 0M1513
Unit 4 NAG501 NAG502 NAG503 NAG504 NAG505 NAG506 NAG507 NAG508 NAG509 NAG510 NAG511 EPE512 0M1513
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany