4DVR - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF YU2 GP120 CORE IN COMPLEX WITH FAB 48D 557
• Keywords: HIV-1 GP120, CD4 BINDING SITE, NBD-557, IMMUNE SYSTEM-TRANSC INHIBITOR COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4DVR	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ENVELOPE GLYCOPROTEIN GP120	G	288	2271	0
2	Protein	FAB 48D LIGHT CHAIN	L	211	1617	0
3	Protein	FAB 48D HEAVY CHAIN	H	219	1645	0
4	Ligand	ENVELOPE GLYCOPROTEIN GP120	G	8	0	145
5	Water			113	0	113
total				839	5533	258

Proteins

Unit 1	THR 90 GLU 91 ASN 92 PHE 93 ASN 94 MET 95 TRP 96 LYS 97 ASN 98 ASN 99 MET 100 VAL 101 GLU 102 GLN 103 MET 104 HIS 105 GLU 106 ASP 107 ILE 108 ILE 109 SER 110 LEU 111 TRP 112 ASP 113 GLN 114 SER 115 LEU 116 LYS 117 PRO 118 CYS 119 VAL 120 LYS 121 LEU 122 THR 123 GLY 124 GLY 198 SER 199 VAL 200 ILE 201 THR 202 GLN 203 ALA 204 CYS 205 PRO 206 LYS 207 VAL 208 SER 209 PHE 210 GLU 211 PRO 212 ILE 213 PRO 214 ILE 215 HIS 216 TYR 217 CYS 218 ALA 219 PRO 220 ALA 221 GLY 222 PHE 223 ALA 224 ILE 225 LEU 226 LYS 227 CYS 228 ASN 229 ASP 230 LYS 231 LYS 232 PHE 233 ASN 234 GLY 235 THR 236 GLY 237 PRO 238 CYS 239 THR 240 ASN 241 VAL 242 SER 243 THR 244 VAL 245 GLN 246 CYS 247 THR 248 HIS 249 GLY 250 ILE 251 ARG 252 PRO 253 VAL 254 VAL 255 SER 256 THR 257 GLN 258 LEU 259 LEU 260 LEU 261 ASN 262 GLY 263 SER 264 LEU 265 ALA 266 GLU 267 GLU 268 GLU 269 ILE 270 VAL 271 ILE 272 ARG 273 SER 274 GLU 275 ASN 276 PHE 277 THR 278 ASN 279 ASN 280 ALA 281 LYS 282 THR 283 ILE 284 ILE 285 VAL 286 GLN 287 LEU 288 ASN 289 GLU 290 SER 291 VAL 292 VAL 293 ILE 294 ASN 295 CYS 296 THR 297 ARG 298 PRO 299 ASN 300 ASN 301 GLY 324 ASP 325 ILE 326 ARG 327 GLN 328 ALA 329 HIS 330 CYS 331 ASN 332 LEU 333 SER 334 LYS 335 THR 336 GLN 337 TRP 338 GLU 339 ASN 340 THR 341 LEU 342 GLU 343 GLN 344 ILE 345 ALA 346 ILE 347 LYS 348 LEU 349 LYS 350 GLU 351 GLN 352 PHE 353 GLY 354 ASN 355 ASN 356 LYS 357 THR 358 ILE 359 ILE 360 PHE 361 ASN 362 PRO 363 SER 364 SER 365 GLY 366 GLY 367 ASP 368 PRO 369 GLU 370 ILE 371 VAL 372 THR 373 HIS 374 SER 375 PHE 376 ASN 377 CYS 378 GLY 379 GLY 380 GLU 381 PHE 382 PHE 383 TYR 384 CYS 385 ASN 386 SER 387 THR 388 GLN 389 LEU 390 PHE 391 THR 392 TRP 393 ASN 394 ASP 395 THR 396 ARG 412 ASN 413 ILE 414 THR 415 LEU 416 PRO 417 CYS 418 ARG 419 ILE 420 LYS 421 GLN 422 ILE 423 ILE 424 ASN 425 MET 426 TRP 427 GLN 428 GLU 429 VAL 430 GLY 431 LYS 432 ALA 433 MET 434 TYR 435 ALA 436 PRO 437 PRO 438 ILE 439 ARG 440 GLY 441 GLN 442 ILE 443 ARG 444 CYS 445 SER 446 SER 447 ASN 448 ILE 449 THR 450 GLY 451 LEU 452 LEU 453 LEU 454 THR 455 ARG 456 ASP 457 ASN 463 GLY 464 THR 465 GLU 466 ILE 467 PHE 468 ARG 469 PRO 470 GLY 471 GLY 472 GLY 473 ASP 474 MET 475 ARG 476 ASP 477 ASN 478 TRP 479 ARG 480 SER 481 GLU 482 LEU 483 TYR 484 LYS 485 TYR 486 LYS 487 VAL 488 VAL 489 LYS 490 ILE 491 GLU 492
Unit 2	ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 VAL 11 SER 12 ALA 13 SER 14 VAL 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 ASP 28 ILE 29 SER 30 THR 31 TRP 32 LEU 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 ALA 50 ALA 51 SER 52 THR 53 LEU 54 GLN 55 SER 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 SER 72 LEU 73 THR 74 ILE 75 ASN 76 SER 77 LEU 78 GLN 79 PRO 80 GLU 81 ASP 82 PHE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 ALA 91 ASN 92 SER 93 PHE 94 PHE 95 THR 96 PHE 97 GLY 98 GLY 99 GLY 100 THR 101 LYS 102 VAL 103 GLU 104 ILE 105 LYS 106 ARG 107 THR 108 VAL 109 ALA 110 ALA 111 PRO 112 SER 113 VAL 114 PHE 115 ILE 116 PHE 117 PRO 118 PRO 119 SER 120 ASP 121 GLU 122 GLN 123 LEU 124 LYS 125 SER 126 GLY 127 THR 128 ALA 129 SER 130 VAL 131 VAL 132 CYS 133 LEU 134 LEU 135 ASN 136 ASN 137 PHE 138 TYR 139 PRO 140 ARG 141 GLU 142 ALA 143 LYS 144 VAL 145 GLN 146 TRP 147 LYS 148 VAL 149 ASP 150 ASN 151 ALA 152 LEU 153 GLN 154 SER 155 GLY 156 ASN 157 SER 158 GLN 159 GLU 160 SER 161 VAL 162 THR 163 GLU 164 GLN 165 ASP 166 SER 167 LYS 168 ASP 169 SER 170 THR 171 TYR 172 SER 173 LEU 174 SER 175 SER 176 THR 177 LEU 178 THR 179 LEU 180 SER 181 LYS 182 ALA 183 ASP 184 TYR 185 GLU 186 LYS 187 HIS 188 LYS 189 LEU 190 TYR 191 ALA 192 CYS 193 GLU 194 VAL 195 THR 196 HIS 197 GLN 198 GLY 199 LEU 200 SER 201 SER 202 PRO 203 VAL 204 THR 205 LYS 206 SER 207 PHE 208 ASN 209 ARG 210 GLY 211 GLU 212
Unit 3	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLN 6 SER 7 GLY 8 ALA 9 GLU 10 VAL 11 LYS 12 LYS 13 PRO 14 GLY 15 ALA 16 THR 17 VAL 18 LYS 19 ILE 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 TYR 27 THR 28 PHE 29 SER 30 ASP 31 PHE 32 TYR 33 MET 34 TYR 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 MET 48 GLY 49 LEU 50 ILE 51 ASP 52 PRO 53 GLU 54 ASP 55 ALA 56 ASP 57 THR 58 MET 59 TYR 60 ALA 61 GLU 62 LYS 63 PHE 64 ARG 65 GLY 66 ARG 67 VAL 68 THR 69 ILE 70 THR 71 ALA 72 ASP 73 THR 74 SER 75 THR 76 ASP 77 THR 78 GLY 79 TYR 80 LEU 81 GLU 82 LEU 83 SER 84 SER 85 LEU 86 ARG 87 SER 88 GLU 89 ASP 90 THR 91 ALA 92 VAL 93 TYR 94 TYR 95 CYS 96 ALA 97 ALA 98 ASP 99 PRO 100 TRP 101 GLU 102 LEU 103 ASN 104 ALA 105 PHE 106 ASN 107 VAL 108 TRP 109 GLY 110 GLN 111 GLY 112 THR 113 LEU 114 VAL 115 SER 116 VAL 117 SER 118 SER 119 ALA 120 SER 121 THR 122 LYS 123 GLY 124 PRO 125 SER 126 VAL 127 PHE 128 PRO 129 LEU 130 ALA 131 PRO 132 SER 133 SER 134 LYS 135 SER 136 THR 137 SER 138 GLY 139 GLY 140 THR 141 ALA 142 ALA 143 LEU 144 GLY 145 CYS 146 LEU 147 VAL 148 LYS 149 ASP 150 TYR 151 PHE 152 PRO 153 GLU 154 PRO 155 VAL 156 THR 157 VAL 158 SER 159 TRP 160 ASN 161 SER 162 GLY 163 ALA 164 LEU 165 THR 166 SER 167 GLY 168 VAL 169 HIS 170 THR 171 PHE 172 PRO 173 ALA 174 VAL 175 LEU 176 GLN 177 SER 178 SER 179 GLY 180 LEU 181 TYR 182 SER 183 LEU 184 SER 185 SER 186 VAL 187 VAL 188 THR 189 VAL 190 PRO 191 SER 192 SER 193 SER 194 LEU 195 GLY 196 THR 197 GLN 198 THR 199 TYR 200 ILE 201 CYS 202 ASN 203 VAL 204 ASN 205 HIS 206 LYS 207 PRO 208 SER 209 ASN 210 THR 211 LYS 212 VAL 213 ASP 214 LYS 215 LYS 216 VAL 217 GLU 218 PRO 219

Ligands

Unit 4

NAG 501 NAG 502 NAG 503 NAG 504 NAG 505 NAG 506 NAG 507 0LY 508