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Sequence, Chains, Asymmetric and Biological Units

Title THE X-RAY CRYSTAL STRUCTURE OF FULL-LENGTH TYPE II HUMAN PLA
Keywords SERINE PROTEASE, FIBRINOLYSIS, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4DUR     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PLASMINOGEN  A 756 5871 0
2  Protein   PLASMINOGEN  B 754 5800 0
3  Ligand    C 3 0 45
4  Ligand    D 3 0 45
5  Ligand   PLASMINOGEN  A 7 0 13
6  Ligand   PLASMINOGEN  B 5 0 8
7 Water     1436 0 1436
total       2964 11671 1547
Proteins
Unit 1 LEU3 ASP4 ASP5 TYR6 VAL7 ASN8 THR9 GLN10 GLY11 ALA12 SER13 LEU14 PHE15 SER16 VAL17 THR18 LYS19 LYS20 GLN21 LEU22 GLY23 ALA24 GLY25 SER26 ILE27 GLU28 GLU29 CYS30 ALA31 ALA32 LYS33 CYS34 GLU35 GLU36 ASP37 GLU38 GLU39 PHE40 THR41 CYS42 ARG43 ALA44 PHE45 GLN46 TYR47 HIS48 SER49 LYS50 GLU51 GLN52 GLN53 CYS54 VAL55 ILE56 MET57 ALA58 GLU59 ASN60 ARG61 LYS62 SER63 SER64 ILE65 ILE66 ILE67 ARG68 MET69 ARG70 ASP71 VAL72 VAL73 LEU74 PHE75 GLU76 LYS77 LYS78 VAL79 TYR80 LEU81 SER82 GLU83 CYS84 LYS85 THR86 GLY87 ASN88 GLY89 LYS90 ASN91 TYR92 ARG93 GLY94 THR95 MET96 SER97 LYS98 THR99 LYS100 ASN101 GLY102 ILE103 THR104 CYS105 GLN106 LYS107 TRP108 SER109 SER110 THR111 SER112 PRO113 HIS114 ARG115 PRO116 ARG117 PHE118 SER119 PRO120 ALA121 THR122 HIS123 PRO124 SER125 GLU126 GLY127 LEU128 GLU129 GLU130 ASN131 TYR132 CYS133 ARG134 ASN135 PRO136 ASP137 ASN138 ASP139 PRO140 GLN141 GLY142 PRO143 TRP144 CYS145 TYR146 THR147 THR148 ASP149 PRO150 GLU151 LYS152 ARG153 TYR154 ASP155 TYR156 CYS157 ASP158 ILE159 LEU160 GLU161 CYS162 GLU163 GLU164 GLU165 CYS166 MET167 HIS168 CYS169 SER170 GLY171 GLU172 ASN173 TYR174 ASP175 GLY176 LYS177 ILE178 SER179 LYS180 THR181 MET182 SER183 GLY184 LEU185 GLU186 CYS187 GLN188 ALA189 TRP190 ASP191 SER192 GLN193 SER194 PRO195 HIS196 ALA197 HIS198 GLY199 TYR200 ILE201 PRO202 SER203 LYS204 PHE205 PRO206 ASN207 LYS208 ASN209 LEU210 LYS211 LYS212 ASN213 TYR214 CYS215 ARG216 ASN217 PRO218 ASP219 ARG220 GLU221 LEU222 ARG223 PRO224 TRP225 CYS226 PHE227 THR228 THR229 ASP230 PRO231 ASN232 LYS233 ARG234 TRP235 GLU236 LEU237 CYS238 ASP239 ILE240 PRO241 ARG242 CYS243 THR244 THR245 PRO246 PRO247 PRO248 SER249 SER250 GLY251 PRO252 THR253 TYR254 GLN255 CYS256 LEU257 LYS258 GLY259 THR260 GLY261 GLU262 ASN263 TYR264 ARG265 GLY266 ASN267 VAL268 ALA269 VAL270 THR271 VAL272 SER273 GLY274 HIS275 THR276 CYS277 GLN278 HIS279 TRP280 SER281 ALA282 GLN283 THR284 PRO285 HIS286 THR287 HIS288 ASN289 ARG290 THR291 PRO292 GLU293 ASN294 PHE295 PRO296 CYS297 LYS298 ASN299 LEU300 ASP301 GLU302 ASN303 TYR304 CYS305 ARG306 ASN307 PRO308 ASP309 GLY310 LYS311 ARG312 ALA313 PRO314 TRP315 CYS316 HIS317 THR318 THR319 ASN320 SER321 GLN322 VAL323 ARG324 TRP325 GLU326 TYR327 CYS328 LYS329 ILE330 PRO331 SER332 CYS333 ASP334 PRO345 THR346 ALA347 PRO348 PRO349 GLU350 LEU351 THR352 PRO353 VAL354 VAL355 GLN356 ASP357 CYS358 TYR359 HIS360 GLY361 ASP362 GLY363 GLN364 SER365 TYR366 ARG367 GLY368 THR369 SER370 SER371 THR372 THR373 THR374 THR375 GLY376 LYS377 LYS378 CYS379 GLN380 SER381 TRP382 SER383 SER384 MET385 THR386 PRO387 HIS388 ARG389 HIS390 GLN391 LYS392 THR393 PRO394 GLU395 ASN396 TYR397 PRO398 ASN399 ALA400 GLY401 LEU402 THR403 MET404 ASN405 TYR406 CYS407 ARG408 ASN409 PRO410 ASP411 ALA412 ASP413 LYS414 GLY415 PRO416 TRP417 CYS418 PHE419 THR420 THR421 ASP422 PRO423 SER424 VAL425 ARG426 TRP427 GLU428 TYR429 CYS430 ASN431 LEU432 LYS433 LYS434 CYS435 SER436 GLY437 SER458 GLU459 GLU460 ASP461 CYS462 MET463 PHE464 GLY465 ASN466 GLY467 LYS468 GLY469 TYR470 ARG471 GLY472 LYS473 ARG474 ALA475 THR476 THR477 VAL478 THR479 GLY480 THR481 PRO482 CYS483 GLN484 ASP485 TRP486 ALA487 ALA488 GLN489 GLU490 PRO491 HIS492 ARG493 HIS494 SER495 ILE496 PHE497 THR498 PRO499 GLU500 THR501 ASN502 PRO503 ARG504 ALA505 GLY506 LEU507 GLU508 LYS509 ASN510 TYR511 CYS512 ARG513 ASN514 PRO515 ASP516 GLY517 ASP518 VAL519 GLY520 GLY521 PRO522 TRP523 CYS524 TYR525 THR526 THR527 ASN528 PRO529 ARG530 LYS531 LEU532 TYR533 ASP534 TYR535 CYS536 ASP537 VAL538 PRO539 GLN540 CYS541 ALA542 ALA543 PRO544 SER545 PHE546 ASP547 CYS548 GLY549 LYS550 PRO551 GLN552 VAL553 GLU554 PRO555 LYS556 LYS557 CYS558 PRO559 GLY560 ARG561 VAL562 VAL563 GLY564 GLY565 CYS566 VAL567 ALA568 HIS569 PRO570 HIS571 SER572 TRP573 PRO574 TRP575 GLN576 VAL577 SER578 LEU579 ARG580 THR581 ARG582 PHE583 GLY584 MET585 HIS586 PHE587 CYS588 GLY589 GLY590 THR591 LEU592 ILE593 SER594 PRO595 GLU596 TRP597 VAL598 LEU599 THR600 ALA601 ALA602 HIS603 CYS604 LEU605 GLU606 LYS607 SER608 PRO609 ARG610 PRO611 SER612 SER613 TYR614 LYS615 VAL616 ILE617 LEU618 GLY619 ALA620 HIS621 GLN622 GLU623 VAL624 ASN625 LEU626 GLU627 PRO628 HIS629 VAL630 GLN631 GLU632 ILE633 GLU634 VAL635 SER636 ARG637 LEU638 PHE639 LEU640 GLU641 PRO642 THR643 ARG644 LYS645 ASP646 ILE647 ALA648 LEU649 LEU650 LYS651 LEU652 SER653 SER654 PRO655 ALA656 VAL657 ILE658 THR659 ASP660 LYS661 VAL662 ILE663 PRO664 ALA665 CYS666 LEU667 PRO668 SER669 PRO670 ASN671 TYR672 VAL673 VAL674 ALA675 ASP676 ARG677 THR678 GLU679 CYS680 PHE681 ILE682 THR683 GLY684 TRP685 GLY686 GLU687 THR688 PHE692 GLY693 ALA694 GLY695 LEU696 LEU697 LYS698 GLU699 ALA700 GLN701 LEU702 PRO703 VAL704 ILE705 GLU706 ASN707 LYS708 VAL709 CYS710 ASN711 ARG712 TYR713 GLU714 PHE715 LEU716 ASN717 GLY718 ARG719 VAL720 GLN721 SER722 THR723 GLU724 LEU725 CYS726 ALA727 GLY728 HIS729 LEU730 ALA731 GLY732 GLY733 THR734 ASP735 SER736 CYS737 GLN738 GLY739 ASP740 SER741 GLY742 GLY743 PRO744 LEU745 VAL746 CYS747 PHE748 GLU749 LYS750 ASP751 LYS752 TYR753 ILE754 LEU755 GLN756 GLY757 VAL758 THR759 SER760 TRP761 GLY762 LEU763 GLY764 CYS765 ALA766 ARG767 PRO768 ASN769 LYS770 PRO771 GLY772 VAL773 TYR774 VAL775 ARG776 VAL777 SER778 ARG779 PHE780 VAL781 THR782 TRP783 ILE784 GLU785 GLY786 VAL787 MET788 ARG789 ASN790 ASN791
Unit 2 PRO2 LEU3 ASP4 ASP5 TYR6 VAL7 ASN8 THR9 GLN10 GLY11 ALA12 SER13 LEU14 PHE15 SER16 VAL17 THR18 LYS19 LYS20 GLN21 LEU22 GLY23 ALA24 GLY25 SER26 ILE27 GLU28 GLU29 CYS30 ALA31 ALA32 LYS33 CYS34 GLU35 GLU36 ASP37 GLU38 GLU39 PHE40 THR41 CYS42 ARG43 ALA44 PHE45 GLN46 TYR47 HIS48 SER49 LYS50 GLU51 GLN52 GLN53 CYS54 VAL55 ILE56 MET57 ALA58 GLU59 ASN60 ARG61 LYS62 SER63 SER64 ILE65 ILE66 ILE67 ARG68 MET69 ARG70 ASP71 VAL72 VAL73 LEU74 PHE75 GLU76 LYS77 LYS78 VAL79 TYR80 LEU81 SER82 GLU83 CYS84 LYS85 THR86 GLY87 ASN88 GLY89 LYS90 ASN91 TYR92 ARG93 GLY94 THR95 MET96 SER97 LYS98 THR99 LYS100 ASN101 GLY102 ILE103 THR104 CYS105 GLN106 LYS107 TRP108 SER109 SER110 THR111 SER112 PRO113 HIS114 ARG115 PRO116 ARG117 PHE118 SER119 PRO120 ALA121 THR122 HIS123 PRO124 SER125 GLU126 GLY127 LEU128 GLU129 GLU130 ASN131 TYR132 CYS133 ARG134 ASN135 PRO136 ASP137 ASN138 ASP139 PRO140 GLN141 GLY142 PRO143 TRP144 CYS145 TYR146 THR147 THR148 ASP149 PRO150 GLU151 LYS152 ARG153 TYR154 ASP155 TYR156 CYS157 ASP158 ILE159 LEU160 GLU161 CYS162 GLU163 GLU164 GLU165 CYS166 MET167 HIS168 CYS169 SER170 GLY171 GLU172 ASN173 TYR174 ASP175 GLY176 LYS177 ILE178 SER179 LYS180 THR181 MET182 SER183 GLY184 LEU185 GLU186 CYS187 GLN188 ALA189 TRP190 ASP191 SER192 GLN193 SER194 PRO195 HIS196 ALA197 HIS198 GLY199 TYR200 ILE201 PRO202 SER203 LYS204 PHE205 PRO206 ASN207 LYS208 ASN209 LEU210 LYS211 LYS212 ASN213 TYR214 CYS215 ARG216 ASN217 PRO218 ASP219 ARG220 GLU221 LEU222 ARG223 PRO224 TRP225 CYS226 PHE227 THR228 THR229 ASP230 PRO231 ASN232 LYS233 ARG234 TRP235 GLU236 LEU237 CYS238 ASP239 ILE240 PRO241 ARG242 CYS243 THR244 THR245 PRO246 PRO247 PRO248 SER249 SER250 GLY251 PRO252 THR253 TYR254 GLN255 CYS256 LEU257 LYS258 GLY259 THR260 GLY261 GLU262 ASN263 TYR264 ARG265 GLY266 ASN267 VAL268 ALA269 VAL270 THR271 VAL272 SER273 GLY274 HIS275 THR276 CYS277 GLN278 HIS279 TRP280 SER281 ALA282 GLN283 THR284 PRO285 HIS286 THR287 HIS288 ASN289 ARG290 THR291 PRO292 GLU293 ASN294 PHE295 PRO296 CYS297 LYS298 ASN299 LEU300 ASP301 GLU302 ASN303 TYR304 CYS305 ARG306 ASN307 PRO308 ASP309 GLY310 LYS311 ARG312 ALA313 PRO314 TRP315 CYS316 HIS317 THR318 THR319 ASN320 SER321 GLN322 VAL323 ARG324 TRP325 GLU326 TYR327 CYS328 LYS329 ILE330 PRO331 SER332 CYS333 ASP334 PRO345 THR346 ALA347 PRO348 PRO349 GLU350 LEU351 THR352 PRO353 VAL354 VAL355 GLN356 ASP357 CYS358 TYR359 HIS360 GLY361 ASP362 GLY363 GLN364 SER365 TYR366 ARG367 GLY368 THR369 SER370 SER371 THR372 THR373 THR374 THR375 GLY376 LYS377 LYS378 CYS379 GLN380 SER381 TRP382 SER383 SER384 MET385 THR386 PRO387 HIS388 ARG389 HIS390 GLN391 LYS392 THR393 PRO394 GLU395 ASN396 TYR397 PRO398 ASN399 ALA400 GLY401 LEU402 THR403 MET404 ASN405 TYR406 CYS407 ARG408 ASN409 PRO410 ASP411 ALA412 ASP413 LYS414 GLY415 PRO416 TRP417 CYS418 PHE419 THR420 THR421 ASP422 PRO423 SER424 VAL425 ARG426 TRP427 GLU428 TYR429 CYS430 ASN431 LEU432 LYS433 LYS434 CYS435 SER436 GLY437 THR438 GLU439 ALA440 SER441 VAL442 VAL443 ALA444 PRO445 PRO446 PRO447 ASP461 CYS462 MET463 PHE464 GLY465 ASN466 TYR470 ARG471 GLY472 LYS473 THR476 THR477 VAL478 THR479 GLY480 THR481 PRO482 CYS483 GLN484 ASP485 TRP486 ALA487 ALA488 GLN489 GLU490 PRO491 HIS492 ARG493 HIS494 SER495 ILE496 PHE497 THR498 PRO499 GLU500 THR501 ASN502 PRO503 LEU507 GLU508 LYS509 ASN510 TYR511 CYS512 ARG513 ASN514 PRO515 ASP516 GLY517 ASP518 VAL519 GLY520 GLY521 PRO522 TRP523 CYS524 TYR525 THR526 THR527 ASN528 PRO529 ARG530 LYS531 LEU532 TYR533 ASP534 TYR535 CYS536 ASP537 VAL538 PRO539 GLN540 CYS541 PRO544 SER545 PHE546 ASP547 CYS548 GLY549 LYS550 PRO551 GLN552 VAL553 GLU554 PRO555 LYS556 LYS557 CYS558 PRO559 GLY560 ARG561 VAL562 VAL563 GLY564 GLY565 CYS566 VAL567 ALA568 HIS569 PRO570 HIS571 SER572 TRP573 PRO574 TRP575 GLN576 VAL577 SER578 LEU579 ARG580 THR581 ARG582 PHE583 GLY584 MET585 HIS586 PHE587 CYS588 GLY589 GLY590 THR591 LEU592 ILE593 SER594 PRO595 GLU596 TRP597 VAL598 LEU599 THR600 ALA601 ALA602 HIS603 CYS604 LEU605 GLU606 LYS607 SER608 PRO609 ARG610 PRO611 SER612 SER613 TYR614 LYS615 VAL616 ILE617 LEU618 GLY619 ALA620 HIS621 GLN622 GLU623 VAL624 ASN625 LEU626 GLU627 PRO628 HIS629 VAL630 GLN631 GLU632 ILE633 GLU634 VAL635 SER636 ARG637 LEU638 PHE639 LEU640 GLU641 PRO642 THR643 ARG644 LYS645 ASP646 ILE647 ALA648 LEU649 LEU650 LYS651 LEU652 SER653 SER654 PRO655 ALA656 VAL657 ILE658 THR659 ASP660 LYS661 VAL662 ILE663 PRO664 ALA665 CYS666 LEU667 PRO668 SER669 PRO670 ASN671 TYR672 VAL673 VAL674 ALA675 ASP676 ARG677 THR678 GLU679 CYS680 PHE681 ILE682 THR683 GLY684 TRP685 GLY686 GLU687 THR691 PHE692 GLY693 ALA694 GLY695 LEU696 LEU697 LYS698 GLU699 ALA700 GLN701 LEU702 PRO703 VAL704 ILE705 GLU706 ASN707 LYS708 VAL709 CYS710 ASN711 ARG712 TYR713 GLU714 PHE715 LEU716 ASN717 GLY718 ARG719 VAL720 GLN721 SER722 THR723 GLU724 LEU725 CYS726 ALA727 GLY728 HIS729 LEU730 ALA731 GLY732 GLY733 THR734 ASP735 SER736 CYS737 GLN738 GLY739 ASP740 SER741 GLY742 GLY743 PRO744 LEU745 VAL746 CYS747 PHE748 GLU749 LYS750 ASP751 LYS752 TYR753 ILE754 LEU755 GLN756 GLY757 VAL758 THR759 SER760 TRP761 GLY762 LEU763 GLY764 CYS765 ALA766 ARG767 PRO768 ASN769 LYS770 PRO771 GLY772 VAL773 TYR774 VAL775 ARG776 VAL777 SER778 ARG779 PHE780 VAL781 THR782 TRP783 ILE784 GLU785 GLY786 VAL787 MET788 ARG789 ASN790 ASN791
Ligands
Unit 3 NAG1 GAL2 SIA3
Unit 4 NAG1 GAL2 SIA3
Unit 5 CL801 CL802 CL803 CL804 K805 BCT806 ACT807
Unit 6 CL801 CL802 CL803 K804 BCT805
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany