4DKE - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF HUMAN INTERLEUKIN-34 BOUND TO FAB1.1
• Keywords: DIMERIC FOUR-HELIX BUNDLE CYTOKINE, IGG, GLYCOSYLATION, CYTO IMMUNE SYSTEM COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4DKE	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	INTERLEUKIN-34	A	157	1279	0
2	Protein	INTERLEUKIN-34	B	137	1126	0
3	Protein	FAB1.1 HEAVY CHAIN	H	220	1645	0
4	Protein	FAB1.1 LIGHT CHAIN	L	214	1645	0
5	Protein	FAB1.1 HEAVY CHAIN	I	216	1623	0
6	Protein	FAB1.1 LIGHT CHAIN	M	212	1630	0
7	Ligand		C	5	0	61
8	Ligand		D	4	0	50
9	Water			50	0	50
total				1215	8948	161

Proteins

Unit 1	GLU 34 CYS 35 THR 36 VAL 37 THR 38 GLY 39 PHE 40 LEU 41 ARG 42 ASP 43 LYS 44 LEU 45 GLN 46 TYR 47 ARG 48 SER 49 ARG 50 LEU 51 GLN 52 TYR 53 MET 54 LYS 55 HIS 56 TYR 57 PHE 58 PRO 59 ILE 60 ASN 61 TYR 62 LYS 63 ILE 64 SER 65 VAL 66 PRO 67 TYR 68 GLU 69 GLY 70 VAL 71 PHE 72 ARG 73 ILE 74 ALA 75 ASN 76 VAL 77 THR 78 ARG 79 LEU 80 GLN 81 ARG 82 ALA 83 GLN 84 VAL 85 SER 86 GLU 87 ARG 88 GLU 89 LEU 90 ARG 91 TYR 92 LEU 93 TRP 94 VAL 95 LEU 96 VAL 97 SER 98 LEU 99 SER 100 ALA 101 THR 102 GLU 103 SER 104 VAL 105 GLN 106 ASP 107 VAL 108 LEU 109 LEU 110 GLU 111 GLY 112 HIS 113 PRO 114 SER 115 TRP 116 LYS 117 TYR 118 LEU 119 GLN 120 GLU 121 VAL 122 GLU 123 THR 124 LEU 125 LEU 126 LEU 127 ASN 128 VAL 129 GLN 130 GLN 131 GLY 132 LEU 133 THR 134 ASP 135 VAL 136 GLU 137 VAL 138 SER 139 PRO 140 LYS 141 VAL 142 GLU 143 SER 144 VAL 145 LEU 146 SER 147 LEU 148 LEU 149 ASN 150 ALA 151 PRO 152 GLY 153 LEU 156 LYS 157 LEU 158 VAL 159 ARG 160 PRO 161 LYS 162 ALA 163 LEU 164 LEU 165 ASP 166 ASN 167 CYS 168 PHE 169 ARG 170 VAL 171 MET 172 GLU 173 LEU 174 LEU 175 TYR 176 CYS 177 SER 178 CYS 179 CYS 180 LYS 181 GLN 182 SER 183 SER 184 VAL 185 LEU 186 ASN 187 TRP 188 GLN 189 ASP 190 CYS 191 GLU 192
Unit 2	GLU 33 GLU 34 CYS 35 THR 36 VAL 37 THR 38 GLY 39 PHE 40 LEU 41 ARG 42 ASP 43 LYS 44 LEU 45 GLN 46 TYR 47 ARG 48 SER 49 ARG 50 LEU 51 GLN 52 TYR 53 MET 54 LYS 55 HIS 56 TYR 57 PHE 58 PRO 59 ILE 60 ASN 61 TYR 62 LYS 63 ILE 64 SER 65 VAL 66 PRO 67 TYR 68 GLU 69 GLY 70 VAL 71 PHE 72 ARG 73 ILE 74 ALA 75 ASN 76 VAL 77 THR 78 ARG 79 LEU 80 GLN 81 ARG 82 ALA 83 GLN 84 VAL 85 SER 86 GLU 87 ARG 88 GLU 89 LEU 90 ARG 91 TYR 92 LEU 93 TRP 94 VAL 95 LEU 96 VAL 97 SER 98 LEU 99 SER 100 ALA 101 THR 102 GLU 103 SER 104 VAL 105 GLN 106 ASP 107 VAL 108 LEU 109 LEU 110 GLU 111 GLY 112 HIS 113 PRO 114 SER 115 TRP 116 LYS 117 TYR 118 LEU 119 GLN 120 GLU 121 VAL 122 GLU 123 THR 124 LEU 125 LEU 126 LEU 127 ASN 128 VAL 129 GLN 130 GLN 131 GLY 132 LEU 133 VAL 142 GLU 143 SER 144 VAL 145 LEU 146 SER 147 LEU 148 LEU 149 ASN 150 ALA 151 ASN 155 LEU 156 LYS 157 LEU 158 VAL 159 ARG 160 PRO 161 LYS 162 ALA 163 LEU 164 LEU 165 ASP 166 ASN 167 CYS 168 PHE 169 ARG 170 VAL 171 MET 172 GLU 173 LEU 174 LEU 175 TYR 176 CYS 177 SER 178 CYS 179 CYS 180
Unit 3	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 SER 30 SER 31 THR 32 TRP 33 ILE 34 HIS 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 ALA 49 ARG 50 ILE 51 SER 52 PRO 52A TYR 53 TYR 54 TYR 55 TYR 56 SER 57 ASP 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ALA 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 THR 77 ALA 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 GLY 95 LEU 96 GLY 97 LYS 98 GLY 99 SER 100 LYS 100A ARG 100B GLY 100C ALA 100D MET 100E ASP 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 127 SER 128 GLY 134 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 ALA 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 SER 188 LEU 189 GLY 190 THR 191 GLN 192 THR 193 TYR 194 ILE 195 CYS 196 ASN 197 VAL 198 ASN 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 LYS 210 VAL 211 GLU 212 PRO 213 LYS 214 SER 215 CYS 216
Unit 4	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 SER 12 ALA 13 SER 14 VAL 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 ASP 28 VAL 29 SER 30 THR 31 ALA 32 VAL 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 SER 50 ALA 51 SER 52 PHE 53 LEU 54 TYR 55 SER 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 SER 77 LEU 78 GLN 79 PRO 80 GLU 81 ASP 82 PHE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 SER 91 PHE 92 TYR 93 PHE 94 PRO 95 ASN 96 THR 97 PHE 98 GLY 99 GLN 100 GLY 101 THR 102 LYS 103 VAL 104 GLU 105 ILE 106 LYS 107 ARG 108 THR 109 VAL 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 PHE 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 ASP 122 GLU 123 GLN 124 LEU 125 LYS 126 SER 127 GLY 128 THR 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 LEU 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 ARG 142 GLU 143 ALA 144 LYS 145 VAL 146 GLN 147 TRP 148 LYS 149 VAL 150 ASP 151 ASN 152 ALA 153 LEU 154 GLN 155 SER 156 GLY 157 ASN 158 SER 159 GLN 160 GLU 161 SER 162 VAL 163 THR 164 GLU 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 SER 182 LYS 183 ALA 184 ASP 185 TYR 186 GLU 187 LYS 188 HIS 189 LYS 190 VAL 191 TYR 192 ALA 193 CYS 194 GLU 195 VAL 196 THR 197 HIS 198 GLN 199 GLY 200 LEU 201 SER 202 SER 203 PRO 204 VAL 205 THR 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 GLY 212 GLU 213 CYS 214
Unit 5	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 SER 30 SER 31 THR 32 TRP 33 ILE 34 HIS 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 VAL 48 ALA 49 ARG 50 ILE 51 SER 52 PRO 52A TYR 53 TYR 54 TYR 55 TYR 56 SER 57 ASP 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ALA 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 THR 77 ALA 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 GLY 95 LEU 96 GLY 97 LYS 98 GLY 99 SER 100 LYS 100A ARG 100B GLY 100C ALA 100D MET 100E ASP 101 TYR 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 127 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 ALA 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 SER 188 LEU 189 GLY 190 THR 191 GLN 192 THR 193 TYR 194 ILE 195 CYS 196 ASN 197 VAL 198 ASN 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 LYS 210 VAL 211 GLU 212 PRO 213 LYS 214
Unit 6	ASP 1 ILE 2 GLN 3 MET 4 THR 5 GLN 6 SER 7 PRO 8 SER 9 SER 10 LEU 11 SER 12 ALA 13 SER 14 VAL 15 GLY 16 ASP 17 ARG 18 VAL 19 THR 20 ILE 21 THR 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 ASP 28 VAL 29 SER 30 THR 31 ALA 32 VAL 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 LYS 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 SER 50 ALA 51 SER 52 PHE 53 LEU 54 TYR 55 SER 56 GLY 57 VAL 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 SER 77 LEU 78 GLN 79 PRO 80 GLU 81 ASP 82 PHE 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 SER 91 PHE 92 TYR 93 PHE 94 PRO 95 ASN 96 THR 97 PHE 98 GLY 99 GLN 100 GLY 101 THR 102 LYS 103 VAL 104 GLU 105 ILE 106 LYS 107 ARG 108 THR 109 VAL 110 ALA 111 ALA 112 PRO 113 SER 114 VAL 115 PHE 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 ASP 122 GLU 123 GLN 124 LEU 125 LYS 126 SER 127 GLY 128 THR 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 LEU 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 ARG 142 GLU 143 ALA 144 LYS 145 VAL 146 GLN 147 TRP 148 LYS 149 VAL 150 ASP 151 ASN 152 ALA 153 LEU 154 GLN 155 SER 156 GLY 157 ASN 158 SER 159 GLN 160 GLU 161 SER 162 VAL 163 THR 164 GLU 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 LEU 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 SER 182 LYS 183 ALA 184 ASP 185 TYR 186 GLU 187 LYS 188 HIS 189 LYS 190 VAL 191 TYR 192 ALA 193 CYS 194 GLU 195 VAL 196 THR 197 HIS 198 GLN 199 GLY 200 LEU 201 SER 202 SER 203 PRO 204 VAL 205 THR 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 GLY 212

Ligands

Unit 7	NAG 1 NAG 2 MAN 3 MAN 4 BMA 5
Unit 8	NAG 1 NAG 2 MAN 3 BMA 4