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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE HEMAGGLUTININ FROM A HIGHLY PATHOGENIC H7N7 VIRUS
Keywords RECEPTOR BINDING, GLYCOPROTEIN, VIRAL PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4DJ6     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HEMAGGLUTININ  A 316 2422 0
2  Protein   HEMAGGLUTININ  B 170 1380 0
3  Protein   HEMAGGLUTININ  C 316 2422 0
4  Protein   HEMAGGLUTININ  D 171 1388 0
5  Protein   HEMAGGLUTININ  E 317 2426 0
6  Protein   HEMAGGLUTININ  F 169 1369 0
7  Ligand    G 2 0 28
8  Ligand   HEMAGGLUTININ  A 2 0 28
9  Ligand   HEMAGGLUTININ  B 1 0 14
10  Ligand   HEMAGGLUTININ  C 3 0 42
11  Ligand   HEMAGGLUTININ  D 1 0 14
12  Ligand   HEMAGGLUTININ  E 3 0 42
13  Ligand   HEMAGGLUTININ  F 1 0 14
14 Water     215 0 215
total       1687 11407 397
Proteins
Unit 1 ASP1 LYS2 ILE3 CYS4 LEU5 GLY6 HIS7 HIS8 ALA9 VAL10 SER11 ASN12 GLY13 THR14 LYS15 VAL16 ASN17 THR18 LEU19 THR20 GLU21 ARG22 GLY23 VAL24 GLU25 VAL26 VAL27 ASN28 ALA29 THR30 GLU31 THR32 VAL33 GLU34 ARG35 THR36 ASN37 VAL38 PRO39 ARG40 ILE41 CYS42 SER43 LYS44 GLY45 LYS46 ARG47 THR48 VAL49 ASP50 LEU51 GLY52 GLN53 CYS54 GLY55 LEU56 LEU57 GLY58 THR59 ILE60 THR61 GLY62 PRO63 PRO64 GLN65 CYS66 ASP67 GLN68 PHE69 LEU70 GLU71 PHE72 SER73 ALA74 ASP75 LEU76 ILE77 ILE78 GLU79 ARG80 ARG81 GLU82 GLY83 SER84 ASP85 VAL86 CYS87 TYR88 PRO89 GLY90 LYS91 PHE92 VAL93 ASN94 GLU95 GLU96 ALA97 LEU98 ARG99 GLN100 ILE101 LEU102 ARG103 GLU104 SER105 GLY106 GLY107 ILE108 ASP109 LYS110 GLU111 THR112 MET113 GLY114 PHE115 THR116 TYR117 SER118 GLY119 ILE120 ARG121 THR122 ASN123 GLY124 THR125 THR126 SER127 ALA128 CYS129 ARG130 ARG131 SER132 GLY133 SER134 SER135 PHE136 TYR137 ALA138 GLU139 MET140 LYS141 TRP142 LEU143 LEU144 SER145 ASN146 THR147 ASP148 ASN149 ALA150 ALA151 PHE152 PRO153 GLN154 MET155 THR156 LYS157 SER158 TYR159 LYS160 ASN161 THR162 ARG163 LYS164 ASP165 PRO166 ALA167 LEU168 ILE169 ILE170 TRP171 GLY172 ILE173 HIS174 HIS175 SER176 GLY177 SER178 THR179 THR180 GLU181 GLN182 THR183 LYS184 LEU185 TYR186 GLY187 SER188 GLY189 ASN190 LYS191 LEU192 ILE193 THR194 VAL195 GLY196 SER197 SER198 ASN199 TYR200 GLN201 GLN202 SER203 PHE204 VAL205 PRO206 SER207 PRO208 GLY209 ALA210 ARG211 PRO212 GLN213 VAL214 ASN215 GLY216 GLN217 SER218 GLY219 ARG220 ILE221 ASP222 PHE223 HIS224 TRP225 LEU226 ILE227 LEU228 ASN229 PRO230 ASN231 ASP232 THR233 VAL234 THR235 PHE236 SER237 PHE238 ASN239 GLY240 ALA241 PHE242 ILE243 ALA244 PRO245 ASP246 ARG247 ALA248 SER249 PHE250 LEU251 ARG252 GLY254 LYS255 SER256 MET257 GLY258 ILE259 GLN260 SER261 GLU262 VAL263 GLN264 VAL265 ASP266 ALA267 ASN268 CYS269 GLU270 GLY271 ASP272 CYS273 TYR274 HIS275 SER276 GLY277 GLY278 THR279 ILE280 ILE281 SER282 ASN283 LEU284 PRO285 PHE286 GLN287 ASN288 ILE289 ASN290 SER291 ARG292 ALA293 VAL294 GLY295 LYS296 CYS297 PRO298 ARG299 TYR300 VAL301 LYS302 GLN303 GLU304 SER305 LEU306 LEU307 LEU308 ALA309 THR310 GLY311 MET312 LYS313 ASN314 VAL315 PRO316 GLU317
Unit 2 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 ASN12 GLY13 TRP14 GLU15 GLY16 LEU17 ILE18 ASP19 GLY20 TRP21 TYR22 GLY23 PHE24 ARG25 HIS26 GLN27 ASN28 ALA29 GLN30 GLY31 GLU32 GLY33 THR34 ALA35 ALA36 ASP37 TYR38 LYS39 SER40 THR41 GLN42 SER43 ALA44 ILE45 ASP46 GLN47 ILE48 THR49 GLY50 LYS51 LEU52 ASN53 ARG54 LEU55 ILE56 GLU57 LYS58 THR59 ASN60 GLN61 GLN62 PHE63 GLU64 LEU65 ILE66 ASP67 ASN68 GLU69 PHE70 THR71 GLU72 VAL73 GLU74 ARG75 GLN76 ILE77 GLY78 ASN79 VAL80 ILE81 ASN82 TRP83 THR84 ARG85 ASP86 SER87 MET88 THR89 GLU90 VAL91 TRP92 SER93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 ALA101 MET102 GLU103 ASN104 GLN105 HIS106 THR107 ILE108 ASP109 LEU110 ALA111 ASP112 SER113 GLU114 MET115 ASN116 LYS117 LEU118 TYR119 GLU120 ARG121 VAL122 LYS123 ARG124 GLN125 LEU126 ARG127 GLU128 ASN129 ALA130 GLU131 GLU132 ASP133 GLY134 THR135 GLY136 CYS137 PHE138 GLU139 ILE140 PHE141 HIS142 LYS143 CYS144 ASP145 ASP146 ASP147 CYS148 MET149 ALA150 SER151 ILE152 ARG153 ASN154 ASN155 THR156 TYR157 ASP158 HIS159 SER160 LYS161 TYR162 ARG163 GLU164 GLU165 ALA166 ILE167 GLN168 ASN169 ARG170
Unit 3 ASP1 LYS2 ILE3 CYS4 LEU5 GLY6 HIS7 HIS8 ALA9 VAL10 SER11 ASN12 GLY13 THR14 LYS15 VAL16 ASN17 THR18 LEU19 THR20 GLU21 ARG22 GLY23 VAL24 GLU25 VAL26 VAL27 ASN28 ALA29 THR30 GLU31 THR32 VAL33 GLU34 ARG35 THR36 ASN37 VAL38 PRO39 ARG40 ILE41 CYS42 SER43 LYS44 GLY45 LYS46 ARG47 THR48 VAL49 ASP50 LEU51 GLY52 GLN53 CYS54 GLY55 LEU56 LEU57 GLY58 THR59 ILE60 THR61 GLY62 PRO63 PRO64 GLN65 CYS66 ASP67 GLN68 PHE69 LEU70 GLU71 PHE72 SER73 ALA74 ASP75 LEU76 ILE77 ILE78 GLU79 ARG80 ARG81 GLU82 GLY83 SER84 ASP85 VAL86 CYS87 TYR88 PRO89 GLY90 LYS91 PHE92 VAL93 ASN94 GLU95 GLU96 ALA97 LEU98 ARG99 GLN100 ILE101 LEU102 ARG103 GLU104 SER105 GLY106 GLY107 ILE108 ASP109 LYS110 GLU111 THR112 MET113 GLY114 PHE115 THR116 TYR117 SER118 GLY119 ILE120 ARG121 THR122 ASN123 GLY124 THR125 THR126 SER127 ALA128 CYS129 ARG130 ARG131 SER132 GLY133 SER134 SER135 PHE136 TYR137 ALA138 GLU139 MET140 LYS141 TRP142 LEU143 LEU144 SER145 ASN146 THR147 ASP148 ASN149 ALA150 ALA151 PHE152 PRO153 GLN154 MET155 THR156 LYS157 SER158 TYR159 LYS160 ASN161 THR162 ARG163 LYS164 ASP165 PRO166 ALA167 LEU168 ILE169 ILE170 TRP171 GLY172 ILE173 HIS174 HIS175 SER176 GLY177 SER178 THR179 THR180 GLU181 GLN182 THR183 LYS184 LEU185 TYR186 GLY187 SER188 GLY189 ASN190 LYS191 LEU192 ILE193 THR194 VAL195 GLY196 SER197 SER198 ASN199 TYR200 GLN201 GLN202 SER203 PHE204 VAL205 PRO206 SER207 PRO208 GLY209 ALA210 ARG211 PRO212 GLN213 VAL214 ASN215 GLY216 GLN217 SER218 GLY219 ARG220 ILE221 ASP222 PHE223 HIS224 TRP225 LEU226 ILE227 LEU228 ASN229 PRO230 ASN231 ASP232 THR233 VAL234 THR235 PHE236 SER237 PHE238 ASN239 GLY240 ALA241 PHE242 ILE243 ALA244 PRO245 ASP246 ARG247 ALA248 SER249 PHE250 LEU251 ARG252 GLY254 LYS255 SER256 MET257 GLY258 ILE259 GLN260 SER261 GLU262 VAL263 GLN264 VAL265 ASP266 ALA267 ASN268 CYS269 GLU270 GLY271 ASP272 CYS273 TYR274 HIS275 SER276 GLY277 GLY278 THR279 ILE280 ILE281 SER282 ASN283 LEU284 PRO285 PHE286 GLN287 ASN288 ILE289 ASN290 SER291 ARG292 ALA293 VAL294 GLY295 LYS296 CYS297 PRO298 ARG299 TYR300 VAL301 LYS302 GLN303 GLU304 SER305 LEU306 LEU307 LEU308 ALA309 THR310 GLY311 MET312 LYS313 ASN314 VAL315 PRO316 GLU317
Unit 4 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 ASN12 GLY13 TRP14 GLU15 GLY16 LEU17 ILE18 ASP19 GLY20 TRP21 TYR22 GLY23 PHE24 ARG25 HIS26 GLN27 ASN28 ALA29 GLN30 GLY31 GLU32 GLY33 THR34 ALA35 ALA36 ASP37 TYR38 LYS39 SER40 THR41 GLN42 SER43 ALA44 ILE45 ASP46 GLN47 ILE48 THR49 GLY50 LYS51 LEU52 ASN53 ARG54 LEU55 ILE56 GLU57 LYS58 THR59 ASN60 GLN61 GLN62 PHE63 GLU64 LEU65 ILE66 ASP67 ASN68 GLU69 PHE70 THR71 GLU72 VAL73 GLU74 ARG75 GLN76 ILE77 GLY78 ASN79 VAL80 ILE81 ASN82 TRP83 THR84 ARG85 ASP86 SER87 MET88 THR89 GLU90 VAL91 TRP92 SER93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 ALA101 MET102 GLU103 ASN104 GLN105 HIS106 THR107 ILE108 ASP109 LEU110 ALA111 ASP112 SER113 GLU114 MET115 ASN116 LYS117 LEU118 TYR119 GLU120 ARG121 VAL122 LYS123 ARG124 GLN125 LEU126 ARG127 GLU128 ASN129 ALA130 GLU131 GLU132 ASP133 GLY134 THR135 GLY136 CYS137 PHE138 GLU139 ILE140 PHE141 HIS142 LYS143 CYS144 ASP145 ASP146 ASP147 CYS148 MET149 ALA150 SER151 ILE152 ARG153 ASN154 ASN155 THR156 TYR157 ASP158 HIS159 SER160 LYS161 TYR162 ARG163 GLU164 GLU165 ALA166 ILE167 GLN168 ASN169 ARG170 ILE171
Unit 5 GLY0 ASP1 LYS2 ILE3 CYS4 LEU5 GLY6 HIS7 HIS8 ALA9 VAL10 SER11 ASN12 GLY13 THR14 LYS15 VAL16 ASN17 THR18 LEU19 THR20 GLU21 ARG22 GLY23 VAL24 GLU25 VAL26 VAL27 ASN28 ALA29 THR30 GLU31 THR32 VAL33 GLU34 ARG35 THR36 ASN37 VAL38 PRO39 ARG40 ILE41 CYS42 SER43 LYS44 GLY45 LYS46 ARG47 THR48 VAL49 ASP50 LEU51 GLY52 GLN53 CYS54 GLY55 LEU56 LEU57 GLY58 THR59 ILE60 THR61 GLY62 PRO63 PRO64 GLN65 CYS66 ASP67 GLN68 PHE69 LEU70 GLU71 PHE72 SER73 ALA74 ASP75 LEU76 ILE77 ILE78 GLU79 ARG80 ARG81 GLU82 GLY83 SER84 ASP85 VAL86 CYS87 TYR88 PRO89 GLY90 LYS91 PHE92 VAL93 ASN94 GLU95 GLU96 ALA97 LEU98 ARG99 GLN100 ILE101 LEU102 ARG103 GLU104 SER105 GLY106 GLY107 ILE108 ASP109 LYS110 GLU111 THR112 MET113 GLY114 PHE115 THR116 TYR117 SER118 GLY119 ILE120 ARG121 THR122 ASN123 GLY124 THR125 THR126 SER127 ALA128 CYS129 ARG130 ARG131 SER132 GLY133 SER134 SER135 PHE136 TYR137 ALA138 GLU139 MET140 LYS141 TRP142 LEU143 LEU144 SER145 ASN146 THR147 ASP148 ASN149 ALA150 ALA151 PHE152 PRO153 GLN154 MET155 THR156 LYS157 SER158 TYR159 LYS160 ASN161 THR162 ARG163 LYS164 ASP165 PRO166 ALA167 LEU168 ILE169 ILE170 TRP171 GLY172 ILE173 HIS174 HIS175 SER176 GLY177 SER178 THR179 THR180 GLU181 GLN182 THR183 LYS184 LEU185 TYR186 GLY187 SER188 GLY189 ASN190 LYS191 LEU192 ILE193 THR194 VAL195 GLY196 SER197 SER198 ASN199 TYR200 GLN201 GLN202 SER203 PHE204 VAL205 PRO206 SER207 PRO208 GLY209 ALA210 ARG211 PRO212 GLN213 VAL214 ASN215 GLY216 GLN217 SER218 GLY219 ARG220 ILE221 ASP222 PHE223 HIS224 TRP225 LEU226 ILE227 LEU228 ASN229 PRO230 ASN231 ASP232 THR233 VAL234 THR235 PHE236 SER237 PHE238 ASN239 GLY240 ALA241 PHE242 ILE243 ALA244 PRO245 ASP246 ARG247 ALA248 SER249 PHE250 LEU251 ARG252 GLY254 LYS255 SER256 MET257 GLY258 ILE259 GLN260 SER261 GLU262 VAL263 GLN264 VAL265 ASP266 ALA267 ASN268 CYS269 GLU270 GLY271 ASP272 CYS273 TYR274 HIS275 SER276 GLY277 GLY278 THR279 ILE280 ILE281 SER282 ASN283 LEU284 PRO285 PHE286 GLN287 ASN288 ILE289 ASN290 SER291 ARG292 ALA293 VAL294 GLY295 LYS296 CYS297 PRO298 ARG299 TYR300 VAL301 LYS302 GLN303 GLU304 SER305 LEU306 LEU307 LEU308 ALA309 THR310 GLY311 MET312 LYS313 ASN314 VAL315 PRO316 GLU317
Unit 6 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 ILE10 GLU11 ASN12 GLY13 TRP14 GLU15 GLY16 LEU17 ILE18 ASP19 GLY20 TRP21 TYR22 GLY23 PHE24 ARG25 HIS26 GLN27 ASN28 ALA29 GLN30 GLY31 GLU32 GLY33 THR34 ALA35 ALA36 ASP37 TYR38 LYS39 SER40 THR41 GLN42 SER43 ALA44 ILE45 ASP46 GLN47 ILE48 THR49 GLY50 LYS51 LEU52 ASN53 ARG54 LEU55 ILE56 GLU57 LYS58 THR59 ASN60 GLN61 GLN62 PHE63 GLU64 LEU65 ILE66 ASP67 ASN68 GLU69 PHE70 THR71 GLU72 VAL73 GLU74 ARG75 GLN76 ILE77 GLY78 ASN79 VAL80 ILE81 ASN82 TRP83 THR84 ARG85 ASP86 SER87 MET88 THR89 GLU90 VAL91 TRP92 SER93 TYR94 ASN95 ALA96 GLU97 LEU98 LEU99 VAL100 ALA101 MET102 GLU103 ASN104 GLN105 HIS106 THR107 ILE108 ASP109 LEU110 ALA111 ASP112 SER113 GLU114 MET115 ASN116 LYS117 LEU118 TYR119 GLU120 ARG121 VAL122 LYS123 ARG124 GLN125 LEU126 ARG127 GLU128 ASN129 ALA130 GLU131 GLU132 ASP133 GLY134 THR135 GLY136 CYS137 PHE138 GLU139 ILE140 PHE141 HIS142 LYS143 CYS144 ASP145 ASP146 ASP147 CYS148 MET149 ALA150 SER151 ILE152 ARG153 ASN154 ASN155 THR156 TYR157 ASP158 HIS159 SER160 LYS161 TYR162 ARG163 GLU164 GLU165 ALA166 ILE167 GLN168 ASN169
Ligands
Unit 7 NAG1 NAG2
Unit 8 NAG403 NAG404
Unit 9 NAG201
Unit 10 NAG401 NAG402 NAG403
Unit 11 NAG201
Unit 12 NAG401 NAG402 NAG403
Unit 13 NAG201
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany