4DGI - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF POM1 FAB FRAGMENT COMPLEXED WITH HUMAN PRPC FRA 230
• Keywords: PRION, ANTIBODY, PROTEIN BINDING
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4DGI	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	MAJOR PRION PROTEIN	A	97	811	0
2	Protein	POM1 FAB HEAVY CHAIN	H	218	1642	0
3	Protein	POM1 FAB LIGHT CHAIN	L	213	1652	0
4	Ligand	POM1 FAB LIGHT CHAIN	L	1	0	1
5	Water			170	0	170
total				699	4105	171

Proteins

Unit 1	GLY 126 GLY 127 TYR 128 MET 129 LEU 130 GLY 131 SER 132 ALA 133 MET 134 SER 135 ARG 136 PRO 137 ILE 138 ILE 139 HIS 140 PHE 141 GLY 142 SER 143 ASP 144 TYR 145 GLU 146 ASP 147 ARG 148 TYR 149 TYR 150 ARG 151 GLU 152 ASN 153 MET 154 HIS 155 ARG 156 TYR 157 PRO 158 ASN 159 GLN 160 VAL 161 TYR 162 TYR 163 ARG 164 PRO 165 MET 166 ASP 167 GLU 168 TYR 169 SER 170 ASN 171 GLN 172 ASN 173 ASN 174 PHE 175 VAL 176 HIS 177 ASP 178 CYS 179 VAL 180 ASN 181 ILE 182 THR 183 ILE 184 LYS 185 GLN 186 HIS 187 THR 188 VAL 189 THR 190 THR 191 THR 192 THR 193 LYS 194 GLY 195 GLU 196 ASN 197 PHE 198 THR 199 GLU 200 THR 201 ASP 202 VAL 203 LYS 204 MET 205 MET 206 GLU 207 ARG 208 VAL 209 VAL 210 GLU 211 GLN 212 MET 213 CYS 214 ILE 215 THR 216 GLN 217 TYR 218 GLU 219 ARG 220 GLU 221 SER 222
Unit 2	GLN 1 VAL 2 GLN 3 LEU 4 GLN 5 GLN 6 SER 7 GLY 8 THR 9 GLU 10 LEU 11 VAL 12 MET 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 LYS 19 MET 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 TYR 27 THR 28 PHE 29 THR 30 ASP 31 TYR 32 TRP 33 MET 34 HIS 35 TRP 36 VAL 37 LYS 38 GLN 39 ARG 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 GLY 49 SER 50 ILE 51 ASP 52 PRO 53 SER 54 ASP 55 SER 56 TYR 57 THR 58 SER 59 HIS 60 ASN 61 GLU 62 LYS 63 PHE 64 LYS 65 GLY 66 LYS 67 ALA 68 THR 69 LEU 70 THR 71 VAL 72 ASP 73 GLU 74 SER 75 SER 76 SER 77 THR 78 ALA 79 TYR 80 MET 81 GLN 82 LEU 83 SER 84 SER 85 LEU 86 THR 87 SER 88 GLU 89 ASP 90 SER 91 ALA 92 VAL 93 TYR 94 PHE 95 CYS 96 SER 97 ARG 98 SER 99 GLY 100 TYR 101 GLY 102 TYR 103 TYR 104 ALA 105 MET 106 GLU 107 TYR 108 TRP 109 GLY 110 GLN 111 GLY 112 THR 113 SER 114 VAL 115 THR 116 VAL 117 SER 118 SER 119 ALA 120 LYS 121 THR 122 THR 123 PRO 124 PRO 125 SER 126 VAL 127 TYR 128 PRO 129 LEU 130 ALA 131 PRO 132 GLY 133 GLY 134 GLY 135 ALA 136 THR 137 ASN 138 SER 139 MET 140 VAL 141 THR 142 LEU 143 GLY 144 CYS 145 LEU 146 VAL 147 LYS 148 GLY 149 TYR 150 PHE 151 PRO 152 GLU 153 PRO 154 VAL 155 THR 156 VAL 157 THR 158 TRP 159 ASN 160 SER 161 GLY 162 SER 163 LEU 164 SER 165 GLY 166 GLY 167 VAL 168 HIS 169 THR 170 PHE 171 PRO 172 ALA 173 VAL 174 LEU 175 GLN 176 SER 177 ASP 178 LEU 179 TYR 180 THR 181 LEU 182 SER 183 SER 184 SER 185 VAL 186 THR 187 VAL 188 PRO 189 SER 190 SER 191 THR 192 TRP 193 PRO 194 SER 195 GLU 196 THR 197 VAL 198 THR 199 CYS 200 ASN 201 VAL 202 ALA 203 HIS 204 PRO 205 ALA 206 SER 207 SER 208 THR 209 LYS 210 VAL 211 ASP 212 LYS 213 LYS 214 ILE 215 VAL 216 PRO 217 ARG 218
Unit 3	ASP 1 ILE 2 VAL 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 ALA 9 ILE 10 LEU 11 SER 12 VAL 13 SER 14 PRO 15 GLY 16 GLU 17 ARG 18 VAL 19 SER 20 PHE 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 ASN 28 ILE 29 GLY 30 THR 31 SER 32 ILE 33 HIS 34 TRP 35 TYR 36 GLN 37 GLN 38 ARG 39 THR 40 ASN 41 GLU 42 SER 43 PRO 44 ARG 45 LEU 46 ILE 47 ILE 48 LYS 49 TYR 50 ALA 51 SER 52 GLU 53 SER 54 ILE 55 SER 56 GLY 57 ILE 58 PRO 59 SER 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 ASP 70 PHE 71 THR 72 LEU 73 SER 74 ILE 75 ASN 76 SER 77 VAL 78 GLU 79 SER 80 GLU 81 ASP 82 ILE 83 ALA 84 ASP 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 SER 91 ASN 92 THR 93 TRP 94 PRO 95 TYR 96 THR 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 LYS 103 LEU 104 GLU 105 LEU 106 LYS 107 ARG 108 ALA 109 ASP 110 ALA 111 ALA 112 PRO 113 THR 114 VAL 115 SER 116 ILE 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLN 124 LEU 125 THR 126 SER 127 GLY 128 GLY 129 ALA 130 SER 131 VAL 132 VAL 133 CYS 134 PHE 135 LEU 136 ASN 137 ASN 138 PHE 139 TYR 140 PRO 141 LYS 142 ASP 143 ILE 144 ASN 145 VAL 146 LYS 147 TRP 148 LYS 149 ILE 150 ASP 151 GLY 152 SER 153 GLU 154 ARG 155 GLN 156 ASN 157 GLY 158 VAL 159 LEU 160 ASN 161 SER 162 GLU 163 THR 164 ASP 165 GLN 166 ASP 167 SER 168 LYS 169 ASP 170 SER 171 THR 172 TYR 173 SER 174 MET 175 SER 176 SER 177 THR 178 LEU 179 THR 180 LEU 181 THR 182 LYS 183 ASP 184 GLU 185 TYR 186 GLU 187 ARG 188 HIS 189 ASN 190 THR 191 TYR 192 THR 193 CYS 194 GLU 195 ALA 196 THR 197 HIS 198 LYS 199 THR 200 SER 201 THR 202 SER 203 PRO 204 ILE 205 VAL 206 LYS 207 SER 208 PHE 209 ASN 210 ARG 211 ASN 212 GLU 213

Ligands

Unit 4

NA 300