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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE IL-1B SIGNALING COMPLEX
Keywords B-TREFOIL, IMMUNOGLOBULIN, IMMUNE SYSTEM, EXTRACELLULAR
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4DEP     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   INTERLEUKIN-1 BETA  A 151 1167 0
2  Protein   INTERLEUKIN-1 RECEPTOR TYPE 1  B 296 2174 0
3  Protein   INTERLEUKIN-1 RECEPTOR ACCESSORY PROTEIN  C 287 2250 0
4  Protein   INTERLEUKIN-1 BETA  D 152 1193 0
5  Protein   INTERLEUKIN-1 RECEPTOR TYPE 1  E 307 2432 0
6  Protein   INTERLEUKIN-1 RECEPTOR ACCESSORY PROTEIN  F 289 2240 0
7  Ligand   INTERLEUKIN-1 RECEPTOR TYPE 1  B 3 0 42
8  Ligand   INTERLEUKIN-1 RECEPTOR ACCESSORY PROTEIN  C 4 0 56
9  Ligand   INTERLEUKIN-1 RECEPTOR TYPE 1  E 4 0 56
10  Ligand   INTERLEUKIN-1 RECEPTOR ACCESSORY PROTEIN  F 3 0 42
11 Water     6 0 7
total       1502 11456 203

Proteins
Unit 1 ALA1 PRO2 VAL3 ARG4 SER5 LEU6 ASN7 CYS8 THR9 LEU10 ARG11 ASP12 SER13 GLN14 GLN15 LYS16 SER17 LEU18 VAL19 MET20 SER21 GLY22 PRO23 TYR24 GLU25 LEU26 LYS27 ALA28 LEU29 HIS30 LEU31 GLN32 GLY33 GLN34 ASP35 MET36 GLU37 GLN38 GLN39 VAL40 VAL41 PHE42 SER43 MET44 SER45 PHE46 VAL47 GLN48 GLY49 GLU50 GLU51 SER52 ASN53 ASP54 LYS55 ILE56 PRO57 VAL58 ALA59 LEU60 GLY61 LEU62 LYS63 GLU64 LYS65 ASN66 LEU67 TYR68 LEU69 SER70 CYS71 VAL72 LEU73 LYS74 ASP75 ASP76 LYS77 PRO78 THR79 LEU80 GLN81 LEU82 GLU83 SER84 VAL85 ASP86 PRO87 LYS88 ASN89 TYR90 PRO91 LYS92 LYS93 LYS94 MET95 GLU96 LYS97 ARG98 PHE99 VAL100 PHE101 ASN102 LYS103 ILE104 GLU105 ILE106 ASN107 ASN108 LYS109 LEU110 GLU111 PHE112 GLU113 SER114 ALA115 GLN116 PHE117 PRO118 ASN119 TRP120 TYR121 ILE122 SER123 THR124 SER125 GLN126 ALA127 GLU128 ASN129 MET130 PRO131 VAL132 PHE133 LEU134 GLY135 GLY136 THR137 LYS138 GLY139 GLY140 GLN141 ASP142 ILE143 THR144 ASP145 PHE146 THR147 MET148 GLN149 PHE150 VAL151
Unit 2 LYS7 GLU8 ARG9 GLU10 GLU11 LYS12 ILE13 ILE14 LEU15 VAL16 SER17 SER18 ALA19 ASN20 GLU21 ILE22 ASP23 VAL24 ARG25 PRO26 CYS27 PRO28 LEU29 ASN30 PRO31 ASN32 GLU33 GLY36 THR37 ILE38 THR39 TRP40 TYR41 LYS42 ASP43 PRO48 VAL49 SER50 THR51 GLU52 GLN53 ALA54 SER55 ARG56 ILE57 HIS58 GLN59 HIS60 LYS61 GLU62 LYS63 LEU64 TRP65 PHE66 VAL67 PRO68 ALA69 LYS70 VAL71 GLU72 ASP73 SER74 GLY75 HIS76 TYR77 TYR78 CYS79 VAL80 VAL81 ARG82 ASN83 SER84 SER85 TYR86 CYS87 LEU88 ARG89 ILE90 LYS91 ILE92 SER93 ALA94 LYS95 PHE96 VAL97 GLU98 ASN99 GLU100 PRO101 ASN102 LEU103 CYS104 TYR105 ASN106 ALA107 GLN108 ALA109 ILE110 PHE111 LYS112 GLN113 LYS114 LEU115 PRO116 VAL117 ALA118 GLY119 ASP120 GLY121 GLY122 LEU123 VAL124 CYS125 PRO126 TYR127 MET128 GLU129 PHE130 PHE131 LYS132 ASN133 GLU134 ASN135 ASN136 GLU137 LEU138 PRO139 LYS140 LEU141 GLN142 TRP143 TYR144 LYS145 ASP146 CYS147 LYS148 PRO149 LEU150 LEU151 LEU152 ASP153 ASN154 ILE155 HIS156 PHE157 SER158 GLY159 VAL160 LYS161 ASP162 ARG163 LEU164 ILE165 VAL166 MET167 ASN168 VAL169 ALA170 GLU171 LYS172 HIS173 ARG174 GLY175 ASN176 TYR177 THR178 CYS179 HIS180 ALA181 SER182 TYR183 THR184 TYR185 LEU186 GLY187 LYS188 GLN189 TYR190 PRO191 ILE192 THR193 ARG194 VAL195 ILE196 GLU197 PHE198 ILE199 THR200 LEU201 GLU202 GLU203 ASN204 LYS205 PRO206 THR207 ARG208 PRO209 VAL210 ILE211 VAL212 SER213 PRO214 ALA215 ASN216 GLU217 THR218 MET219 GLU220 VAL221 ASP222 LEU223 GLN226 ILE227 GLN228 LEU229 ILE230 CYS231 ASN232 VAL233 THR234 GLY235 GLN236 LEU237 SER238 ASP239 ILE240 ALA241 TYR242 TRP243 LYS244 TRP245 ASN246 GLY247 SER248 VAL249 ILE250 ASP251 GLU252 ASP253 ASP254 PRO255 VAL256 LEU257 GLY258 GLU259 ASP260 TYR261 TYR262 SER263 VAL264 GLU265 ASN266 PRO267 ALA268 ASN269 LYS270 ARG271 ARG272 SER273 THR274 LEU275 ILE276 THR277 VAL278 LEU279 ASN280 ILE281 SER282 GLU283 ILE284 GLU285 SER286 ARG287 PHE288 TYR289 LYS290 HIS291 PRO292 PHE293 THR294 CYS295 PHE296 ALA297 LYS298 ASN299 THR300 HIS301 GLY302 ILE303 ASP304 ALA305 ALA306 TYR307 ILE308 GLN309 LEU310
Unit 3 ARG3 CYS4 ASP5 ASP6 TRP7 GLY8 LEU9 ASP10 THR11 MET12 ARG13 GLN14 ILE15 GLN16 VAL17 PHE18 GLU19 ASP20 GLU21 PRO22 ALA23 ARG24 ILE25 LYS26 CYS27 PRO28 LEU29 PHE30 GLU31 HIS32 PHE33 LEU34 LYS35 PHE36 ASN37 TYR38 SER39 THR40 ALA41 HIS42 SER43 ALA44 GLY45 LEU46 THR47 LEU48 ILE49 TRP50 TYR51 TRP52 THR53 ARG54 GLN55 ASP56 ARG57 ASP58 LEU59 GLU60 GLU61 PRO62 ILE63 ASN64 PHE65 ARG66 LEU67 PRO68 GLU69 ASN70 ARG71 ILE72 SER73 LYS74 GLU75 LYS76 ASP77 VAL78 LEU79 TRP80 PHE81 ARG82 PRO83 THR84 LEU85 LEU86 ASN87 ASP88 THR89 GLY90 ASN91 TYR92 THR93 CYS94 MET95 LEU96 ARG97 ASN98 THR99 THR100 TYR101 CYS102 SER103 LYS104 VAL105 ALA106 PHE107 PRO108 LEU109 GLU110 VAL111 VAL112 GLN113 LYS114 ASP115 SER116 CYS117 PHE118 ASN119 SER120 PRO121 MET122 LYS123 LEU124 PRO125 VAL126 HIS127 LYS128 LEU129 TYR130 ILE131 GLU132 TYR133 GLY134 ILE135 GLN136 ARG137 ILE138 THR139 CYS140 PRO141 ASN142 VAL143 ASP144 GLY145 TYR146 PHE147 PRO148 SER149 SER150 VAL151 LYS152 PRO153 THR154 ILE155 THR156 TRP157 TYR158 MET159 GLY160 CYS161 TYR162 LYS163 ILE164 GLN165 ASN166 PHE167 ASN168 ASN169 VAL170 ILE171 PRO172 GLU173 GLY174 MET175 ASN176 LEU177 SER178 PHE179 LEU180 ILE181 ALA182 LEU183 ILE184 SER185 ASN186 ASN187 GLY188 ASN189 TYR190 THR191 CYS192 VAL193 VAL194 THR195 TYR196 PRO197 GLU198 ASN199 GLY200 ARG201 THR202 PHE203 HIS204 LEU205 THR206 ARG207 THR208 LEU209 THR210 VAL211 LYS212 VAL213 VAL214 GLY215 SER216 PRO217 LYS218 ASN219 ALA220 VAL221 PRO222 PRO223 VAL224 ILE225 HIS226 LEU243 ILE244 PRO245 CYS246 THR247 VAL248 TYR249 PHE250 SER251 PHE252 LEU253 MET254 ASP255 SER256 ARG257 ASN258 GLU259 VAL260 TRP261 TRP262 THR263 ILE264 ASP265 GLY266 LYS267 VAL276 THR277 ILE278 ASN279 GLU280 SER281 ILE282 SER283 HIS284 SER285 ARG286 THR287 GLU288 ASP289 GLU290 THR291 ARG292 THR293 GLN294 ILE295 LEU296 TYR310 VAL311 CYS312 HIS313 ALA314 ARG315 SER316 ALA317 LYS318 GLY319 GLU320 VAL321 ALA322 LYS323 ALA324 ALA325 LYS326
Unit 4 SER0 ALA1 PRO2 VAL3 ARG4 SER5 LEU6 ASN7 CYS8 THR9 LEU10 ARG11 ASP12 SER13 GLN14 GLN15 LYS16 SER17 LEU18 VAL19 MET20 SER21 GLY22 PRO23 TYR24 GLU25 LEU26 LYS27 ALA28 LEU29 HIS30 LEU31 GLN32 GLY33 GLN34 ASP35 MET36 GLU37 GLN38 GLN39 VAL40 VAL41 PHE42 SER43 MET44 SER45 PHE46 VAL47 GLN48 GLY49 GLU50 GLU51 SER52 ASN53 ASP54 LYS55 ILE56 PRO57 VAL58 ALA59 LEU60 GLY61 LEU62 LYS63 GLU64 LYS65 ASN66 LEU67 TYR68 LEU69 SER70 CYS71 VAL72 LEU73 LYS74 ASP75 ASP76 LYS77 PRO78 THR79 LEU80 GLN81 LEU82 GLU83 SER84 VAL85 ASP86 PRO87 LYS88 ASN89 TYR90 PRO91 LYS92 LYS93 LYS94 MET95 GLU96 LYS97 ARG98 PHE99 VAL100 PHE101 ASN102 LYS103 ILE104 GLU105 ILE106 ASN107 ASN108 LYS109 LEU110 GLU111 PHE112 GLU113 SER114 ALA115 GLN116 PHE117 PRO118 ASN119 TRP120 TYR121 ILE122 SER123 THR124 SER125 GLN126 ALA127 GLU128 ASN129 MET130 PRO131 VAL132 PHE133 LEU134 GLY135 GLY136 THR137 LYS138 GLY139 GLY140 GLN141 ASP142 ILE143 THR144 ASP145 PHE146 THR147 MET148 GLN149 PHE150 VAL151
Unit 5 CYS6 LYS7 GLU8 ARG9 GLU10 GLU11 LYS12 ILE13 ILE14 LEU15 VAL16 SER17 SER18 ALA19 ASN20 GLU21 ILE22 ASP23 VAL24 ARG25 PRO26 CYS27 PRO28 LEU29 ASN30 PRO31 ASN32 GLU33 HIS34 THR37 ILE38 THR39 TRP40 TYR41 LYS42 ASP43 ASP44 SER45 LYS46 THR47 PRO48 VAL49 SER50 THR51 GLU52 GLN53 ALA54 SER55 ARG56 ILE57 HIS58 GLN59 HIS60 LYS61 GLU62 LYS63 LEU64 TRP65 PHE66 VAL67 PRO68 ALA69 LYS70 VAL71 GLU72 ASP73 SER74 GLY75 HIS76 TYR77 TYR78 CYS79 VAL80 VAL81 ARG82 ASN83 SER84 SER85 TYR86 CYS87 LEU88 ARG89 ILE90 LYS91 ILE92 SER93 ALA94 LYS95 PHE96 VAL97 GLU98 ASN99 GLU100 PRO101 ASN102 LEU103 CYS104 TYR105 ASN106 ALA107 GLN108 ALA109 ILE110 PHE111 LYS112 GLN113 LYS114 LEU115 PRO116 VAL117 ALA118 GLY119 ASP120 GLY121 GLY122 LEU123 VAL124 CYS125 PRO126 TYR127 MET128 GLU129 PHE130 PHE131 LYS132 ASN133 GLU134 ASN135 ASN136 GLU137 LEU138 PRO139 LYS140 LEU141 GLN142 TRP143 TYR144 LYS145 ASP146 CYS147 LYS148 PRO149 LEU150 LEU151 LEU152 ASP153 ASN154 ILE155 HIS156 PHE157 SER158 GLY159 VAL160 LYS161 ASP162 ARG163 LEU164 ILE165 VAL166 MET167 ASN168 VAL169 ALA170 GLU171 LYS172 HIS173 ARG174 GLY175 ASN176 TYR177 THR178 CYS179 HIS180 ALA181 SER182 TYR183 THR184 TYR185 LEU186 GLY187 LYS188 GLN189 TYR190 PRO191 ILE192 THR193 ARG194 VAL195 ILE196 GLU197 PHE198 ILE199 THR200 LEU201 GLU202 GLU203 ASN204 LYS205 PRO206 THR207 ARG208 PRO209 VAL210 ILE211 VAL212 SER213 PRO214 ALA215 ASN216 GLU217 THR218 MET219 GLU220 VAL221 ASP222 LEU223 GLY224 SER225 GLN226 ILE227 GLN228 LEU229 ILE230 CYS231 ASN232 VAL233 THR234 GLY235 GLN236 LEU237 SER238 ASP239 ILE240 ALA241 TYR242 TRP243 LYS244 TRP245 ASN246 GLY247 SER248 VAL249 ILE250 ASP251 GLU252 ASP253 ASP254 PRO255 VAL256 LEU257 GLY258 GLU259 ASP260 TYR261 TYR262 SER263 VAL264 GLU265 ASN266 PRO267 ALA268 ASN269 LYS270 ARG271 ARG272 SER273 THR274 LEU275 ILE276 THR277 VAL278 LEU279 ASN280 ILE281 SER282 GLU283 ILE284 GLU285 SER286 ARG287 PHE288 TYR289 LYS290 HIS291 PRO292 PHE293 THR294 CYS295 PHE296 ALA297 LYS298 ASN299 THR300 HIS301 GLY302 ILE303 ASP304 ALA305 ALA306 TYR307 ILE308 GLN309 LEU310 ILE311 TYR312 PRO313 VAL314
Unit 6 ASP5 ASP6 TRP7 GLY8 LEU9 ASP10 THR11 MET12 ARG13 GLN14 ILE15 GLN16 VAL17 PHE18 GLU19 ASP20 GLU21 PRO22 ALA23 ARG24 ILE25 LYS26 CYS27 PRO28 LEU29 PHE30 GLU31 HIS32 PHE33 LEU34 LYS35 PHE36 ASN37 TYR38 SER39 THR40 ALA41 HIS42 SER43 ALA44 GLY45 LEU46 THR47 LEU48 ILE49 TRP50 TYR51 TRP52 THR53 ARG54 ASP58 LEU59 GLU60 GLU61 LEU67 PRO68 GLU69 ASN70 ARG71 ILE72 SER73 LYS74 GLU75 LYS76 ASP77 VAL78 LEU79 TRP80 PHE81 ARG82 PRO83 THR84 LEU85 LEU86 ASN87 ASP88 THR89 GLY90 ASN91 TYR92 THR93 CYS94 MET95 LEU96 ARG97 ASN98 THR99 THR100 TYR101 CYS102 SER103 LYS104 VAL105 ALA106 PHE107 PRO108 LEU109 GLU110 VAL111 VAL112 GLN113 LYS114 ASP115 SER116 CYS117 PHE118 ASN119 SER120 PRO121 MET122 LYS123 LEU124 PRO125 VAL126 HIS127 LYS128 LEU129 TYR130 ILE131 GLU132 TYR133 GLY134 ILE135 GLN136 ARG137 ILE138 THR139 CYS140 PRO141 ASN142 VAL143 ASP144 GLY145 TYR146 PHE147 PRO148 SER149 SER150 VAL151 LYS152 PRO153 THR154 ILE155 THR156 TRP157 TYR158 MET159 GLY160 CYS161 TYR162 LYS163 ILE164 GLN165 ASN166 PHE167 ASN168 ASN169 VAL170 ILE171 PRO172 GLU173 GLY174 MET175 ASN176 LEU177 SER178 PHE179 LEU180 ILE181 ALA182 LEU183 ILE184 SER185 ASN186 ASN187 GLY188 ASN189 TYR190 THR191 CYS192 VAL193 VAL194 THR195 TYR196 PRO197 GLY200 ARG201 THR202 PHE203 HIS204 LEU205 THR206 ARG207 THR208 LEU209 THR210 VAL211 LYS212 VAL213 VAL214 GLY215 SER216 PRO217 LYS218 ASN219 ALA220 VAL221 PRO222 PRO223 VAL224 ILE225 HIS226 SER227 PRO228 ASN229 ASP230 HIS231 VAL232 VAL233 TYR234 GLU235 LEU243 ILE244 PRO245 CYS246 THR247 VAL248 TYR249 PHE250 SER251 PHE252 LEU253 MET254 ASP255 SER256 ARG257 ASN258 GLU259 VAL260 TRP261 TRP262 THR263 ILE264 ASP265 THR277 ILE278 ASN279 GLU280 SER281 ILE282 SER283 HIS284 SER285 ARG286 THR287 GLU288 ASP289 GLU290 THR291 ARG292 THR293 GLN294 ILE295 LEU296 SER297 ASP305 LEU306 LYS307 ARG308 SER309 TYR310 VAL311 CYS312 HIS313 ALA314 ARG315 SER316 ALA317 LYS318 GLY319 GLU320 VAL321 ALA322 LYS323 ALA324 ALA325 LYS326 VAL327 LYS328

Ligands
Unit 7 NAG401 NAG402 NAG403
Unit 8 NAG401 NAG402 NAG403 NAG404
Unit 9 NAG401 NAG402 NAG403 NAG404
Unit 10 NAG401 NAG402 NAG403

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany