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Sequence, Chains, Asymmetric and Biological Units

Title MSS116P DEAD-BOX HELICASE DOMAIN 2 BOUND TO AN RNA DUPLEX
Keywords DEAD-BOX, RNA HELICASE, HYDROLASE, RNA BINDING PROTEIN-RNA C
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4DB2     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ATP-DEPENDENT RNA HELICASE MSS116, MITOCHONDRIAL  A 256 3842 0
2  Protein   ATP-DEPENDENT RNA HELICASE MSS116, MITOCHONDRIAL  B 256 3912 0
3  Protein   ATP-DEPENDENT RNA HELICASE MSS116, MITOCHONDRIAL  C 256 3892 0
4  Protein   ATP-DEPENDENT RNA HELICASE MSS116, MITOCHONDRIAL  D 237 3662 0
5  RNA    E 14 454 0
6  RNA    F 14 454 0
7  RNA    G 13 411 0
8  RNA    H 14 454 0
9  RNA    I 14 454 0
10  RNA    J 14 454 0
total       1088 17989 0
Proteins
Unit 1 SER341 ILE342 ASP343 GLN344 SER345 VAL346 VAL347 ILE348 SER349 GLU350 LYS351 PHE352 ALA353 ASN354 SER355 ILE356 PHE357 ALA358 ALA359 VAL360 GLU361 HIS362 ILE363 LYS364 LYS365 GLN366 ILE367 LYS368 GLU369 ARG370 ASP371 SER372 ASN373 TYR374 LYS375 ALA376 ILE377 ILE378 PHE379 ALA380 PRO381 THR382 VAL383 LYS384 PHE385 THR386 SER387 PHE388 LEU389 CYS390 SER391 ILE392 LEU393 LYS394 ASN395 GLU396 PHE397 LYS398 LYS399 ASP400 LEU401 PRO402 ILE403 LEU404 GLU405 PHE406 HIS407 GLY408 LYS409 ILE410 THR411 GLN412 ASN413 LYS414 ARG415 THR416 SER417 LEU418 VAL419 LYS420 ARG421 PHE422 LYS423 LYS424 ASP425 GLU426 SER427 GLY428 ILE429 LEU430 VAL431 CYS432 THR433 ASP434 VAL435 GLY436 ALA437 ARG438 GLY439 MET440 ASP441 PHE442 PRO443 ASN444 VAL445 HIS446 GLU447 VAL448 LEU449 GLN450 ILE451 GLY452 VAL453 PRO454 SER455 GLU456 LEU457 ALA458 ASN459 TYR460 ILE461 HIS462 ARG463 ILE464 GLY465 ARG466 THR467 ALA468 ARG469 SER470 GLY471 LYS472 GLU473 GLY474 SER475 SER476 VAL477 LEU478 PHE479 ILE480 CYS481 LYS482 ASP483 GLU484 LEU485 PRO486 PHE487 VAL488 ARG489 GLU490 LEU491 GLU492 ASP493 ALA494 LYS495 ASN496 ILE497 VAL498 ILE499 ALA500 LYS501 GLN502 GLU503 LYS504 TYR505 GLU506 PRO507 SER508 GLU509 GLU510 ILE511 LYS512 SER513 GLU514 VAL515 LEU516 GLU517 ALA518 VAL519 THR520 GLU521 GLU522 PRO523 GLU524 ASP525 ILE526 SER527 ASP528 ILE529 VAL530 ILE531 SER532 LEU533 ILE534 SER535 SER536 TYR537 ARG538 SER539 CYS540 ILE541 LYS542 GLU543 TYR544 ARG545 PHE546 SER547 GLU548 ARG549 ARG550 ILE551 LEU552 PRO553 GLU554 ILE555 ALA556 SER557 THR558 TYR559 GLY560 VAL561 LEU562 LEU563 ASN564 ASP565 PRO566 GLN567 LEU568 LYS569 ILE570 PRO571 VAL572 SER573 ARG574 ARG575 PHE576 LEU577 ASP578 LYS579 LEU580 GLY581 LEU582 SER583 ARG584 SER585 PRO586 ILE587 GLY588 LYS589 ALA590 MET591 PHE592 GLU593 ILE594 ARG595 ASP596
Unit 2 SER341 ILE342 ASP343 GLN344 SER345 VAL346 VAL347 ILE348 SER349 GLU350 LYS351 PHE352 ALA353 ASN354 SER355 ILE356 PHE357 ALA358 ALA359 VAL360 GLU361 HIS362 ILE363 LYS364 LYS365 GLN366 ILE367 LYS368 GLU369 ARG370 ASP371 SER372 ASN373 TYR374 LYS375 ALA376 ILE377 ILE378 PHE379 ALA380 PRO381 THR382 VAL383 LYS384 PHE385 THR386 SER387 PHE388 LEU389 CYS390 SER391 ILE392 LEU393 LYS394 ASN395 GLU396 PHE397 LYS398 LYS399 ASP400 LEU401 PRO402 ILE403 LEU404 GLU405 PHE406 HIS407 GLY408 LYS409 ILE410 THR411 GLN412 ASN413 LYS414 ARG415 THR416 SER417 LEU418 VAL419 LYS420 ARG421 PHE422 LYS423 LYS424 ASP425 GLU426 SER427 GLY428 ILE429 LEU430 VAL431 CYS432 THR433 ASP434 VAL435 GLY436 ALA437 ARG438 GLY439 MET440 ASP441 PHE442 PRO443 ASN444 VAL445 HIS446 GLU447 VAL448 LEU449 GLN450 ILE451 GLY452 VAL453 PRO454 SER455 GLU456 LEU457 ALA458 ASN459 TYR460 ILE461 HIS462 ARG463 ILE464 GLY465 ARG466 THR467 ALA468 ARG469 SER470 GLY471 LYS472 GLU473 GLY474 SER475 SER476 VAL477 LEU478 PHE479 ILE480 CYS481 LYS482 ASP483 GLU484 LEU485 PRO486 PHE487 VAL488 ARG489 GLU490 LEU491 GLU492 ASP493 ALA494 LYS495 ASN496 ILE497 VAL498 ILE499 ALA500 LYS501 GLN502 GLU503 LYS504 TYR505 GLU506 PRO507 SER508 GLU509 GLU510 ILE511 LYS512 SER513 GLU514 VAL515 LEU516 GLU517 ALA518 VAL519 THR520 GLU521 GLU522 PRO523 GLU524 ASP525 ILE526 SER527 ASP528 ILE529 VAL530 ILE531 SER532 LEU533 ILE534 SER535 SER536 TYR537 ARG538 SER539 CYS540 ILE541 LYS542 GLU543 TYR544 ARG545 PHE546 SER547 GLU548 ARG549 ARG550 ILE551 LEU552 PRO553 GLU554 ILE555 ALA556 SER557 THR558 TYR559 GLY560 VAL561 LEU562 LEU563 ASN564 ASP565 PRO566 GLN567 LEU568 LYS569 ILE570 PRO571 VAL572 SER573 ARG574 ARG575 PHE576 LEU577 ASP578 LYS579 LEU580 GLY581 LEU582 SER583 ARG584 SER585 PRO586 ILE587 GLY588 LYS589 ALA590 MET591 PHE592 GLU593 ILE594 ARG595 ASP596
Unit 3 ILE342 ASP343 GLN344 SER345 VAL346 VAL347 ILE348 SER349 GLU350 LYS351 PHE352 ALA353 ASN354 SER355 ILE356 PHE357 ALA358 ALA359 VAL360 GLU361 HIS362 ILE363 LYS364 LYS365 GLN366 ILE367 LYS368 GLU369 ARG370 ASP371 SER372 ASN373 TYR374 LYS375 ALA376 ILE377 ILE378 PHE379 ALA380 PRO381 THR382 VAL383 LYS384 PHE385 THR386 SER387 PHE388 LEU389 CYS390 SER391 ILE392 LEU393 LYS394 ASN395 GLU396 PHE397 LYS398 LYS399 ASP400 LEU401 PRO402 ILE403 LEU404 GLU405 PHE406 HIS407 GLY408 LYS409 ILE410 THR411 GLN412 ASN413 LYS414 ARG415 THR416 SER417 LEU418 VAL419 LYS420 ARG421 PHE422 LYS423 LYS424 ASP425 GLU426 SER427 GLY428 ILE429 LEU430 VAL431 CYS432 THR433 ASP434 VAL435 GLY436 ALA437 ARG438 GLY439 MET440 ASP441 PHE442 PRO443 ASN444 VAL445 HIS446 GLU447 VAL448 LEU449 GLN450 ILE451 GLY452 VAL453 PRO454 SER455 GLU456 LEU457 ALA458 ASN459 TYR460 ILE461 HIS462 ARG463 ILE464 GLY465 ARG466 THR467 ALA468 ARG469 SER470 GLY471 LYS472 GLU473 GLY474 SER475 SER476 VAL477 LEU478 PHE479 ILE480 CYS481 LYS482 ASP483 GLU484 LEU485 PRO486 PHE487 VAL488 ARG489 GLU490 LEU491 GLU492 ASP493 ALA494 LYS495 ASN496 ILE497 VAL498 ILE499 ALA500 LYS501 GLN502 GLU503 LYS504 TYR505 GLU506 PRO507 SER508 GLU509 GLU510 ILE511 LYS512 SER513 GLU514 VAL515 LEU516 GLU517 ALA518 VAL519 THR520 GLU521 GLU522 PRO523 GLU524 ASP525 ILE526 SER527 ASP528 ILE529 VAL530 ILE531 SER532 LEU533 ILE534 SER535 SER536 TYR537 ARG538 SER539 CYS540 ILE541 LYS542 GLU543 TYR544 ARG545 PHE546 SER547 GLU548 ARG549 ARG550 ILE551 LEU552 PRO553 GLU554 ILE555 ALA556 SER557 THR558 TYR559 GLY560 VAL561 LEU562 LEU563 ASN564 ASP565 PRO566 GLN567 LEU568 LYS569 ILE570 PRO571 VAL572 SER573 ARG574 ARG575 PHE576 LEU577 ASP578 LYS579 LEU580 GLY581 LEU582 SER583 ARG584 SER585 PRO586 ILE587 GLY588 LYS589 ALA590 MET591 PHE592 GLU593 ILE594 ARG595 ASP596 TYR597
Unit 4 ILE342 ASP343 GLN344 SER345 VAL346 VAL347 ILE348 SER349 GLU350 LYS351 PHE352 ALA353 ASN354 SER355 ILE356 PHE357 ALA358 ALA359 VAL360 GLU361 HIS362 ILE363 LYS364 LYS365 GLN366 ILE367 LYS368 GLU369 ARG370 ASP371 SER372 ASN373 TYR374 LYS375 ALA376 ILE377 ILE378 PHE379 ALA380 PRO381 THR382 VAL383 LYS384 PHE385 THR386 SER387 PHE388 LEU389 CYS390 SER391 ILE392 LEU393 LYS394 ASN395 GLU396 PHE397 LYS398 LYS399 ASP400 LEU401 PRO402 ILE403 LEU404 GLU405 PHE406 HIS407 GLY408 LYS409 ILE410 THR411 GLN412 ASN413 LYS414 ARG415 THR416 SER417 LEU418 VAL419 LYS420 ARG421 PHE422 LYS423 LYS424 ASP425 GLU426 SER427 GLY428 ILE429 LEU430 VAL431 CYS432 THR433 ASP434 VAL435 VAL445 HIS446 GLU447 VAL448 LEU449 GLN450 ILE451 GLY452 VAL453 PRO454 SER455 GLU456 LEU457 ALA458 ASN459 TYR460 ILE461 HIS462 ARG463 ILE464 GLY465 SER476 VAL477 LEU478 PHE479 ILE480 CYS481 LYS482 ASP483 GLU484 LEU485 PRO486 PHE487 VAL488 ARG489 GLU490 LEU491 GLU492 ASP493 ALA494 LYS495 ASN496 ILE497 VAL498 ILE499 ALA500 LYS501 GLN502 GLU503 LYS504 TYR505 GLU506 PRO507 SER508 GLU509 GLU510 ILE511 LYS512 SER513 GLU514 VAL515 LEU516 GLU517 ALA518 VAL519 THR520 GLU521 GLU522 PRO523 GLU524 ASP525 ILE526 SER527 ASP528 ILE529 VAL530 ILE531 SER532 LEU533 ILE534 SER535 SER536 TYR537 ARG538 SER539 CYS540 ILE541 LYS542 GLU543 TYR544 ARG545 PHE546 SER547 GLU548 ARG549 ARG550 ILE551 LEU552 PRO553 GLU554 ILE555 ALA556 SER557 THR558 TYR559 GLY560 VAL561 LEU562 LEU563 ASN564 ASP565 PRO566 GLN567 LEU568 LYS569 ILE570 PRO571 VAL572 SER573 ARG574 ARG575 PHE576 LEU577 ASP578 LYS579 LEU580 GLY581 LEU582 SER583 ARG584 SER585 PRO586 ILE587 GLY588 LYS589 ALA590 MET591 PHE592 GLU593 ILE594 ARG595 ASP596 TYR597
Nucleic acids
Unit 5 G-3 G-2 G-1 C0 G1 G2 G3 C4 C5 C6 G7 C8 C9 C10
Unit 6 G0 G1 G2 C3 G4 G5 G6 C7 C8 C9 G10 C11 C12 C13
Unit 7 G1 G2 G3 C4 G5 G6 G7 C8 C9 C10 G11 C12 C13
Unit 8 G1 G2 G3 C4 G5 G6 G7 C8 C9 C10 G11 C12 C13 C14
Unit 9 G-2 G-1 G0 C1 G2 G3 G4 C5 C6 C7 G8 C9 C10 C11
Unit 10 G-1 G0 G1 C2 G3 G4 G5 C6 C7 C8 G9 C10 C11 C12
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany