4D8C - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF HUMAN BETA SECRETASE IN COMPLEX WITH NV DERIVED FROM A CO-CRYSTALLIZATION EXPERIMENT
• Keywords: BETA-SECRETASE, MEMAPSIN2, BACE1, ASPARTIC PROTEINASE, ALZHE DISEASE, ENZYME INHIBITOR COMPLEX, STRUCTURE-BASED DRUG DES HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4D8C	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	BETA-SECRETASE 1	A	377	2966	0
2	Protein	BETA-SECRETASE 1	B	377	2966	0
3	Protein	BETA-SECRETASE 1	C	381	2993	0
4	Ligand	BETA-SECRETASE 1	A	1	0	40
5	Ligand	BETA-SECRETASE 1	B	2	0	45
6	Ligand	BETA-SECRETASE 1	C	2	0	45
7	Water			704	0	704
total				1844	8925	834

Proteins

Unit 1	SER -2 PHE -1 VAL 0 GLU 1 MET 2 VAL 3 ASP 4 ASN 5 LEU 6 ARG 7 GLY 8 LYS 9 SER 10 GLY 11 GLN 12 GLY 13 TYR 14 TYR 15 VAL 16 GLU 17 MET 18 THR 19 VAL 20 GLY 21 SER 22 PRO 23 PRO 24 GLN 25 THR 26 LEU 27 ASN 28 ILE 29 LEU 30 VAL 31 ASP 32 THR 33 GLY 34 SER 35 SER 36 ASN 37 PHE 38 ALA 39 VAL 40 GLY 41 ALA 42 ALA 43 PRO 44 HIS 45 PRO 46 PHE 47 LEU 48 HIS 49 ARG 50 TYR 51 TYR 52 GLN 53 ARG 54 GLN 55 LEU 56 SER 57 SER 58 THR 59 TYR 60 ARG 61 ASP 62 LEU 63 ARG 64 LYS 65 GLY 66 VAL 67 TYR 68 VAL 69 PRO 70 TYR 71 THR 72 GLN 73 GLY 74 LYS 75 TRP 76 GLU 77 GLY 78 GLU 79 LEU 80 GLY 81 THR 82 ASP 83 LEU 84 VAL 85 SER 86 ILE 87 PRO 88 HIS 89 GLY 90 PRO 91 ASN 92 VAL 93 THR 94 VAL 95 ARG 96 ALA 97 ASN 98 ILE 99 ALA 100 ALA 101 ILE 102 THR 103 GLU 104 SER 105 ASP 106 LYS 107 PHE 108 PHE 109 ILE 110 ASN 111 GLY 112 SER 113 ASN 114 TRP 115 GLU 116 GLY 117 ILE 118 LEU 119 GLY 120 LEU 121 ALA 122 TYR 123 ALA 124 GLU 125 ILE 126 ALA 127 ARG 128 PRO 129 ASP 130 ASP 131 SER 132 LEU 133 GLU 134 PRO 135 PHE 136 PHE 137 ASP 138 SER 139 LEU 140 VAL 141 LYS 142 GLN 143 THR 144 HIS 145 VAL 146 PRO 147 ASN 148 LEU 149 PHE 150 SER 151 LEU 152 GLN 153 LEU 154 CYS 155 GLY 156 ALA 157 SER 158 VAL 159 GLY 160 GLY 161 SER 162 MET 163 ILE 164 ILE 165 GLY 166 GLY 167 ILE 168 ASP 169 HIS 170 SER 171 LEU 172 TYR 173 THR 174 GLY 175 SER 176 LEU 177 TRP 178 TYR 179 THR 180 PRO 181 ILE 182 ARG 183 ARG 184 GLU 185 TRP 186 TYR 187 TYR 188 GLU 189 VAL 190 ILE 191 ILE 192 VAL 193 ARG 194 VAL 195 GLU 196 ILE 197 ASN 198 GLY 199 GLN 200 ASP 201 LEU 202 LYS 203 MET 204 ASP 205 CYS 206 LYS 207 GLU 208 TYR 209 ASN 210 TYR 211 ASP 212 LYS 213 SER 214 ILE 215 VAL 216 ASP 217 SER 218 GLY 219 THR 220 THR 221 ASN 222 LEU 223 ARG 224 LEU 225 PRO 226 LYS 227 LYS 228 VAL 229 PHE 230 GLU 231 ALA 232 ALA 233 VAL 234 LYS 235 SER 236 ILE 237 LYS 238 ALA 239 ALA 240 SER 241 SER 242 THR 243 GLU 244 LYS 245 PHE 246 PRO 247 ASP 248 GLY 249 PHE 250 TRP 251 LEU 252 GLY 253 GLU 254 GLN 255 LEU 256 VAL 257 CYS 258 TRP 259 GLN 260 ALA 261 GLY 262 THR 263 THR 264 PRO 265 TRP 266 ASN 267 ILE 268 PHE 269 PRO 270 VAL 271 ILE 272 SER 273 LEU 274 TYR 275 LEU 276 MET 277 GLY 278 GLU 279 VAL 280 THR 281 ASN 282 GLN 283 SER 284 PHE 285 ARG 286 ILE 287 THR 288 ILE 289 LEU 290 PRO 291 GLN 292 GLN 293 TYR 294 LEU 295 ARG 296 PRO 297 VAL 298 GLU 299 ASP 300 VAL 301 ALA 302 THR 303 SER 304 GLN 305 ASP 306 ASP 307 CYS 308 TYR 309 LYS 310 PHE 311 ALA 312 ILE 313 SER 314 GLN 315 SER 316 SER 317 THR 318 GLY 319 THR 320 VAL 321 MET 322 GLY 323 ALA 324 VAL 325 ILE 326 MET 327 GLU 328 GLY 329 PHE 330 TYR 331 VAL 332 VAL 333 PHE 334 ASP 335 ARG 336 ALA 337 ARG 338 LYS 339 ARG 340 ILE 341 GLY 342 PHE 343 ALA 344 VAL 345 SER 346 ALA 347 CYS 348 HIS 349 VAL 350 HIS 351 ASP 352 GLU 353 PHE 354 ARG 355 THR 356 ALA 357 ALA 358 VAL 359 GLU 360 GLY 361 PRO 362 PHE 363 VAL 364 THR 365 LEU 366 ASP 367 MET 368 GLU 369 ASP 370 CYS 371 GLY 372 TYR 373 ASN 374
Unit 2	SER -2 PHE -1 VAL 0 GLU 1 MET 2 VAL 3 ASP 4 ASN 5 LEU 6 ARG 7 GLY 8 LYS 9 SER 10 GLY 11 GLN 12 GLY 13 TYR 14 TYR 15 VAL 16 GLU 17 MET 18 THR 19 VAL 20 GLY 21 SER 22 PRO 23 PRO 24 GLN 25 THR 26 LEU 27 ASN 28 ILE 29 LEU 30 VAL 31 ASP 32 THR 33 GLY 34 SER 35 SER 36 ASN 37 PHE 38 ALA 39 VAL 40 GLY 41 ALA 42 ALA 43 PRO 44 HIS 45 PRO 46 PHE 47 LEU 48 HIS 49 ARG 50 TYR 51 TYR 52 GLN 53 ARG 54 GLN 55 LEU 56 SER 57 SER 58 THR 59 TYR 60 ARG 61 ASP 62 LEU 63 ARG 64 LYS 65 GLY 66 VAL 67 TYR 68 VAL 69 PRO 70 TYR 71 THR 72 GLN 73 GLY 74 LYS 75 TRP 76 GLU 77 GLY 78 GLU 79 LEU 80 GLY 81 THR 82 ASP 83 LEU 84 VAL 85 SER 86 ILE 87 PRO 88 HIS 89 GLY 90 PRO 91 ASN 92 VAL 93 THR 94 VAL 95 ARG 96 ALA 97 ASN 98 ILE 99 ALA 100 ALA 101 ILE 102 THR 103 GLU 104 SER 105 ASP 106 LYS 107 PHE 108 PHE 109 ILE 110 ASN 111 GLY 112 SER 113 ASN 114 TRP 115 GLU 116 GLY 117 ILE 118 LEU 119 GLY 120 LEU 121 ALA 122 TYR 123 ALA 124 GLU 125 ILE 126 ALA 127 ARG 128 PRO 129 ASP 130 ASP 131 SER 132 LEU 133 GLU 134 PRO 135 PHE 136 PHE 137 ASP 138 SER 139 LEU 140 VAL 141 LYS 142 GLN 143 THR 144 HIS 145 VAL 146 PRO 147 ASN 148 LEU 149 PHE 150 SER 151 LEU 152 GLN 153 LEU 154 CYS 155 GLY 156 ALA 157 SER 158 VAL 159 GLY 160 GLY 161 SER 162 MET 163 ILE 164 ILE 165 GLY 166 GLY 167 ILE 168 ASP 169 HIS 170 SER 171 LEU 172 TYR 173 THR 174 GLY 175 SER 176 LEU 177 TRP 178 TYR 179 THR 180 PRO 181 ILE 182 ARG 183 ARG 184 GLU 185 TRP 186 TYR 187 TYR 188 GLU 189 VAL 190 ILE 191 ILE 192 VAL 193 ARG 194 VAL 195 GLU 196 ILE 197 ASN 198 GLY 199 GLN 200 ASP 201 LEU 202 LYS 203 MET 204 ASP 205 CYS 206 LYS 207 GLU 208 TYR 209 ASN 210 TYR 211 ASP 212 LYS 213 SER 214 ILE 215 VAL 216 ASP 217 SER 218 GLY 219 THR 220 THR 221 ASN 222 LEU 223 ARG 224 LEU 225 PRO 226 LYS 227 LYS 228 VAL 229 PHE 230 GLU 231 ALA 232 ALA 233 VAL 234 LYS 235 SER 236 ILE 237 LYS 238 ALA 239 ALA 240 SER 241 SER 242 THR 243 GLU 244 LYS 245 PHE 246 PRO 247 ASP 248 GLY 249 PHE 250 TRP 251 LEU 252 GLY 253 GLU 254 GLN 255 LEU 256 VAL 257 CYS 258 TRP 259 GLN 260 ALA 261 GLY 262 THR 263 THR 264 PRO 265 TRP 266 ASN 267 ILE 268 PHE 269 PRO 270 VAL 271 ILE 272 SER 273 LEU 274 TYR 275 LEU 276 MET 277 GLY 278 GLU 279 VAL 280 THR 281 ASN 282 GLN 283 SER 284 PHE 285 ARG 286 ILE 287 THR 288 ILE 289 LEU 290 PRO 291 GLN 292 GLN 293 TYR 294 LEU 295 ARG 296 PRO 297 VAL 298 GLU 299 ASP 300 VAL 301 ALA 302 THR 303 SER 304 GLN 305 ASP 306 ASP 307 CYS 308 TYR 309 LYS 310 PHE 311 ALA 312 ILE 313 SER 314 GLN 315 SER 316 SER 317 THR 318 GLY 319 THR 320 VAL 321 MET 322 GLY 323 ALA 324 VAL 325 ILE 326 MET 327 GLU 328 GLY 329 PHE 330 TYR 331 VAL 332 VAL 333 PHE 334 ASP 335 ARG 336 ALA 337 ARG 338 LYS 339 ARG 340 ILE 341 GLY 342 PHE 343 ALA 344 VAL 345 SER 346 ALA 347 CYS 348 HIS 349 VAL 350 HIS 351 ASP 352 GLU 353 PHE 354 ARG 355 THR 356 ALA 357 ALA 358 VAL 359 GLU 360 GLY 361 PRO 362 PHE 363 VAL 364 THR 365 LEU 366 ASP 367 MET 368 GLU 369 ASP 370 CYS 371 GLY 372 TYR 373 ASN 374
Unit 3	SER -2 PHE -1 VAL 0 GLU 1 MET 2 VAL 3 ASP 4 ASN 5 LEU 6 ARG 7 GLY 8 LYS 9 SER 10 GLY 11 GLN 12 GLY 13 TYR 14 TYR 15 VAL 16 GLU 17 MET 18 THR 19 VAL 20 GLY 21 SER 22 PRO 23 PRO 24 GLN 25 THR 26 LEU 27 ASN 28 ILE 29 LEU 30 VAL 31 ASP 32 THR 33 GLY 34 SER 35 SER 36 ASN 37 PHE 38 ALA 39 VAL 40 GLY 41 ALA 42 ALA 43 PRO 44 HIS 45 PRO 46 PHE 47 LEU 48 HIS 49 ARG 50 TYR 51 TYR 52 GLN 53 ARG 54 GLN 55 LEU 56 SER 57 SER 58 THR 59 TYR 60 ARG 61 ASP 62 LEU 63 ARG 64 LYS 65 GLY 66 VAL 67 TYR 68 VAL 69 PRO 70 TYR 71 THR 72 GLN 73 GLY 74 LYS 75 TRP 76 GLU 77 GLY 78 GLU 79 LEU 80 GLY 81 THR 82 ASP 83 LEU 84 VAL 85 SER 86 ILE 87 PRO 88 HIS 89 GLY 90 PRO 91 ASN 92 VAL 93 THR 94 VAL 95 ARG 96 ALA 97 ASN 98 ILE 99 ALA 100 ALA 101 ILE 102 THR 103 GLU 104 SER 105 ASP 106 LYS 107 PHE 108 PHE 109 ILE 110 ASN 111 GLY 112 SER 113 ASN 114 TRP 115 GLU 116 GLY 117 ILE 118 LEU 119 GLY 120 LEU 121 ALA 122 TYR 123 ALA 124 GLU 125 ILE 126 ALA 127 ARG 128 PRO 129 ASP 130 ASP 131 SER 132 LEU 133 GLU 134 PRO 135 PHE 136 PHE 137 ASP 138 SER 139 LEU 140 VAL 141 LYS 142 GLN 143 THR 144 HIS 145 VAL 146 PRO 147 ASN 148 LEU 149 PHE 150 SER 151 LEU 152 GLN 153 LEU 154 CYS 155 GLY 156 ALA 157 GLY 158 PHE 159 PRO 160 ALA 161 SER 162 VAL 163 GLY 164 GLY 165 SER 166 MET 167 ILE 168 ILE 169 GLY 170 GLY 171 ILE 172 ASP 173 HIS 174 SER 175 LEU 176 TYR 177 THR 178 GLY 179 SER 180 LEU 181 TRP 182 TYR 183 THR 184 PRO 185 ILE 186 ARG 187 ARG 188 GLU 189 TRP 190 TYR 191 TYR 192 GLU 193 VAL 194 ILE 195 ILE 196 VAL 197 ARG 198 VAL 199 GLU 200 ILE 201 ASN 202 GLY 203 GLN 204 ASP 205 LEU 206 LYS 207 MET 208 ASP 209 CYS 210 LYS 211 GLU 212 TYR 213 ASN 214 TYR 215 ASP 216 LYS 217 SER 218 ILE 219 VAL 220 ASP 221 SER 222 GLY 223 THR 224 THR 225 ASN 226 LEU 227 ARG 228 LEU 229 PRO 230 LYS 231 LYS 232 VAL 233 PHE 234 GLU 235 ALA 236 ALA 237 VAL 238 LYS 239 SER 240 ILE 241 LYS 242 ALA 243 ALA 244 SER 245 SER 246 THR 247 GLU 248 LYS 249 PHE 250 PRO 251 ASP 252 GLY 253 PHE 254 TRP 255 LEU 256 GLY 257 GLU 258 GLN 259 LEU 260 VAL 261 CYS 262 TRP 263 GLN 264 ALA 265 GLY 266 THR 267 THR 268 PRO 269 TRP 270 ASN 271 ILE 272 PHE 273 PRO 274 VAL 275 ILE 276 SER 277 LEU 278 TYR 279 LEU 280 MET 281 GLY 282 GLU 283 VAL 284 THR 285 ASN 286 GLN 287 SER 288 PHE 289 ARG 290 ILE 291 THR 292 ILE 293 LEU 294 PRO 295 GLN 296 GLN 297 TYR 298 LEU 299 ARG 300 PRO 301 VAL 302 GLU 303 ASP 304 VAL 305 ALA 306 THR 307 SER 308 GLN 309 ASP 310 ASP 311 CYS 312 TYR 313 LYS 314 PHE 315 ALA 316 ILE 317 SER 318 GLN 319 SER 320 SER 321 THR 322 GLY 323 THR 324 VAL 325 MET 326 GLY 327 ALA 328 VAL 329 ILE 330 MET 331 GLU 332 GLY 333 PHE 334 TYR 335 VAL 336 VAL 337 PHE 338 ASP 339 ARG 340 ALA 341 ARG 342 LYS 343 ARG 344 ILE 345 GLY 346 PHE 347 ALA 348 VAL 349 SER 350 ALA 351 CYS 352 HIS 353 VAL 354 HIS 355 ASP 356 GLU 357 PHE 358 ARG 359 THR 360 ALA 361 ALA 362 VAL 363 GLU 364 GLY 365 PRO 366 PHE 367 VAL 368 THR 369 LEU 370 ASP 371 MET 372 GLU 373 ASP 374 CYS 375 GLY 376 TYR 377 ASN 378

Ligands

Unit 4	BXD 501
Unit 5	BXD 501 SO4 502
Unit 6	BXD 401 SO4 402