4D25 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE BOMBYX MORI VASA HELICASE (E339Q) IN COMPLEX WITH RNA AND AMPPNP
• Keywords: HYDROLASE, PIRNA, AMPLIFIER COMPLEX, TRANSPOSON
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4D25	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	BMVLG PROTEIN	A	427	3336	0
2	RNA		D	6	128	0
3	Ligand	BMVLG PROTEIN	A	2	0	32
4	Ligand	5'-R(*UP*GP*AP*CP*AP*UP)-3'	D	1	0	6
5	Water			330	0	330
total				766	3464	368

Proteins

Unit 1

TYR 137 VAL 138 PRO 139 PRO 140 GLU 141 PRO 142 THR 143 ASN 144 ASP 145 GLU 146 THR 147 GLU 148 ILE 149 PHE 150 SER 151 SER 152 THR 153 ILE 154 SER 155 SER 156 GLY 157 ILE 158 ASN 159 PHE 160 ASP 161 LYS 162 PHE 163 ASP 164 HIS 165 ILE 166 ALA 167 VAL 168 LYS 169 VAL 170 SER 171 GLY 172 GLU 173 ASN 174 PRO 175 PRO 176 ARG 177 PRO 178 ILE 179 GLU 180 SER 181 PHE 182 GLU 183 THR 184 ALA 185 ASN 186 LEU 187 ARG 188 LYS 189 TYR 190 VAL 191 LEU 192 ASP 193 ASN 194 VAL 195 LEU 196 LYS 197 ALA 198 GLY 199 TYR 200 ARG 201 LYS 202 PRO 203 THR 204 PRO 205 ILE 206 GLN 207 LYS 208 ASN 209 ALA 210 ILE 211 PRO 212 ILE 213 ILE 214 MET 215 SER 216 GLY 217 ARG 218 ASP 219 LEU 220 MET 221 GLY 222 CYS 223 ALA 224 GLN 225 THR 226 GLY 227 SER 228 GLY 229 LYS 230 THR 231 ALA 232 ALA 233 PHE 234 LEU 235 VAL 236 PRO 237 ILE 238 ILE 239 ASN 240 MET 241 LEU 242 LEU 243 GLN 244 ASP 245 PRO 246 LYS 247 ASP 248 LEU 249 ILE 250 SER 251 GLU 252 ASN 253 GLY 254 CYS 255 ALA 256 GLN 257 PRO 258 GLN 259 VAL 260 ILE 261 ILE 262 VAL 263 SER 264 PRO 265 THR 266 ARG 267 GLU 268 LEU 269 THR 270 LEU 271 GLN 272 ILE 273 PHE 274 ASN 275 GLU 276 ALA 277 ARG 278 LYS 279 PHE 280 SER 281 TYR 282 GLY 283 SER 284 VAL 285 LEU 286 LYS 287 VAL 288 ALA 289 VAL 290 ALA 291 TYR 292 GLY 293 GLY 294 THR 295 ALA 296 VAL 297 ARG 298 HIS 299 GLN 300 GLY 301 ASP 302 ASN 303 ILE 304 ALA 305 ARG 306 GLY 307 CYS 308 HIS 309 ILE 310 LEU 311 VAL 312 ALA 313 THR 314 PRO 315 GLY 316 ARG 317 LEU 318 HIS 319 ASP 320 PHE 321 VAL 322 GLU 323 ARG 324 ASN 325 ARG 326 VAL 327 SER 328 PHE 329 GLY 330 SER 331 VAL 332 ARG 333 PHE 334 VAL 335 VAL 336 LEU 337 ASP 338 GLN 339 ALA 340 ASP 341 CYS 342 MET 343 LEU 344 ASP 345 MET 346 GLY 347 PHE 348 MET 349 PRO 350 SER 351 ILE 352 GLU 353 LYS 354 MET 355 MET 356 LEU 357 HIS 358 PRO 359 THR 360 MET 361 VAL 362 GLU 363 THR 364 THR 365 LYS 366 ARG 367 GLN 368 THR 369 LEU 370 MET 371 PHE 372 SER 373 ALA 374 THR 375 PHE 376 PRO 377 GLU 378 ASP 379 ILE 380 GLN 381 HIS 382 LEU 383 ALA 384 GLY 385 ARG 386 PHE 387 LEU 388 ASN 389 ASN 390 TYR 391 LEU 392 PHE 393 VAL 394 ALA 395 VAL 396 GLY 397 ILE 398 VAL 399 GLY 400 GLY 401 ALA 402 SER 403 THR 404 ASP 405 VAL 406 GLU 407 GLN 408 ILE 409 PHE 410 ILE 411 GLU 412 VAL 413 THR 414 LYS 415 TYR 416 GLU 417 LYS 418 ARG 419 ASN 420 SER 421 LEU 422 LYS 423 GLN 424 LEU 425 ILE 426 GLU 427 GLU 428 ASN 429 ASP 430 GLY 431 LYS 432 ARG 433 ILE 434 LEU 435 VAL 436 PHE 437 VAL 438 GLU 439 THR 440 LYS 441 ARG 442 ASN 443 ALA 444 ASP 445 PHE 446 ILE 447 ALA 448 ALA 449 MET 450 LEU 451 SER 452 GLU 453 GLN 454 GLN 455 LEU 456 LEU 457 THR 458 SER 459 SER 460 ILE 461 HIS 462 GLY 463 ASP 464 ARG 465 MET 466 GLN 467 ARG 468 GLU 469 ARG 470 GLU 471 GLU 472 ALA 473 LEU 474 GLN 475 ASN 476 PHE 477 LYS 478 SER 479 GLY 480 LYS 481 HIS 482 CYS 483 ILE 484 LEU 485 VAL 486 ALA 487 THR 488 ALA 489 VAL 490 ALA 491 ALA 492 ARG 493 GLY 494 LEU 495 ASP 496 ILE 497 LYS 498 ASN 499 VAL 500 ASP 501 ILE 502 VAL 503 VAL 504 ASN 505 TYR 506 ASP 507 LEU 508 PRO 509 LYS 510 SER 511 ILE 512 ASP 513 GLU 514 TYR 515 VAL 516 HIS 517 ARG 518 ILE 519 GLY 520 ARG 521 THR 522 GLY 523 ARG 524 VAL 525 GLY 526 ASN 527 ARG 528 GLY 529 LYS 530 ALA 531 VAL 532 SER 533 PHE 534 TYR 535 ASP 536 SER 537 ASP 538 GLN 539 ASP 540 LEU 541 ALA 542 LEU 543 VAL 544 ALA 545 ASP 546 LEU 547 SER 548 LYS 549 ILE 550 LEU 551 ARG 552 GLN 553 ALA 554 ASP 555 GLN 556 SER 557 VAL 558 PRO 559 ASP 560 PHE 561 LEU 562 LYS 563

Nucleic acids

Unit 2

U 1 G 2 A 3 C 4 A 5 U 6

Ligands

Unit 3	ANP 1564 MG 1565
Unit 4	GOL 1007