4CKL - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF 55 KDA N-TERMINAL DOMAIN OF E. COLI DNA GYRASE A SUBUNIT WITH SIMOCYCLINONE D8 BOUND
• Keywords: ISOMERASE, TOPOISOMERASE, ANTIBIOTIC TARGET
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4CKL	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DNA GYRASE SUBUNIT A	A	450	3449	0
2	Protein	DNA GYRASE SUBUNIT A	B	434	3335	0
3	Ligand	DNA GYRASE SUBUNIT A	A	1	0	66
4	Water			284	0	284
total				1169	6784	350

Proteins

Unit 1

ALA 33 LEU 34 PRO 35 ASP 36 VAL 37 ARG 38 ASP 39 GLY 40 LEU 41 LYS 42 PRO 43 VAL 44 HIS 45 ARG 46 ARG 47 VAL 48 LEU 49 TYR 50 ALA 51 MET 52 ASN 53 VAL 54 LEU 55 GLY 56 ASN 57 ASP 58 TRP 59 ASN 60 LYS 61 ALA 62 TYR 63 LYS 64 LYS 65 SER 66 ALA 67 ARG 68 VAL 69 VAL 70 GLY 71 ASP 72 VAL 73 ILE 74 GLY 75 LYS 76 TYR 77 HIS 78 PRO 79 HIS 80 GLY 81 ASP 82 SER 83 ALA 84 VAL 85 TYR 86 ASP 87 THR 88 ILE 89 VAL 90 ARG 91 MET 92 ALA 93 GLN 94 PRO 95 PHE 96 SER 97 LEU 98 ARG 99 TYR 100 MET 101 LEU 102 VAL 103 ASP 104 GLY 105 GLN 106 GLY 107 ASN 108 PHE 109 GLY 110 SER 111 ILE 112 ASP 113 GLY 114 ASP 115 SER 116 ALA 117 ALA 118 ALA 119 MET 120 ARG 121 TYR 122 THR 123 GLU 124 ILE 125 ARG 126 LEU 127 ALA 128 LYS 129 ILE 130 ALA 131 HIS 132 GLU 133 LEU 134 MET 135 ALA 136 ASP 137 LEU 138 GLU 139 LYS 140 GLU 141 THR 142 VAL 143 ASP 144 PHE 145 VAL 146 ASP 147 ASN 148 TYR 149 ASP 150 GLY 151 THR 152 GLU 153 LYS 154 ILE 155 PRO 156 ASP 157 VAL 158 MET 159 PRO 160 THR 161 LYS 162 ILE 163 PRO 164 ASN 165 LEU 166 LEU 167 VAL 168 ASN 169 GLY 170 SER 171 SER 172 GLY 173 ILE 174 ALA 179 THR 180 ASN 181 ILE 182 PRO 183 PRO 184 HIS 185 ASN 186 LEU 187 THR 188 GLU 189 VAL 190 ILE 191 ASN 192 GLY 193 CYS 194 LEU 195 ALA 196 TYR 197 ILE 198 ASP 199 ASP 200 GLU 201 ASP 202 ILE 203 SER 204 ILE 205 GLU 206 GLY 207 LEU 208 MET 209 GLU 210 HIS 211 ILE 212 PRO 213 GLY 214 PRO 215 ASP 216 PHE 217 PRO 218 THR 219 ALA 220 ALA 221 ILE 222 ILE 223 ASN 224 GLY 225 ARG 226 ARG 227 GLY 228 ILE 229 GLU 230 GLU 231 ALA 232 TYR 233 ARG 234 THR 235 GLY 236 ARG 237 GLY 238 LYS 239 VAL 240 TYR 241 ILE 242 ARG 243 ALA 244 ARG 245 ILE 259 ILE 260 VAL 261 HIS 262 GLU 263 ILE 264 PRO 265 TYR 266 GLN 267 VAL 268 ASN 269 LYS 270 ALA 271 ARG 272 LEU 273 ILE 274 GLU 275 LYS 276 ILE 277 ALA 278 GLU 279 LEU 280 VAL 281 LYS 282 LEU 292 ARG 293 ASP 294 GLU 295 SER 296 ASP 297 LYS 298 ASP 299 GLY 300 MET 301 ARG 302 ILE 303 VAL 304 ILE 305 VAL 315 VAL 316 LEU 317 ASN 318 ASN 319 LEU 320 TYR 321 SER 322 GLN 323 THR 324 GLN 325 LEU 326 GLN 327 VAL 328 SER 329 PHE 330 GLY 331 ILE 332 ASN 333 MET 334 VAL 335 ALA 336 LEU 337 HIS 338 HIS 339 GLY 340 GLN 341 PRO 342 LYS 343 ILE 344 MET 345 ASN 346 LEU 347 LYS 348 ASP 349 ILE 350 ILE 351 ALA 352 ALA 353 PHE 354 VAL 355 ARG 356 HIS 357 ARG 358 ARG 359 GLU 360 VAL 361 VAL 362 THR 363 ARG 364 ARG 365 THR 366 ILE 367 PHE 368 GLU 369 LEU 370 ARG 371 LYS 372 ALA 373 ARG 374 ASP 375 ARG 376 ALA 377 HIS 378 ILE 379 LEU 380 GLU 381 ALA 382 LEU 383 ALA 384 VAL 385 ALA 386 LEU 387 ALA 388 ASN 389 ILE 390 ASP 391 PRO 392 ILE 393 ILE 394 GLU 395 LEU 396 ILE 397 ARG 398 HIS 399 ALA 400 PRO 401 THR 402 PRO 403 ALA 404 GLU 405 ALA 406 LYS 407 THR 408 ALA 409 LEU 410 VAL 411 ALA 412 ASN 413 PRO 414 TRP 415 GLN 416 LEU 417 GLY 418 ASN 419 VAL 420 ALA 421 ALA 422 MET 423 LEU 424 GLU 425 ASP 430 ALA 431 ALA 432 ARG 433 PRO 434 GLU 435 TRP 436 LEU 437 GLU 438 PRO 439 GLU 440 PHE 441 GLY 442 VAL 443 ARG 444 ASP 445 GLY 446 LEU 447 TYR 448 TYR 449 LEU 450 THR 451 GLU 452 GLN 453 GLN 454 ALA 455 GLN 456 ALA 457 ILE 458 LEU 459 ASP 460 LEU 461 ARG 462 LEU 463 GLN 464 LYS 465 LEU 466 THR 467 GLY 468 LEU 469 GLU 470 HIS 471 GLU 472 LYS 473 LEU 474 LEU 475 ASP 476 GLU 477 TYR 478 LYS 479 GLU 480 LEU 481 LEU 482 ASP 483 GLN 484 ILE 485 ALA 486 GLU 487 LEU 488 LEU 489 ARG 490 ILE 491 LEU 492 GLY 493 SER 494 ALA 495 ASP 496 ARG 497 LEU 498 MET 499 GLU 500 VAL 501 ILE 502 ARG 503 GLU 504 GLU 505 LEU 506 GLU 507 LEU 508 VAL 509 ARG 510 GLU 511 GLN 512 PHE 513 GLY 514 ASP 515 LYS 516 ARG 517 ARG 518 THR 519 GLU 520 ILE 521

Unit 2

ALA 33 LEU 34 PRO 35 ASP 36 VAL 37 ARG 38 ASP 39 GLY 40 LEU 41 LYS 42 PRO 43 VAL 44 HIS 45 ARG 46 ARG 47 VAL 48 LEU 49 TYR 50 ALA 51 MET 52 ASN 53 VAL 54 LEU 55 GLY 56 ASN 57 ASP 58 TRP 59 ASN 60 LYS 61 ALA 62 TYR 63 LYS 64 LYS 65 SER 66 ALA 67 ARG 68 VAL 69 VAL 70 GLY 71 ASP 72 VAL 73 ILE 74 GLY 75 LYS 76 TYR 77 HIS 78 PRO 79 HIS 80 GLY 81 ASP 82 SER 83 ALA 84 VAL 85 TYR 86 ASP 87 THR 88 ILE 89 VAL 90 ARG 91 MET 92 ALA 93 GLN 94 PRO 95 PHE 96 SER 97 LEU 98 ARG 99 TYR 100 MET 101 LEU 102 VAL 103 ASP 104 GLY 105 GLN 106 GLY 107 ASN 108 PHE 109 GLY 110 SER 111 ILE 112 ASP 113 GLY 114 ASP 115 SER 116 ALA 117 ALA 118 ALA 119 MET 120 ARG 121 TYR 122 THR 123 GLU 124 ILE 125 ARG 126 LEU 127 ALA 128 LYS 129 ILE 130 ALA 131 HIS 132 GLU 133 LEU 134 MET 135 ALA 136 ASP 137 LEU 138 GLU 139 LYS 140 GLU 141 THR 142 VAL 143 ASP 144 PHE 145 VAL 146 ASP 147 ASN 148 TYR 149 ASP 150 GLY 151 THR 152 GLU 153 LYS 154 ILE 155 PRO 156 ASP 157 VAL 158 MET 159 PRO 160 THR 161 LYS 162 ILE 163 PRO 164 ASN 165 LEU 166 LEU 167 VAL 168 ASN 169 GLY 170 SER 171 SER 172 ALA 179 THR 180 ASN 181 ILE 182 PRO 183 PRO 184 HIS 185 ASN 186 LEU 187 THR 188 GLU 189 VAL 190 ILE 191 ASN 192 GLY 193 CYS 194 LEU 195 ALA 196 TYR 197 ILE 198 ASP 199 ASP 200 GLU 201 ASP 202 ILE 203 SER 204 ILE 205 GLU 206 GLY 207 LEU 208 MET 209 GLU 210 HIS 211 ILE 212 PRO 213 GLY 214 PRO 215 ASP 216 PHE 217 PRO 218 THR 219 ALA 220 ALA 221 ILE 222 ILE 223 ASN 224 GLY 225 ARG 226 ARG 227 GLY 228 ILE 229 GLU 230 GLU 231 ALA 232 TYR 233 ARG 234 THR 235 GLY 236 ARG 237 GLY 238 LYS 239 VAL 240 TYR 241 ILE 242 ARG 243 ALA 244 ARG 245 ALA 246 GLU 247 VAL 248 GLU 249 THR 258 ILE 259 ILE 260 VAL 261 HIS 262 GLU 263 ILE 264 PRO 265 TYR 266 GLN 267 VAL 268 ASN 269 LYS 270 ALA 271 ARG 272 LEU 273 ILE 274 GLU 275 LYS 276 ILE 277 ALA 278 GLU 279 LEU 280 VAL 281 LYS 282 GLU 283 LYS 284 ARG 285 VAL 286 GLU 287 GLY 288 ILE 289 SER 290 ALA 291 LEU 292 ARG 293 ASP 294 GLU 295 SER 296 ASP 297 LYS 298 ASP 299 GLY 300 MET 301 ARG 302 ILE 303 VAL 304 ILE 305 GLU 306 GLU 314 VAL 315 VAL 316 LEU 317 ASN 318 ASN 319 LEU 320 TYR 321 SER 322 GLN 323 THR 324 GLN 325 LEU 326 GLN 327 VAL 328 SER 329 PHE 330 GLY 331 ILE 332 ASN 333 MET 334 VAL 335 ALA 336 LEU 337 HIS 338 HIS 339 GLY 340 GLN 341 PRO 342 LYS 343 ILE 344 MET 345 ASN 346 LEU 347 LYS 348 ASP 349 ILE 350 ILE 351 ALA 352 ALA 353 PHE 354 VAL 355 ARG 356 HIS 357 ARG 358 ARG 359 GLU 360 VAL 361 VAL 362 THR 363 ARG 364 ARG 365 THR 366 ILE 367 PHE 368 GLU 369 LEU 370 ARG 371 LYS 372 ALA 373 ARG 374 ASP 375 ARG 376 ALA 377 HIS 378 ILE 379 LEU 380 GLU 381 ALA 382 LEU 383 ALA 384 VAL 385 ALA 386 LEU 387 ALA 388 ASN 389 ILE 390 ASP 391 PRO 392 ILE 393 ILE 394 GLU 395 LEU 396 ILE 397 ASN 413 PRO 414 TRP 415 GLN 416 LEU 417 GLY 418 ASP 430 ALA 431 ALA 432 ARG 433 PRO 434 GLU 435 TRP 436 LEU 437 GLU 438 PRO 439 LEU 447 TYR 448 TYR 449 LEU 450 THR 451 GLU 452 GLN 453 GLN 454 ALA 455 GLN 456 ALA 457 ILE 458 LEU 459 ASP 460 LEU 461 ARG 462 LEU 463 GLN 464 LYS 465 LEU 466 LEU 469 GLU 470 HIS 471 GLU 472 LYS 473 LEU 474 LEU 475 ASP 476 GLU 477 TYR 478 LYS 479 GLU 480 LEU 481 LEU 482 ASP 483 GLN 484 ILE 485 ALA 486 GLU 487 LEU 488 LEU 489 ARG 490 ILE 491 LEU 492 GLY 493 SER 494 ALA 495 ASP 496 ARG 497 LEU 498 MET 499 GLU 500 VAL 501 ILE 502 ARG 503 GLU 504 GLU 505 LEU 506 GLU 507 LEU 508 VAL 509 ARG 510 GLU 511 GLN 512 PHE 513 GLY 514 ASP 515 LYS 516 ARG 517 ARG 518 THR 519 GLU 520 ILE 521 THR 522

Ligands

Unit 3

SM8 1522