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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF FULL LENGTH HUMAN AMPK IN COMPLEX WITH A SMALL ACTIVATOR, A BENZIMIDAZOLE DERIVATIVE (991)
Keywords TRANSFERASE, NUCLEOTIDE-BINDING, STAUROSPORINE-BINDING, SERINE/THREONINE-PROTEIN KINASE, ACTIVATOR, CARBOHYDRATE BI MODULE (CBM)
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4CFE     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 426 3400 11
2  Protein   5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1  B 168 1326 10
3  Protein    C 404 3257 11
4  Protein   5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1  D 167 1312 10
5  Protein   5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1  E 294 2369 0
6  Protein   5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1  F 288 2315 0
7  Ligand    A 2 0 66
8  Ligand    C 2 0 66
9  Ligand   5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1  E 3 0 69
10  Ligand   5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1  F 3 0 69
11 Water     30 0 31
total       1787 13979 343

Proteins
Unit 1 ASP8 GLY9 ARG10 VAL11 LYS12 ILE13 GLY14 HIS15 TYR16 VAL17 LEU18 GLY19 ASP20 THR21 LEU22 GLY23 VAL24 GLY25 THR26 PHE27 GLY28 LYS29 VAL30 LYS31 ILE32 GLY33 GLU34 HIS35 GLN36 LEU37 THR38 GLY39 HIS40 LYS41 VAL42 ALA43 VAL44 LYS45 ILE46 LEU47 ASN48 ARG49 GLN50 LYS51 ILE52 ARG53 SER54 LEU55 ASP56 VAL57 VAL58 GLY59 LYS60 ILE61 LYS62 ARG63 GLU64 ILE65 GLN66 ASN67 LEU68 LYS69 LEU70 PHE71 ARG72 HIS73 PRO74 HIS75 ILE76 ILE77 LYS78 LEU79 TYR80 GLN81 VAL82 ILE83 SER84 THR85 PRO86 THR87 ASP88 PHE89 PHE90 MET91 VAL92 MET93 GLU94 TYR95 VAL96 SER97 GLY98 GLY99 GLU100 LEU101 PHE102 ASP103 TYR104 ILE105 CYS106 LYS107 HIS108 GLY109 ARG110 VAL111 GLU112 GLU113 MET114 GLU115 ALA116 ARG117 ARG118 LEU119 PHE120 GLN121 GLN122 ILE123 LEU124 SER125 ALA126 VAL127 ASP128 TYR129 CYS130 HIS131 ARG132 HIS133 MET134 VAL135 VAL136 HIS137 ARG138 ASP139 LEU140 LYS141 PRO142 GLU143 ASN144 VAL145 LEU146 LEU147 ASP148 ALA149 HIS150 MET151 ASN152 ALA153 LYS154 ILE155 ALA156 ASP157 PHE158 GLY159 LEU160 SER161 ASN162 MET163 MET164 SER165 ASP166 GLY167 GLU168 PHE169 LEU170 ARG171 TPO172 SER173 CYS174 GLY175 SER176 PRO177 ASN178 TYR179 ALA180 ALA181 PRO182 GLU183 VAL184 ILE185 SER186 GLY187 ARG188 LEU189 TYR190 ALA191 GLY192 PRO193 GLU194 VAL195 ASP196 ILE197 TRP198 SER199 CYS200 GLY201 VAL202 ILE203 LEU204 TYR205 ALA206 LEU207 LEU208 CYS209 GLY210 THR211 LEU212 PRO213 PHE214 ASP215 ASP216 GLU217 HIS218 VAL219 PRO220 THR221 LEU222 PHE223 LYS224 LYS225 ILE226 ARG227 GLY228 GLY229 VAL230 PHE231 TYR232 ILE233 PRO234 GLU235 TYR236 LEU237 ASN238 ARG239 SER240 VAL241 ALA242 THR243 LEU244 LEU245 MET246 HIS247 MET248 LEU249 GLN250 VAL251 ASP252 PRO253 LEU254 LYS255 ARG256 ALA257 THR258 ILE259 LYS260 ASP261 ILE262 ARG263 GLU264 HIS265 GLU266 TRP267 PHE268 LYS269 GLN270 ASP271 LEU272 PRO273 SER274 TYR275 LEU276 PHE277 PRO278 GLU279 ASP280 PRO281 SER282 TYR283 ASP284 ALA285 ASN286 VAL287 ILE288 ASP289 ASP290 GLU291 ALA292 VAL293 LYS294 GLU295 ALA321 VAL322 ALA323 TYR324 HIS325 LEU326 ILE327 ILE328 ASP329 ASN330 ARG331 ARG332 ILE333 MET334 ASN335 GLN336 ALA337 SER338 GLU339 PHE340 TYR341 LEU342 ALA343 SER344 SER345 PRO346 LEU363 LYS364 PRO365 HIS366 PRO367 GLU368 ARG369 MET370 PRO371 PRO372 LEU373 ILE374 ALA375 ASP376 ALA396 VAL397 LYS398 LYS399 ALA400 LYS401 TRP402 HIS403 LEU404 GLY405 ILE406 ARG407 SER408 GLN409 SER410 LYS411 PRO412 TYR413 ASP414 ILE415 MET416 ALA417 GLU418 VAL419 TYR420 ARG421 ALA422 MET423 LYS424 GLN425 LEU426 ASP427 PHE428 GLU429 TRP430 LYS431 VAL432 VAL433 ASN434 ALA435 TYR436 HIS437 LEU438 ARG439 VAL440 ARG441 ARG442 LYS443 ASN444 PRO445 VAL446 THR447 GLY448 ASN449 TYR450 VAL451 LYS452 MET453 SER454 LEU455 GLN456 LEU457 TYR458 LEU459 VAL460 ASP461 ASN462 ARG463 SER464 TYR465 LEU466 LEU467 ASP468 PHE469 LYS470 SER471 ILE472 ASP473 LEU532 GLY533 SER534 HIS535 THR536 MET537 ASP538 PHE539 PHE540 GLU541 MET542 CYS543 ALA544 SER545 LEU546 ILE547 THR548 THR549 LEU550 ALA551
Unit 2 ARG78 PRO79 THR80 VAL81 PHE82 ARG83 TRP84 THR85 GLY86 GLY87 GLY88 LYS89 GLU90 VAL91 TYR92 LEU93 SER94 GLY95 SER96 PHE97 ASN98 ASN99 TRP100 SER101 LYS102 LEU103 PRO104 LEU105 THR106 ARG107 SEP108 HIS109 ASN110 ASN111 PHE112 VAL113 ALA114 ILE115 LEU116 ASP117 LEU118 PRO119 GLU120 GLY121 GLU122 HIS123 GLN124 TYR125 LYS126 PHE127 PHE128 VAL129 ASP130 GLY131 GLN132 TRP133 THR134 HIS135 ASP136 PRO137 SER138 GLU139 PRO140 ILE141 VAL142 THR143 SER144 GLN145 LEU146 GLY147 THR148 VAL149 ASN150 ASN151 ILE152 ILE153 GLN154 VAL155 LYS156 LYS157 THR158 ASP159 PHE160 GLU161 VAL162 PHE163 ASP164 ALA165 LEU166 MET167 VAL168 ASP169 SER170 GLN171 LYS172 CYS173 GLU190B PRO191B TYR192B VAL193B PRO203 PRO204 ILE205 LEU206 PRO207 PRO208 HIS209 LEU210 LEU211 GLN212 VAL213 ILE214 LEU215 ASN216 LYS217 ASP218 THR219 GLY220 ILE221 SER222 CYS223 ASP224 PRO225 ALA226 LEU227 LEU228 PRO229 GLU230 PRO231 ASN232 HIS233 VAL234 MET235 LEU236 ASN237 HIS238 LEU239 TYR240 ALA241 LEU242 SER243 ILE244 LYS245 ASP246 GLY247 VAL248 MET249 VAL250 LEU251 SER252 ALA253 THR254 HIS255 ARG256 TYR257 LYS258 LYS259 LYS260 TYR261 VAL262 THR263 THR264 LEU265 LEU266 TYR267 LYS268 PRO269 ILE270
Unit 3 ARG10 VAL11 LYS12 ILE13 GLY14 HIS15 TYR16 VAL17 LEU18 GLY19 ASP20 THR21 LEU22 GLY23 VAL24 GLY25 THR26 PHE27 GLY28 LYS29 VAL30 LYS31 ILE32 GLY33 GLU34 HIS35 GLN36 LEU37 THR38 GLY39 HIS40 LYS41 VAL42 ALA43 VAL44 LYS45 ILE46 LEU47 ASN48 ARG49 GLN50 LYS51 ILE52 ARG53 SER54 LEU55 ASP56 VAL57 VAL58 GLY59 LYS60 ILE61 LYS62 ARG63 GLU64 ILE65 GLN66 ASN67 LEU68 LYS69 LEU70 PHE71 ARG72 HIS73 PRO74 HIS75 ILE76 ILE77 LYS78 LEU79 TYR80 GLN81 VAL82 ILE83 SER84 THR85 PRO86 THR87 ASP88 PHE89 PHE90 MET91 VAL92 MET93 GLU94 TYR95 VAL96 SER97 GLY98 GLY99 GLU100 LEU101 PHE102 ASP103 TYR104 ILE105 CYS106 LYS107 HIS108 GLY109 ARG110 VAL111 GLU112 GLU113 MET114 GLU115 ALA116 ARG117 ARG118 LEU119 PHE120 GLN121 GLN122 ILE123 LEU124 SER125 ALA126 VAL127 ASP128 TYR129 CYS130 HIS131 ARG132 HIS133 MET134 VAL135 VAL136 HIS137 ARG138 ASP139 LEU140 LYS141 PRO142 GLU143 ASN144 VAL145 LEU146 LEU147 ASP148 ALA149 HIS150 MET151 ASN152 ALA153 LYS154 ILE155 ALA156 ASP157 PHE158 GLY159 LEU160 SER161 ASN162 MET163 MET164 SER165 ASP166 GLY167 GLU168 PHE169 LEU170 ARG171 TPO172 SER173 CYS174 GLY175 SER176 PRO177 ASN178 TYR179 ALA180 ALA181 PRO182 GLU183 VAL184 ILE185 SER186 GLY187 ARG188 LEU189 TYR190 ALA191 GLY192 PRO193 GLU194 VAL195 ASP196 ILE197 TRP198 SER199 CYS200 GLY201 VAL202 ILE203 LEU204 TYR205 ALA206 LEU207 LEU208 CYS209 GLY210 THR211 LEU212 PRO213 PHE214 ASP215 ASP216 GLU217 HIS218 VAL219 PRO220 THR221 LEU222 PHE223 LYS224 LYS225 ILE226 ARG227 GLY228 GLY229 VAL230 PHE231 TYR232 ILE233 PRO234 GLU235 TYR236 LEU237 ASN238 ARG239 SER240 VAL241 ALA242 THR243 LEU244 LEU245 MET246 HIS247 MET248 LEU249 GLN250 VAL251 ASP252 PRO253 LEU254 LYS255 ARG256 ALA257 THR258 ILE259 LYS260 ASP261 ILE262 ARG263 GLU264 HIS265 GLU266 TRP267 PHE268 LYS269 GLN270 ASP271 LEU272 PRO273 SER274 TYR275 LEU276 PHE277 PRO278 GLU279 ASP280 PRO281 SER282 TYR283 ASP284 ILE327 ILE328 ASP329 ASN330 ARG331 ARG332 ILE333 MET334 ASN335 GLN336 ALA337 SER338 GLU339 PHE340 TYR341 LEU342 ALA343 SER344 SER345 PRO346 LEU363 LYS364 PRO365 HIS366 PRO367 GLU368 ARG369 MET370 PRO371 PRO372 LEU373 ALA396 VAL397 LYS398 LYS399 ALA400 LYS401 TRP402 HIS403 LEU404 GLY405 ILE406 ARG407 SER408 GLN409 SER410 LYS411 PRO412 TYR413 ASP414 ILE415 MET416 ALA417 GLU418 VAL419 TYR420 ARG421 ALA422 MET423 LYS424 GLN425 LEU426 ASP427 PHE428 GLU429 TRP430 LYS431 VAL432 VAL433 ASN434 ALA435 TYR436 HIS437 LEU438 ARG439 VAL440 ARG441 ARG442 LYS443 ASN444 PRO445 VAL446 THR447 GLY448 ASN449 TYR450 VAL451 LYS452 MET453 SER454 LEU455 GLN456 LEU457 TYR458 LEU459 VAL460 ASP461 ASN462 ARG463 SER464 TYR465 LEU466 LEU467 ASP468 PHE469 LYS470 SER471 ILE472 ASP473 LEU532 GLY533 SER534 HIS535 THR536 MET537 ASP538 PHE539 PHE540 GLU541 MET542 CYS543 ALA544 SER545 LEU546 ILE547 THR548 THR549 LEU550 ALA551
Unit 4 ARG78 PRO79 THR80 VAL81 PHE82 ARG83 TRP84 THR85 GLY86 GLY87 GLY88 LYS89 GLU90 VAL91 TYR92 LEU93 SER94 GLY95 SER96 PHE97 ASN98 ASN99 TRP100 SER101 LYS102 LEU103 PRO104 LEU105 THR106 ARG107 SEP108 HIS109 ASN110 ASN111 PHE112 VAL113 ALA114 ILE115 LEU116 ASP117 LEU118 PRO119 GLU120 GLY121 GLU122 HIS123 GLN124 TYR125 LYS126 PHE127 PHE128 VAL129 ASP130 GLY131 GLN132 TRP133 THR134 HIS135 ASP136 PRO137 SER138 GLU139 PRO140 ILE141 VAL142 THR143 SER144 GLN145 LEU146 GLY147 THR148 VAL149 ASN150 ASN151 ILE152 ILE153 GLN154 VAL155 LYS156 LYS157 THR158 ASP159 PHE160 GLU161 VAL162 PHE163 ASP164 ALA165 LEU166 MET167 VAL168 ASP169 SER170 GLN189A GLU190A PRO191A TYR192A VAL193A CYS194A PRO203 PRO204 ILE205 LEU206 PRO207 PRO208 HIS209 LEU210 LEU211 GLN212 VAL213 ILE214 LEU215 ASN216 LYS217 ASP218 THR219 GLY220 ILE221 SER222 CYS223 ASP224 PRO225 ALA226 LEU227 LEU228 PRO229 GLU230 PRO231 ASN232 HIS233 VAL234 MET235 LEU236 ASN237 HIS238 LEU239 TYR240 ALA241 LEU242 SER243 ILE244 LYS245 ASP246 GLY247 VAL248 MET249 VAL250 LEU251 SER252 ALA253 THR254 HIS255 ARG256 TYR257 LYS258 LYS259 LYS260 TYR261 VAL262 THR263 THR264 LEU265 LEU266 TYR267 LYS268 PRO269 ILE270
Unit 5 SER27 VAL28 TYR29 THR30 SER31 PHE32 MET33 LYS34 SER35 HIS36 ARG37 CYS38 TYR39 ASP40 LEU41 ILE42 PRO43 THR44 SER45 SER46 LYS47 LEU48 VAL49 VAL50 PHE51 ASP52 THR53 SER54 LEU55 GLN56 VAL57 LYS58 LYS59 ALA60 PHE61 PHE62 ALA63 LEU64 VAL65 THR66 ASN67 GLY68 VAL69 ARG70 ALA71 ALA72 PRO73 LEU74 TRP75 ASP76 SER77 LYS78 LYS79 GLN80 SER81 PHE82 VAL83 GLY84 MET85 LEU86 THR87 ILE88 THR89 ASP90 PHE91 ILE92 ASN93 ILE94 LEU95 HIS96 ARG97 TYR98 TYR99 LYS100 SER101 ALA102 LEU103 VAL104 GLN105 ILE106 TYR107 GLU108 LEU109 GLU110 GLU111 HIS112 LYS113 ILE114 GLU115 THR116 TRP117 ARG118 GLU119 VAL120 TYR121 LEU122 PRO128 LEU129 VAL130 CYS131 ILE132 SER133 PRO134 ASN135 ALA136 SER137 LEU138 PHE139 ASP140 ALA141 VAL142 SER143 SER144 LEU145 ILE146 ARG147 ASN148 LYS149 ILE150 HIS151 ARG152 LEU153 PRO154 VAL155 ILE156 ASP157 PRO158 GLU159 SER160 GLY161 ASN162 THR163 LEU164 TYR165 ILE166 LEU167 THR168 HIS169 LYS170 ARG171 ILE172 LEU173 LYS174 PHE175 LEU176 LYS177 LEU178 PHE179 ILE180 THR181 GLU182 PHE183 PRO184 LYS185 PRO186 GLU187 PHE188 MET189 SER190 LYS191 SER192 LEU193 GLU194 GLU195 LEU196 GLN197 ILE198 GLY199 THR200 TYR201 ALA202 ASN203 ILE204 ALA205 MET206 VAL207 ARG208 THR209 THR210 THR211 PRO212 VAL213 TYR214 VAL215 ALA216 LEU217 GLY218 ILE219 PHE220 VAL221 GLN222 HIS223 ARG224 VAL225 SER226 ALA227 LEU228 PRO229 VAL230 VAL231 ASP232 GLU233 LYS234 GLY235 ARG236 VAL237 VAL238 ASP239 ILE240 TYR241 SER242 LYS243 PHE244 ASP245 VAL246 ILE247 ASN248 LEU249 ALA250 ALA251 GLU252 LYS253 THR254 TYR255 ASN256 ASN257 LEU258 ASP259 VAL260 SER261 VAL262 THR263 LYS264 ALA265 LEU266 GLN267 HIS268 ARG269 SER270 HIS271 TYR272 PHE273 GLU274 GLY275 VAL276 LEU277 LYS278 CYS279 TYR280 LEU281 HIS282 GLU283 THR284 LEU285 GLU286 THR287 ILE288 ILE289 ASN290 ARG291 LEU292 VAL293 GLU294 ALA295 GLU296 VAL297 HIS298 ARG299 LEU300 VAL301 VAL302 VAL303 ASP304 GLU305 ASN306 ASP307 VAL308 VAL309 LYS310 GLY311 ILE312 VAL313 SER314 LEU315 SER316 ASP317 ILE318 LEU319 GLN320 ALA321 LEU322 VAL323 LEU324 THR325
Unit 6 SER27 VAL28 TYR29 THR30 SER31 PHE32 MET33 LYS34 SER35 HIS36 ARG37 CYS38 TYR39 ASP40 LEU41 ILE42 PRO43 THR44 SER45 SER46 LYS47 LEU48 VAL49 VAL50 PHE51 ASP52 THR53 SER54 LEU55 GLN56 VAL57 LYS58 LYS59 ALA60 PHE61 PHE62 ALA63 LEU64 VAL65 THR66 ASN67 GLY68 VAL69 ARG70 ALA71 ALA72 PRO73 LEU74 TRP75 ASP76 SER77 LYS78 LYS79 GLN80 SER81 PHE82 VAL83 GLY84 MET85 LEU86 THR87 ILE88 THR89 ASP90 PHE91 ILE92 ASN93 ILE94 LEU95 HIS96 ARG97 TYR98 TYR99 LYS100 SER101 ALA102 LEU103 VAL104 GLN105 ILE106 TYR107 GLU108 LEU109 GLU110 GLU111 HIS112 LYS113 ILE114 GLU115 THR116 TRP117 ARG118 GLU119 VAL120 TYR121 PRO128 LEU129 VAL130 CYS131 ILE132 SER133 PRO134 ASN135 ALA136 SER137 LEU138 PHE139 ASP140 ALA141 VAL142 SER143 SER144 LEU145 ILE146 ARG147 ASN148 LYS149 ILE150 HIS151 ARG152 LEU153 PRO154 VAL155 ILE156 ASP157 PRO158 GLU159 SER160 GLY161 ASN162 THR163 LEU164 TYR165 ILE166 LEU167 THR168 HIS169 LYS170 ARG171 ILE172 LEU173 LYS174 PHE175 LEU176 LYS177 LEU178 PHE179 ILE180 THR181 GLU182 PHE183 PRO184 LYS185 PRO186 GLU187 PHE188 MET189 SER190 LYS191 SER192 LEU193 GLU194 GLU195 LEU196 GLN197 ILE198 GLY199 THR200 TYR201 ALA202 ASN203 ILE204 ALA205 MET206 VAL207 ARG208 THR209 THR210 THR211 PRO212 VAL213 TYR214 VAL215 ALA216 LEU217 GLY218 ILE219 PHE220 VAL221 GLN222 HIS223 ARG224 VAL225 SER226 ALA227 LEU228 PRO229 VAL230 VAL231 ASP232 GLU233 LYS234 GLY235 ARG236 VAL237 VAL238 ASP239 ILE240 TYR241 SER242 LYS243 PHE244 ASP245 VAL246 ILE247 ASN248 LEU249 ALA250 ALA251 GLU252 LYS253 THR254 TYR255 ASN256 ASN257 LEU258 ASP259 VAL260 SER261 VAL262 THR263 LYS264 ALA265 LEU266 GLN267 HIS268 ARG269 SER270 VAL276 LEU277 LYS278 CYS279 TYR280 LEU281 HIS282 GLU283 THR284 LEU285 GLU286 THR287 ILE288 ILE289 ASN290 ARG291 LEU292 VAL293 GLU294 ALA295 GLU296 VAL297 HIS298 ARG299 LEU300 VAL301 VAL302 VAL303 ASP304 GLU305 ASN306 ASP307 VAL308 VAL309 LYS310 GLY311 ILE312 VAL313 SER314 LEU315 SER316 ASP317 ILE318 LEU319 GLN320 ALA321 LEU322 VAL323 LEU324 THR325

Ligands
Unit 7 STU1552 9921553
Unit 8 STU1552 9921553
Unit 9 AMP1326 AMP1327 AMP1328
Unit 10 AMP1326 AMP1327 AMP1328

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany