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Sequence, Chains, Asymmetric and Biological Units

Title 60S RIBOSOMAL PROTEIN L8 HISTIDINE HYDROXYLASE (NO66) IN COM MN(II) AND N-OXALYLGLYCINE (NOG)
Keywords OXIDOREDUCTASE, NON-HEME, IRON-BINDING, DSBH, 2-OXOGLUTARATE DIOXYGENASE, JMJC DOMAIN, RIBOSOME BIOGENESIS, NUCLEAR PROT RPL8, BETA-HYDROXYLATION, TRANSCRIPTION AND EPIGENETIC REGU SIGNALING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4CCK     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BIFUNCTIONAL LYSINE-SPECIFIC DEMETHYLASE AND HIST HYDROXYLASE NO66  A 456 3646 0
2  Protein   BIFUNCTIONAL LYSINE-SPECIFIC DEMETHYLASE AND HIST HYDROXYLASE NO66  B 456 3614 0
3  Protein   BIFUNCTIONAL LYSINE-SPECIFIC DEMETHYLASE AND HIST HYDROXYLASE NO66  C 458 3636 0
4  Protein   BIFUNCTIONAL LYSINE-SPECIFIC DEMETHYLASE AND HIST HYDROXYLASE NO66  D 459 3634 0
5  Ligand   BIFUNCTIONAL LYSINE-SPECIFIC DEMETHYLASE AND HIST HYDROXYLASE NO66  A 3 0 15
6  Ligand   BIFUNCTIONAL LYSINE-SPECIFIC DEMETHYLASE AND HIST HYDROXYLASE NO66  B 3 0 15
7  Ligand   BIFUNCTIONAL LYSINE-SPECIFIC DEMETHYLASE AND HIST HYDROXYLASE NO66  C 3 0 15
8  Ligand   BIFUNCTIONAL LYSINE-SPECIFIC DEMETHYLASE AND HIST HYDROXYLASE NO66  D 3 0 15
9 Water     829 0 829
total       2670 14530 889
Proteins
Unit 1 MET182 SER183 PRO184 LEU185 ARG186 ARG187 VAL188 LEU189 ALA190 GLU191 LEU192 ASN193 ARG194 ILE195 PRO196 SER197 SER198 ARG199 ARG200 ARG201 ALA202 ALA203 ARG204 LEU205 PHE206 GLU207 TRP208 LEU209 ILE210 ALA211 PRO212 MET213 PRO214 PRO215 ASP216 HIS217 PHE218 TYR219 ARG220 ARG221 LEU222 TRP223 GLU224 ARG225 GLU226 ALA227 VAL228 LEU229 VAL230 ARG231 ARG232 GLN233 ASP234 HIS235 THR236 TYR237 TYR238 GLN239 GLY240 LEU241 PHE242 SER243 THR244 ALA245 ASP246 LEU247 ASP248 SER249 MET250 LEU251 ARG252 ASN253 GLU254 GLU255 VAL256 GLN257 PHE258 GLY259 GLN260 HIS261 LEU262 ASP263 ALA264 ALA265 ARG266 TYR267 ILE268 ASN269 GLY270 ARG271 ARG272 GLU273 THR274 LEU275 ASN276 PRO277 PRO278 GLY279 ARG280 ALA281 LEU282 PRO283 ALA284 ALA285 ALA286 TRP287 SER288 LEU289 TYR290 GLN291 ALA292 GLY293 CYS294 SER295 LEU296 ARG297 LEU298 LEU299 CYS300 PRO301 GLN302 ALA303 PHE304 SER305 THR306 THR307 VAL308 TRP309 GLN310 PHE311 LEU312 ALA313 VAL314 LEU315 GLN316 GLU317 GLN318 PHE319 GLY320 SER321 MET322 ALA323 GLY324 SER325 ASN326 VAL327 TYR328 LEU329 THR330 PRO331 PRO332 ASN333 SER334 GLN335 GLY336 PHE337 ALA338 PRO339 HIS340 TYR341 ASP342 ASP343 ILE344 GLU345 ALA346 PHE347 VAL348 LEU349 GLN350 LEU351 GLU352 GLY353 ARG354 LYS355 LEU356 TRP357 ARG358 VAL359 TYR360 ARG361 PRO362 ARG363 ALA364 PRO365 THR366 GLU367 GLU368 LEU369 ALA370 LEU371 THR372 SER373 SER374 PRO375 ASN376 PHE377 SER378 GLN379 ASP380 ASP381 LEU382 GLY383 GLU384 PRO385 VAL386 LEU387 GLN388 THR389 VAL390 LEU391 GLU392 PRO393 GLY394 ASP395 LEU396 LEU397 TYR398 PHE399 PRO400 ARG401 GLY402 PHE403 ILE404 HIS405 GLN406 ALA407 GLU408 CYS409 GLN410 ASP411 GLY412 VAL413 HIS414 SER415 LEU416 HIS417 LEU418 THR419 LEU420 SER421 THR422 TYR423 GLN424 ARG425 ASN426 THR427 TRP428 GLY429 ASP430 PHE431 LEU432 GLU433 ALA434 ILE435 LEU436 PRO437 LEU438 ALA439 VAL440 GLN441 ALA442 ALA443 MET444 GLU445 GLU446 ASN447 VAL448 GLU449 PHE450 ARG451 ARG452 GLY453 LEU454 PRO455 ARG456 ASP457 PHE458 MET459 ASP460 TYR461 MET462 GLY463 ALA464 GLN465 HIS466 SER467 ASP468 SER469 LYS470 ASP471 PRO472 ARG473 ARG474 THR475 ALA476 PHE477 MET478 GLU479 LYS480 VAL481 ARG482 VAL483 LEU484 VAL485 ALA486 ARG487 LEU488 GLY489 HIS490 PHE491 ALA492 PRO493 VAL494 ASP495 ALA496 VAL497 ALA498 ASP499 GLN500 ARG501 ALA502 LYS503 ASP504 PHE505 ILE506 HIS507 ASP508 SER509 LEU510 PRO511 PRO512 VAL513 LEU514 THR515 ASP516 ARG517 GLU518 ARG519 ALA520 LEU521 SER522 VAL523 TYR524 GLY525 LEU526 PRO527 ILE528 ARG529 TRP530 GLU531 ALA532 GLY533 GLU534 PRO535 VAL536 ASN537 ALA540 GLN541 LEU542 THR543 THR544 GLU545 THR546 GLU547 VAL548 HIS549 MET550 LEU551 GLN552 ASP553 GLY554 ILE555 ALA556 ARG557 LEU558 VAL559 GLY560 GLU561 GLY562 GLY563 HIS564 LEU565 PHE566 LEU567 TYR568 TYR569 THR570 VAL571 GLU572 ASN573 SER574 ARG575 VAL576 TYR577 HIS578 LEU579 GLU580 GLU581 PRO582 LYS583 CYS584 LEU585 GLU586 ILE587 TYR588 PRO589 GLN590 GLN591 ALA592 ASP593 ALA594 MET595 GLU596 LEU597 LEU598 LEU599 GLY600 SER601 TYR602 PRO603 GLU604 PHE605 VAL606 ARG607 VAL608 GLY609 ASP610 LEU611 PRO612 CYS613 ASP614 SER615 VAL616 GLU617 ASP618 GLN619 LEU620 SER621 LEU622 ALA623 THR624 THR625 LEU626 TYR627 ASP628 LYS629 GLY630 LEU631 LEU632 LEU633 THR634 LYS635 MET636 PRO637 LEU638 ALA639
Unit 2 MET182 SER183 PRO184 LEU185 ARG186 ARG187 VAL188 LEU189 ALA190 GLU191 LEU192 ASN193 ARG194 ILE195 PRO196 SER197 SER198 ARG199 ARG200 ARG201 ALA202 ALA203 ARG204 LEU205 PHE206 GLU207 TRP208 LEU209 ILE210 ALA211 PRO212 MET213 PRO214 PRO215 ASP216 HIS217 PHE218 TYR219 ARG220 ARG221 LEU222 TRP223 GLU224 ARG225 GLU226 ALA227 VAL228 LEU229 VAL230 ARG231 ARG232 GLN233 ASP234 HIS235 THR236 TYR237 TYR238 GLN239 GLY240 LEU241 PHE242 SER243 THR244 ALA245 ASP246 LEU247 ASP248 SER249 MET250 LEU251 ARG252 ASN253 GLU254 GLU255 VAL256 GLN257 PHE258 GLY259 GLN260 HIS261 LEU262 ASP263 ALA264 ALA265 ARG266 TYR267 ILE268 ASN269 GLY270 ARG271 ARG272 GLU273 THR274 LEU275 ASN276 PRO277 PRO278 GLY279 ARG280 ALA281 LEU282 PRO283 ALA284 ALA285 ALA286 TRP287 SER288 LEU289 TYR290 GLN291 ALA292 GLY293 CYS294 SER295 LEU296 ARG297 LEU298 LEU299 CYS300 PRO301 GLN302 ALA303 PHE304 SER305 THR306 THR307 VAL308 TRP309 GLN310 PHE311 LEU312 ALA313 VAL314 LEU315 GLN316 GLU317 GLN318 PHE319 GLY320 SER321 MET322 ALA323 GLY324 SER325 ASN326 VAL327 TYR328 LEU329 THR330 PRO331 PRO332 ASN333 SER334 GLN335 GLY336 PHE337 ALA338 PRO339 HIS340 TYR341 ASP342 ASP343 ILE344 GLU345 ALA346 PHE347 VAL348 LEU349 GLN350 LEU351 GLU352 GLY353 ARG354 LYS355 LEU356 TRP357 ARG358 VAL359 TYR360 ARG361 PRO362 ARG363 ALA364 PRO365 THR366 GLU367 GLU368 LEU369 ALA370 LEU371 THR372 SER373 SER374 PRO375 ASN376 PHE377 SER378 GLN379 ASP380 ASP381 LEU382 GLY383 GLU384 PRO385 VAL386 LEU387 GLN388 THR389 VAL390 LEU391 GLU392 PRO393 GLY394 ASP395 LEU396 LEU397 TYR398 PHE399 PRO400 ARG401 GLY402 PHE403 ILE404 HIS405 GLN406 ALA407 GLU408 CYS409 GLN410 ASP411 GLY412 VAL413 HIS414 SER415 LEU416 HIS417 LEU418 THR419 LEU420 SER421 THR422 TYR423 GLN424 ARG425 ASN426 THR427 TRP428 GLY429 ASP430 PHE431 LEU432 GLU433 ALA434 ILE435 LEU436 PRO437 LEU438 ALA439 VAL440 GLN441 ALA442 ALA443 MET444 GLU445 GLU446 ASN447 VAL448 GLU449 PHE450 ARG451 ARG452 GLY453 LEU454 PRO455 ARG456 ASP457 PHE458 MET459 ASP460 TYR461 MET462 GLY463 ALA464 GLN465 HIS466 SER467 ASP468 SER469 LYS470 ASP471 PRO472 ARG473 ARG474 THR475 ALA476 PHE477 MET478 GLU479 LYS480 VAL481 ARG482 VAL483 LEU484 VAL485 ALA486 ARG487 LEU488 GLY489 HIS490 PHE491 ALA492 PRO493 VAL494 ASP495 ALA496 VAL497 ALA498 ASP499 GLN500 ARG501 ALA502 LYS503 ASP504 PHE505 ILE506 HIS507 ASP508 SER509 LEU510 PRO511 PRO512 VAL513 LEU514 THR515 ASP516 ARG517 GLU518 ARG519 ALA520 LEU521 SER522 VAL523 TYR524 GLY525 LEU526 PRO527 ILE528 ARG529 TRP530 GLU531 ALA532 GLY533 GLU534 PRO535 VAL536 ASN537 ALA540 GLN541 LEU542 THR543 THR544 GLU545 THR546 GLU547 VAL548 HIS549 MET550 LEU551 GLN552 ASP553 GLY554 ILE555 ALA556 ARG557 LEU558 VAL559 GLY560 GLU561 GLY562 GLY563 HIS564 LEU565 PHE566 LEU567 TYR568 TYR569 THR570 VAL571 GLU572 ASN573 SER574 ARG575 VAL576 TYR577 HIS578 LEU579 GLU580 GLU581 PRO582 LYS583 CYS584 LEU585 GLU586 ILE587 TYR588 PRO589 GLN590 GLN591 ALA592 ASP593 ALA594 MET595 GLU596 LEU597 LEU598 LEU599 GLY600 SER601 TYR602 PRO603 GLU604 PHE605 VAL606 ARG607 VAL608 GLY609 ASP610 LEU611 PRO612 CYS613 ASP614 SER615 VAL616 GLU617 ASP618 GLN619 LEU620 SER621 LEU622 ALA623 THR624 THR625 LEU626 TYR627 ASP628 LYS629 GLY630 LEU631 LEU632 LEU633 THR634 LYS635 MET636 PRO637 LEU638 ALA639
Unit 3 MET182 SER183 PRO184 LEU185 ARG186 ARG187 VAL188 LEU189 ALA190 GLU191 LEU192 ASN193 ARG194 ILE195 PRO196 SER197 SER198 ARG199 ARG200 ARG201 ALA202 ALA203 ARG204 LEU205 PHE206 GLU207 TRP208 LEU209 ILE210 ALA211 PRO212 MET213 PRO214 PRO215 ASP216 HIS217 PHE218 TYR219 ARG220 ARG221 LEU222 TRP223 GLU224 ARG225 GLU226 ALA227 VAL228 LEU229 VAL230 ARG231 ARG232 GLN233 ASP234 HIS235 THR236 TYR237 TYR238 GLN239 GLY240 LEU241 PHE242 SER243 THR244 ALA245 ASP246 LEU247 ASP248 SER249 MET250 LEU251 ARG252 ASN253 GLU254 GLU255 VAL256 GLN257 PHE258 GLY259 GLN260 HIS261 LEU262 ASP263 ALA264 ALA265 ARG266 TYR267 ILE268 ASN269 GLY270 ARG271 ARG272 GLU273 THR274 LEU275 ASN276 PRO277 PRO278 GLY279 ARG280 ALA281 LEU282 PRO283 ALA284 ALA285 ALA286 TRP287 SER288 LEU289 TYR290 GLN291 ALA292 GLY293 CYS294 SER295 LEU296 ARG297 LEU298 LEU299 CYS300 PRO301 GLN302 ALA303 PHE304 SER305 THR306 THR307 VAL308 TRP309 GLN310 PHE311 LEU312 ALA313 VAL314 LEU315 GLN316 GLU317 GLN318 PHE319 GLY320 SER321 MET322 ALA323 GLY324 SER325 ASN326 VAL327 TYR328 LEU329 THR330 PRO331 PRO332 ASN333 SER334 GLN335 GLY336 PHE337 ALA338 PRO339 HIS340 TYR341 ASP342 ASP343 ILE344 GLU345 ALA346 PHE347 VAL348 LEU349 GLN350 LEU351 GLU352 GLY353 ARG354 LYS355 LEU356 TRP357 ARG358 VAL359 TYR360 ARG361 PRO362 ARG363 ALA364 PRO365 THR366 GLU367 GLU368 LEU369 ALA370 LEU371 THR372 SER373 SER374 PRO375 ASN376 PHE377 SER378 GLN379 ASP380 ASP381 LEU382 GLY383 GLU384 PRO385 VAL386 LEU387 GLN388 THR389 VAL390 LEU391 GLU392 PRO393 GLY394 ASP395 LEU396 LEU397 TYR398 PHE399 PRO400 ARG401 GLY402 PHE403 ILE404 HIS405 GLN406 ALA407 GLU408 CYS409 GLN410 ASP411 GLY412 VAL413 HIS414 SER415 LEU416 HIS417 LEU418 THR419 LEU420 SER421 THR422 TYR423 GLN424 ARG425 ASN426 THR427 TRP428 GLY429 ASP430 PHE431 LEU432 GLU433 ALA434 ILE435 LEU436 PRO437 LEU438 ALA439 VAL440 GLN441 ALA442 ALA443 MET444 GLU445 GLU446 ASN447 VAL448 GLU449 PHE450 ARG451 ARG452 GLY453 LEU454 PRO455 ARG456 ASP457 PHE458 MET459 ASP460 TYR461 MET462 GLY463 ALA464 GLN465 HIS466 SER467 ASP468 SER469 LYS470 ASP471 PRO472 ARG473 ARG474 THR475 ALA476 PHE477 MET478 GLU479 LYS480 VAL481 ARG482 VAL483 LEU484 VAL485 ALA486 ARG487 LEU488 GLY489 HIS490 PHE491 ALA492 PRO493 VAL494 ASP495 ALA496 VAL497 ALA498 ASP499 GLN500 ARG501 ALA502 LYS503 ASP504 PHE505 ILE506 HIS507 ASP508 SER509 LEU510 PRO511 PRO512 VAL513 LEU514 THR515 ASP516 ARG517 GLU518 ARG519 ALA520 LEU521 SER522 VAL523 TYR524 GLY525 LEU526 PRO527 ILE528 ARG529 TRP530 GLU531 ALA532 GLY533 GLU534 PRO535 VAL536 ASN537 VAL538 ALA540 GLN541 LEU542 THR543 THR544 GLU545 THR546 GLU547 VAL548 HIS549 MET550 LEU551 GLN552 ASP553 GLY554 ILE555 ALA556 ARG557 LEU558 VAL559 GLY560 GLU561 GLY562 GLY563 HIS564 LEU565 PHE566 LEU567 TYR568 TYR569 THR570 VAL571 GLU572 ASN573 SER574 ARG575 VAL576 TYR577 HIS578 LEU579 GLU580 GLU581 PRO582 LYS583 CYS584 LEU585 GLU586 ILE587 TYR588 PRO589 GLN590 GLN591 ALA592 ASP593 ALA594 MET595 GLU596 LEU597 LEU598 LEU599 GLY600 SER601 TYR602 PRO603 GLU604 PHE605 VAL606 ARG607 VAL608 GLY609 ASP610 LEU611 PRO612 CYS613 ASP614 SER615 VAL616 GLU617 ASP618 GLN619 LEU620 SER621 LEU622 ALA623 THR624 THR625 LEU626 TYR627 ASP628 LYS629 GLY630 LEU631 LEU632 LEU633 THR634 LYS635 MET636 PRO637 LEU638 ALA639 LEU640
Unit 4 MET182 SER183 PRO184 LEU185 ARG186 ARG187 VAL188 LEU189 ALA190 GLU191 LEU192 ASN193 ARG194 ILE195 PRO196 SER197 SER198 ARG199 ARG200 ARG201 ALA202 ALA203 ARG204 LEU205 PHE206 GLU207 TRP208 LEU209 ILE210 ALA211 PRO212 MET213 PRO214 PRO215 ASP216 HIS217 PHE218 TYR219 ARG220 ARG221 LEU222 TRP223 GLU224 ARG225 GLU226 ALA227 VAL228 LEU229 VAL230 ARG231 ARG232 GLN233 ASP234 HIS235 THR236 TYR237 TYR238 GLN239 GLY240 LEU241 PHE242 SER243 THR244 ALA245 ASP246 LEU247 ASP248 SER249 MET250 LEU251 ARG252 ASN253 GLU254 GLU255 VAL256 GLN257 PHE258 GLY259 GLN260 HIS261 LEU262 ASP263 ALA264 ALA265 ARG266 TYR267 ILE268 ASN269 GLY270 ARG271 ARG272 GLU273 THR274 LEU275 ASN276 PRO277 PRO278 GLY279 ARG280 ALA281 LEU282 PRO283 ALA284 ALA285 ALA286 TRP287 SER288 LEU289 TYR290 GLN291 ALA292 GLY293 CYS294 SER295 LEU296 ARG297 LEU298 LEU299 CYS300 PRO301 GLN302 ALA303 PHE304 SER305 THR306 THR307 VAL308 TRP309 GLN310 PHE311 LEU312 ALA313 VAL314 LEU315 GLN316 GLU317 GLN318 PHE319 GLY320 SER321 MET322 ALA323 GLY324 SER325 ASN326 VAL327 TYR328 LEU329 THR330 PRO331 PRO332 ASN333 SER334 GLN335 GLY336 PHE337 ALA338 PRO339 HIS340 TYR341 ASP342 ASP343 ILE344 GLU345 ALA346 PHE347 VAL348 LEU349 GLN350 LEU351 GLU352 GLY353 ARG354 LYS355 LEU356 TRP357 ARG358 VAL359 TYR360 ARG361 PRO362 ARG363 ALA364 PRO365 THR366 GLU367 GLU368 LEU369 ALA370 LEU371 THR372 SER373 SER374 PRO375 ASN376 PHE377 SER378 GLN379 ASP380 ASP381 LEU382 GLY383 GLU384 PRO385 VAL386 LEU387 GLN388 THR389 VAL390 LEU391 GLU392 PRO393 GLY394 ASP395 LEU396 LEU397 TYR398 PHE399 PRO400 ARG401 GLY402 PHE403 ILE404 HIS405 GLN406 ALA407 GLU408 CYS409 GLN410 ASP411 GLY412 VAL413 HIS414 SER415 LEU416 HIS417 LEU418 THR419 LEU420 SER421 THR422 TYR423 GLN424 ARG425 ASN426 THR427 TRP428 GLY429 ASP430 PHE431 LEU432 GLU433 ALA434 ILE435 LEU436 PRO437 LEU438 ALA439 VAL440 GLN441 ALA442 ALA443 MET444 GLU445 GLU446 ASN447 VAL448 GLU449 PHE450 ARG451 ARG452 GLY453 LEU454 PRO455 ARG456 ASP457 PHE458 MET459 ASP460 TYR461 MET462 GLY463 ALA464 GLN465 HIS466 SER467 ASP468 SER469 LYS470 ASP471 PRO472 ARG473 ARG474 THR475 ALA476 PHE477 MET478 GLU479 LYS480 VAL481 ARG482 VAL483 LEU484 VAL485 ALA486 ARG487 LEU488 GLY489 HIS490 PHE491 ALA492 PRO493 VAL494 ASP495 ALA496 VAL497 ALA498 ASP499 GLN500 ARG501 ALA502 LYS503 ASP504 PHE505 ILE506 HIS507 ASP508 SER509 LEU510 PRO511 PRO512 VAL513 LEU514 THR515 ASP516 ARG517 GLU518 ARG519 ALA520 LEU521 SER522 VAL523 TYR524 GLY525 LEU526 PRO527 ILE528 ARG529 TRP530 GLU531 ALA532 GLY533 GLU534 PRO535 VAL536 ASN537 VAL538 ALA540 GLN541 LEU542 THR543 THR544 GLU545 THR546 GLU547 VAL548 HIS549 MET550 LEU551 GLN552 ASP553 GLY554 ILE555 ALA556 ARG557 LEU558 VAL559 GLY560 GLU561 GLY562 GLY563 HIS564 LEU565 PHE566 LEU567 TYR568 TYR569 THR570 VAL571 GLU572 ASN573 SER574 ARG575 VAL576 TYR577 HIS578 LEU579 GLU580 GLU581 PRO582 LYS583 CYS584 LEU585 GLU586 ILE587 TYR588 PRO589 GLN590 GLN591 ALA592 ASP593 ALA594 MET595 GLU596 LEU597 LEU598 LEU599 GLY600 SER601 TYR602 PRO603 GLU604 PHE605 VAL606 ARG607 VAL608 GLY609 ASP610 LEU611 PRO612 CYS613 ASP614 SER615 VAL616 GLU617 ASP618 GLN619 LEU620 SER621 LEU622 ALA623 THR624 THR625 LEU626 TYR627 ASP628 LYS629 GLY630 LEU631 LEU632 LEU633 THR634 LYS635 MET636 PRO637 LEU638 ALA639 LEU640 ASN641
Ligands
Unit 5 MN901 OGA902 EDO903
Unit 6 MN901 OGA902 EDO903
Unit 7 MN901 OGA902 EDO903
Unit 8 MN901 OGA902 EDO903
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany