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Sequence, Chains, Asymmetric and Biological Units

Title DESIGN, SYNTHESIS, AND BIOLOGICAL EVALUATION OF POTENT AND S CLASS IIA HDAC INHIBITORS AS A POTENTIAL THERAPY FOR HUNTIN DISEASE
Keywords HYDROLASE, NEURODEGENERATION, AMYOTROPHIC LATERAL SCLEROSIS, ATROPHY, CLASS IIA HISTONE DEACETYLASE INHIBITORS, SAR, HYD ACID, CYCLOPROPANATION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4CBY     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HISTONE DEACETYLASE 4  A 380 2823 0
2  Protein   HISTONE DEACETYLASE 4  B 380 2795 0
3  Protein   HISTONE DEACETYLASE 4  C 380 2802 0
4  Protein   HISTONE DEACETYLASE 4  D 383 2812 0
5  Ligand   HISTONE DEACETYLASE 4  A 5 0 28
6  Ligand   HISTONE DEACETYLASE 4  B 5 0 28
7  Ligand   HISTONE DEACETYLASE 4  C 5 0 28
8  Ligand   HISTONE DEACETYLASE 4  D 5 0 28
9 Water     91 0 91
total       1634 11232 203
Proteins
Unit 1 THR653 THR654 GLY655 LEU656 VAL657 TYR658 ASP659 THR660 LEU661 MET662 LEU663 LYS664 HIS665 GLN666 CYS667 THR668 CYS669 GLY670 SER671 SER672 SER673 SER674 HIS675 PRO676 GLU677 HIS678 ALA679 GLY680 ARG681 ILE682 GLN683 SER684 ILE685 TRP686 SER687 ARG688 LEU689 GLN690 GLU691 THR692 GLY693 LEU694 ARG695 GLY696 LYS697 CYS698 GLU699 CYS700 ILE701 ARG702 GLY703 ARG704 LYS705 ALA706 THR707 LEU708 GLU709 GLU710 LEU711 GLN712 THR713 VAL714 HIS715 SER716 GLU717 ALA718 HIS719 THR720 LEU721 LEU722 TYR723 GLY724 THR725 ASN726 PRO727 ALA728 ASN729 ARG730 GLN731 LYS732 LEU733 ASP734 SER735 LYS736 LYS737 LEU738 LEU739 GLY740 SER741 LEU742 ALA743 SER744 VAL745 PHE746 VAL747 ARG748 LEU749 PRO750 CYS751 GLY752 GLY753 VAL754 GLY755 VAL756 ASP757 SER758 ASP759 THR760 ILE761 TRP762 ASN763 GLU764 VAL765 HIS766 SER767 ALA768 GLY769 ALA770 ALA771 ARG772 LEU773 ALA774 VAL775 GLY776 CYS777 VAL778 VAL779 GLU780 LEU781 VAL782 PHE783 LYS784 VAL785 ALA786 THR787 GLY788 GLU789 LEU790 LYS791 ASN792 GLY793 PHE794 ALA795 VAL796 VAL797 ARG798 PRO799 PRO800 GLY801 HIS802 HIS803 ALA804 GLU805 GLU806 SER807 THR808 PRO809 MET810 GLY811 PHE812 CYS813 TYR814 PHE815 ASN816 SER817 VAL818 ALA819 VAL820 ALA821 ALA822 LYS823 LEU824 LEU825 GLN826 GLN827 ARG828 LEU829 SER830 VAL831 SER832 LYS833 ILE834 LEU835 ILE836 VAL837 ASP838 TRP839 ASP840 VAL841 HIS842 HIS843 GLY844 ASN845 GLY846 THR847 GLN848 GLN849 ALA850 PHE851 TYR852 SER853 ASP854 PRO855 SER856 VAL857 LEU858 TYR859 MET860 SER861 LEU862 HIS863 ARG864 TYR865 ASP866 ASP867 GLY868 ASN869 PHE870 PHE871 PRO872 GLY873 SER874 GLY875 ALA876 PRO877 ASP878 GLU879 VAL880 GLY881 THR882 GLY883 PRO884 GLY885 VAL886 GLY887 PHE888 ASN889 VAL890 ASN891 MET892 ALA893 PHE894 THR895 GLY896 GLY897 LEU898 ASP899 PRO900 PRO901 MET902 GLY903 ASP904 ALA905 GLU906 TYR907 LEU908 ALA909 ALA910 PHE911 ARG912 THR913 VAL914 VAL915 MET916 PRO917 ILE918 ALA919 SER920 GLU921 PHE922 ALA923 PRO924 ASP925 VAL926 VAL927 LEU928 VAL929 SER930 SER931 GLY932 PHE933 ASP934 ALA935 VAL936 GLU937 GLY938 HIS939 PRO940 THR941 PRO942 LEU943 GLY944 GLY945 TYR946 ASN947 LEU948 SER949 ALA950 ARG951 CYS952 PHE953 GLY954 TYR955 LEU956 THR957 LYS958 GLN959 LEU960 MET961 GLY962 LEU963 ALA964 GLY965 GLY966 ARG967 ILE968 VAL969 LEU970 ALA971 LEU972 GLU973 GLY974 GLY975 HIS976 ASP977 LEU978 THR979 ALA980 ILE981 CYS982 ASP983 ALA984 SER985 GLU986 ALA987 CYS988 VAL989 SER990 ALA991 LEU992 LEU993 GLY994 ASN995 GLU996 LEU997 ASP998 PRO999 LEU1000 PRO1001 GLU1002 LYS1003 VAL1004 LEU1005 GLN1006 GLN1007 ARG1008 PRO1009 ASN1010 ALA1011 ASN1012 ALA1013 VAL1014 ARG1015 SER1016 MET1017 GLU1018 LYS1019 VAL1020 MET1021 GLU1022 ILE1023 HIS1024 SER1025 LYS1026 TYR1027 TRP1028 ARG1029 CYS1030 LEU1031 GLN1032
Unit 2 PHE652 THR653 THR654 GLY655 LEU656 VAL657 TYR658 ASP659 THR660 LEU661 MET662 LEU663 LYS664 HIS665 GLN666 CYS667 THR668 CYS669 GLY670 SER671 SER672 SER673 SER674 HIS675 PRO676 GLU677 HIS678 ALA679 GLY680 ARG681 ILE682 GLN683 SER684 ILE685 TRP686 SER687 ARG688 LEU689 GLN690 GLU691 THR692 GLY693 LEU694 ARG695 GLY696 LYS697 CYS698 GLU699 CYS700 ILE701 ARG702 GLY703 ARG704 LYS705 ALA706 THR707 LEU708 GLU709 GLU710 LEU711 GLN712 THR713 VAL714 HIS715 SER716 GLU717 ALA718 HIS719 THR720 LEU721 LEU722 TYR723 GLY724 THR725 ASN726 PRO727 ALA728 ASN729 ARG730 GLN731 LYS732 LEU733 ASP734 SER735 LYS736 LYS737 LEU738 LEU739 GLY740 SER741 LEU742 ALA743 SER744 VAL745 PHE746 VAL747 ARG748 LEU749 PRO750 CYS751 GLY752 GLY753 VAL754 GLY755 VAL756 ASP757 SER758 ASP759 THR760 ILE761 TRP762 ASN763 GLU764 VAL765 HIS766 SER767 ALA768 GLY769 ALA770 ALA771 ARG772 LEU773 ALA774 VAL775 GLY776 CYS777 VAL778 VAL779 GLU780 LEU781 VAL782 PHE783 LYS784 VAL785 ALA786 THR787 GLY788 GLU789 LEU790 LYS791 ASN792 GLY793 PHE794 ALA795 VAL796 VAL797 ARG798 PRO799 PRO800 GLY801 HIS802 HIS803 ALA804 GLU805 GLU806 SER807 THR808 PRO809 MET810 GLY811 PHE812 CYS813 TYR814 PHE815 ASN816 SER817 VAL818 ALA819 VAL820 ALA821 ALA822 LYS823 LEU824 LEU825 GLN826 GLN827 ARG828 LEU829 SER830 VAL831 SER832 LYS833 ILE834 LEU835 ILE836 VAL837 ASP838 TRP839 ASP840 VAL841 HIS842 HIS843 GLY844 ASN845 GLY846 THR847 GLN848 GLN849 ALA850 PHE851 TYR852 SER853 ASP854 PRO855 SER856 VAL857 LEU858 TYR859 MET860 SER861 LEU862 HIS863 ARG864 TYR865 ASP866 ASP867 GLY868 ASN869 PHE870 PHE871 PRO872 GLY873 SER874 GLY875 ALA876 PRO877 ASP878 GLU879 VAL880 GLY881 THR882 GLY883 PRO884 GLY885 VAL886 GLY887 PHE888 ASN889 VAL890 ASN891 MET892 ALA893 PHE894 THR895 GLY896 GLY897 LEU898 ASP899 PRO900 PRO901 MET902 GLY903 ASP904 ALA905 GLU906 TYR907 LEU908 ALA909 ALA910 PHE911 ARG912 THR913 VAL914 VAL915 MET916 PRO917 ILE918 ALA919 SER920 GLU921 PHE922 ALA923 PRO924 ASP925 VAL926 VAL927 LEU928 VAL929 SER930 SER931 GLY932 PHE933 ASP934 ALA935 VAL936 GLU937 GLY938 HIS939 PRO940 THR941 PRO942 LEU943 GLY944 GLY945 TYR946 ASN947 LEU948 SER949 ALA950 ARG951 CYS952 PHE953 GLY954 TYR955 LEU956 THR957 LYS958 GLN959 LEU960 MET961 GLY962 LEU963 ALA964 GLY965 GLY966 ARG967 ILE968 VAL969 LEU970 ALA971 LEU972 GLU973 GLY974 GLY975 HIS976 ASP977 LEU978 THR979 ALA980 ILE981 CYS982 ASP983 ALA984 SER985 GLU986 ALA987 CYS988 VAL989 SER990 ALA991 LEU992 LEU993 GLY994 ASN995 GLU996 LEU997 ASP998 PRO999 LEU1000 PRO1001 GLU1002 LYS1003 VAL1004 LEU1005 GLN1006 GLN1007 ARG1008 PRO1009 ASN1010 ALA1011 ASN1012 ALA1013 VAL1014 ARG1015 SER1016 MET1017 GLU1018 LYS1019 VAL1020 MET1021 GLU1022 ILE1023 HIS1024 SER1025 LYS1026 TYR1027 TRP1028 ARG1029 CYS1030 LEU1031
Unit 3 THR653 THR654 GLY655 LEU656 VAL657 TYR658 ASP659 THR660 LEU661 MET662 LEU663 LYS664 HIS665 GLN666 CYS667 THR668 CYS669 GLY670 SER671 SER672 SER673 SER674 HIS675 PRO676 GLU677 HIS678 ALA679 GLY680 ARG681 ILE682 GLN683 SER684 ILE685 TRP686 SER687 ARG688 LEU689 GLN690 GLU691 THR692 GLY693 LEU694 ARG695 GLY696 LYS697 CYS698 GLU699 CYS700 ILE701 ARG702 GLY703 ARG704 LYS705 ALA706 THR707 LEU708 GLU709 GLU710 LEU711 GLN712 THR713 VAL714 HIS715 SER716 GLU717 ALA718 HIS719 THR720 LEU721 LEU722 TYR723 GLY724 THR725 ASN726 PRO727 ALA728 ASN729 ARG730 GLN731 LYS732 LEU733 ASP734 SER735 LYS736 LYS737 LEU738 LEU739 GLY740 SER741 LEU742 ALA743 SER744 VAL745 PHE746 VAL747 ARG748 LEU749 PRO750 CYS751 GLY752 GLY753 VAL754 GLY755 VAL756 ASP757 SER758 ASP759 THR760 ILE761 TRP762 ASN763 GLU764 VAL765 HIS766 SER767 ALA768 GLY769 ALA770 ALA771 ARG772 LEU773 ALA774 VAL775 GLY776 CYS777 VAL778 VAL779 GLU780 LEU781 VAL782 PHE783 LYS784 VAL785 ALA786 THR787 GLY788 GLU789 LEU790 LYS791 ASN792 GLY793 PHE794 ALA795 VAL796 VAL797 ARG798 PRO799 PRO800 GLY801 HIS802 HIS803 ALA804 GLU805 GLU806 SER807 THR808 PRO809 MET810 GLY811 PHE812 CYS813 TYR814 PHE815 ASN816 SER817 VAL818 ALA819 VAL820 ALA821 ALA822 LYS823 LEU824 LEU825 GLN826 GLN827 ARG828 LEU829 SER830 VAL831 SER832 LYS833 ILE834 LEU835 ILE836 VAL837 ASP838 TRP839 ASP840 VAL841 HIS842 HIS843 GLY844 ASN845 GLY846 THR847 GLN848 GLN849 ALA850 PHE851 TYR852 SER853 ASP854 PRO855 SER856 VAL857 LEU858 TYR859 MET860 SER861 LEU862 HIS863 ARG864 TYR865 ASP866 ASP867 GLY868 ASN869 PHE870 PHE871 PRO872 GLY873 SER874 GLY875 ALA876 PRO877 ASP878 GLU879 VAL880 GLY881 THR882 GLY883 PRO884 GLY885 VAL886 GLY887 PHE888 ASN889 VAL890 ASN891 MET892 ALA893 PHE894 THR895 GLY896 GLY897 LEU898 ASP899 PRO900 PRO901 MET902 GLY903 ASP904 ALA905 GLU906 TYR907 LEU908 ALA909 ALA910 PHE911 ARG912 THR913 VAL914 VAL915 MET916 PRO917 ILE918 ALA919 SER920 GLU921 PHE922 ALA923 PRO924 ASP925 VAL926 VAL927 LEU928 VAL929 SER930 SER931 GLY932 PHE933 ASP934 ALA935 VAL936 GLU937 GLY938 HIS939 PRO940 THR941 PRO942 LEU943 GLY944 GLY945 TYR946 ASN947 LEU948 SER949 ALA950 ARG951 CYS952 PHE953 GLY954 TYR955 LEU956 THR957 LYS958 GLN959 LEU960 MET961 GLY962 LEU963 ALA964 GLY965 GLY966 ARG967 ILE968 VAL969 LEU970 ALA971 LEU972 GLU973 GLY974 GLY975 HIS976 ASP977 LEU978 THR979 ALA980 ILE981 CYS982 ASP983 ALA984 SER985 GLU986 ALA987 CYS988 VAL989 SER990 ALA991 LEU992 LEU993 GLY994 ASN995 GLU996 LEU997 ASP998 PRO999 LEU1000 PRO1001 GLU1002 LYS1003 VAL1004 LEU1005 GLN1006 GLN1007 ARG1008 PRO1009 ASN1010 ALA1011 ASN1012 ALA1013 VAL1014 ARG1015 SER1016 MET1017 GLU1018 LYS1019 VAL1020 MET1021 GLU1022 ILE1023 HIS1024 SER1025 LYS1026 TYR1027 TRP1028 ARG1029 CYS1030 LEU1031 GLN1032
Unit 4 THR653 THR654 GLY655 LEU656 VAL657 TYR658 ASP659 THR660 LEU661 MET662 LEU663 LYS664 HIS665 GLN666 CYS667 THR668 CYS669 GLY670 SER671 SER672 SER673 SER674 HIS675 PRO676 GLU677 HIS678 ALA679 GLY680 ARG681 ILE682 GLN683 SER684 ILE685 TRP686 SER687 ARG688 LEU689 GLN690 GLU691 THR692 GLY693 LEU694 ARG695 GLY696 LYS697 CYS698 GLU699 CYS700 ILE701 ARG702 GLY703 ARG704 LYS705 ALA706 THR707 LEU708 GLU709 GLU710 LEU711 GLN712 THR713 VAL714 HIS715 SER716 GLU717 ALA718 HIS719 THR720 LEU721 LEU722 TYR723 GLY724 THR725 ASN726 PRO727 ALA728 ASN729 ARG730 GLN731 LYS732 LEU733 ASP734 SER735 LYS736 LYS737 LEU738 LEU739 GLY740 SER741 LEU742 ALA743 SER744 VAL745 PHE746 VAL747 ARG748 LEU749 PRO750 CYS751 GLY752 GLY753 VAL754 GLY755 VAL756 ASP757 SER758 ASP759 THR760 ILE761 TRP762 ASN763 GLU764 VAL765 HIS766 SER767 ALA768 GLY769 ALA770 ALA771 ARG772 LEU773 ALA774 VAL775 GLY776 CYS777 VAL778 VAL779 GLU780 LEU781 VAL782 PHE783 LYS784 VAL785 ALA786 THR787 GLY788 GLU789 LEU790 LYS791 ASN792 GLY793 PHE794 ALA795 VAL796 VAL797 ARG798 PRO799 PRO800 GLY801 HIS802 HIS803 ALA804 GLU805 GLU806 SER807 THR808 PRO809 MET810 GLY811 PHE812 CYS813 TYR814 PHE815 ASN816 SER817 VAL818 ALA819 VAL820 ALA821 ALA822 LYS823 LEU824 LEU825 GLN826 GLN827 ARG828 LEU829 SER830 VAL831 SER832 LYS833 ILE834 LEU835 ILE836 VAL837 ASP838 TRP839 ASP840 VAL841 HIS842 HIS843 GLY844 ASN845 GLY846 THR847 GLN848 GLN849 ALA850 PHE851 TYR852 SER853 ASP854 PRO855 SER856 VAL857 LEU858 TYR859 MET860 SER861 LEU862 HIS863 ARG864 TYR865 ASP866 ASP867 GLY868 ASN869 PHE870 PHE871 PRO872 GLY873 SER874 GLY875 ALA876 PRO877 ASP878 GLU879 VAL880 GLY881 THR882 GLY883 PRO884 GLY885 VAL886 GLY887 PHE888 ASN889 VAL890 ASN891 MET892 ALA893 PHE894 THR895 GLY896 GLY897 LEU898 ASP899 PRO900 PRO901 MET902 GLY903 ASP904 ALA905 GLU906 TYR907 LEU908 ALA909 ALA910 PHE911 ARG912 THR913 VAL914 VAL915 MET916 PRO917 ILE918 ALA919 SER920 GLU921 PHE922 ALA923 PRO924 ASP925 VAL926 VAL927 LEU928 VAL929 SER930 SER931 GLY932 PHE933 ASP934 ALA935 VAL936 GLU937 GLY938 HIS939 PRO940 THR941 PRO942 LEU943 GLY944 GLY945 TYR946 ASN947 LEU948 SER949 ALA950 ARG951 CYS952 PHE953 GLY954 TYR955 LEU956 THR957 LYS958 GLN959 LEU960 MET961 GLY962 LEU963 ALA964 GLY965 GLY966 ARG967 ILE968 VAL969 LEU970 ALA971 LEU972 GLU973 GLY974 GLY975 HIS976 ASP977 LEU978 THR979 ALA980 ILE981 CYS982 ASP983 ALA984 SER985 GLU986 ALA987 CYS988 VAL989 SER990 ALA991 LEU992 LEU993 GLY994 ASN995 GLU996 LEU997 ASP998 PRO999 LEU1000 PRO1001 GLU1002 LYS1003 VAL1004 LEU1005 GLN1006 GLN1007 ARG1008 PRO1009 ASN1010 ALA1011 ASN1012 ALA1013 VAL1014 ARG1015 SER1016 MET1017 GLU1018 LYS1019 VAL1020 MET1021 GLU1022 ILE1023 HIS1024 SER1025 LYS1026 TYR1027 TRP1028 ARG1029 CYS1030 LEU1031 GLN1032 ARG1033 HIS1034 HIS1035
Ligands
Unit 5 KEE2033 ZN2034 ZN2035 NA2036 NA2037
Unit 6 KEE2032 ZN2033 ZN2034 NA2035 NA2036
Unit 7 KEE2033 ZN2034 ZN2035 NA2036 NA2037
Unit 8 KEE2036 ZN2037 ZN2038 NA2039 NA2040
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany