4C8Q - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE YEAST LSM1-7-PAT1 COMPLEX
• Keywords: TRANSCRIPTION, MRNA DECAPPING, SM FOLD, MRNA DEGRADATION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4C8Q	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	SM-LIKE PROTEIN LSM1	A	94	673	0
2	Protein	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM2	B	104	796	0
3	Protein	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	C	79	589	0
4	Protein	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4	D	81	504	0
5	Protein	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5	E	83	600	0
6	Protein	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM6	F	77	571	0
7	Protein	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7	G	69	456	0
8	Protein	DNA TOPOISOMERASE 2-ASSOCIATED PROTEIN PAT1	H	279	2089	0
9	Ligand	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	C	1	0	1
10	Ligand	DNA TOPOISOMERASE 2-ASSOCIATED PROTEIN PAT1	H	1	0	1
total				868	6278	2

Proteins

Unit 1	VAL 50 ASP 51 ARG 52 LYS 53 ILE 54 PHE 55 VAL 56 LEU 57 LEU 58 ARG 59 ASP 60 GLY 61 ARG 62 MET 63 LEU 64 PHE 65 GLY 66 VAL 67 LEU 68 ARG 69 THR 70 PHE 71 ASP 72 GLN 73 TYR 74 ALA 75 ASN 76 LEU 77 ILE 78 LEU 79 GLN 80 ASP 81 CYS 82 VAL 83 GLU 84 ARG 85 ILE 86 TYR 87 PHE 88 SER 89 GLU 90 GLU 91 ASN 92 LYS 93 TYR 94 ALA 95 GLU 96 GLU 97 ASP 98 ARG 99 GLY 100 ILE 101 PHE 102 MET 103 ILE 104 ARG 105 GLY 106 GLU 107 ASN 108 VAL 109 VAL 110 MET 111 LEU 112 GLY 113 GLU 114 VAL 115 ASP 116 ILE 117 ASP 118 LYS 119 GLU 120 ASP 121 GLN 122 PRO 123 LEU 124 GLU 125 ALA 126 MET 127 GLU 128 ARG 129 ILE 130 PRO 131 PHE 132 LYS 133 GLU 134 ALA 135 TRP 136 LEU 137 THR 138 LYS 139 GLN 140 LYS 141 ASN 142 ASP 143
Unit 2	SER -9 GLU -8 ASN -7 LEU -6 TYR -5 PHE -4 GLN -3 GLY -2 SER -1 GLY 0 SER 1 LEU 2 PHE 3 PHE 4 SER 5 PHE 6 PHE 7 LYS 8 THR 9 LEU 10 VAL 11 ASP 12 GLN 13 GLU 14 VAL 15 VAL 16 VAL 17 GLU 18 LEU 19 LYS 20 ASN 21 ASP 22 ILE 23 GLU 24 ILE 25 LYS 26 GLY 27 THR 28 LEU 29 GLN 30 SER 31 VAL 32 ASP 33 GLN 34 PHE 35 LEU 36 ASN 37 LEU 38 LYS 39 LEU 40 ASP 41 ASN 42 ILE 43 SER 44 CYS 45 THR 46 ASP 47 GLU 48 LYS 49 LYS 50 TYR 51 PRO 52 HIS 53 LEU 54 GLY 55 SER 56 VAL 57 ARG 58 ASN 59 ILE 60 PHE 61 ILE 62 ARG 63 GLY 64 SER 65 THR 66 VAL 67 ARG 68 TYR 69 VAL 70 TYR 71 LEU 72 ASN 73 LYS 74 ASN 75 MET 76 VAL 77 ASP 78 THR 79 ASN 80 LEU 81 LEU 82 GLN 83 ASP 84 ALA 85 THR 86 ARG 87 ARG 88 GLU 89 VAL 90 MET 91 THR 92 GLU 93 ARG 94
Unit 3	MET 1 GLU 2 THR 3 PRO 4 LEU 5 ASP 6 LEU 7 LEU 8 LYS 9 LEU 10 ASN 11 LEU 12 ASP 13 GLU 14 ARG 15 VAL 16 TYR 17 ILE 18 LYS 19 LEU 20 ARG 21 GLY 22 ALA 23 ARG 24 THR 25 LEU 26 VAL 27 GLY 28 THR 29 LEU 30 GLN 31 ALA 32 PHE 33 ASP 34 SER 35 HIS 36 CYS 37 ASN 38 ILE 39 VAL 40 LEU 41 SER 42 ASP 43 ALA 44 VAL 45 GLU 46 THR 47 ILE 48 TYR 49 GLN 50 LEU 51 ASN 52 ASN 53 GLU 54 GLU 55 LEU 56 SER 57 GLU 58 SER 59 GLU 60 ARG 61 ARG 62 CYS 63 GLU 64 MET 65 VAL 66 PHE 67 ILE 68 ARG 69 GLY 70 ASP 71 THR 72 VAL 73 THR 74 LEU 75 ILE 76 SER 77 THR 78 PRO 79
Unit 4	LEU 2 PRO 3 LEU 4 TYR 5 LEU 6 LEU 7 THR 8 ASN 9 ALA 10 LYS 11 GLY 12 GLN 13 GLN 14 MET 15 GLN 16 ILE 17 GLU 18 LEU 19 LYS 20 ASN 21 GLY 22 GLU 23 ILE 24 ILE 25 GLN 26 GLY 27 ILE 28 LEU 29 THR 30 ASN 31 VAL 32 ASP 33 ASN 34 TRP 35 MET 36 ASN 37 LEU 38 THR 39 LEU 40 SER 41 ASN 42 VAL 43 THR 44 GLU 45 TYR 46 SER 47 GLU 48 GLU 49 SER 50 ALA 51 ILE 52 ALA 63 VAL 64 LYS 65 LEU 66 ASN 67 GLU 68 ILE 69 TYR 70 ILE 71 ARG 72 GLY 73 THR 74 PHE 75 ILE 76 LYS 77 PHE 78 ILE 79 LYS 80 LEU 81 GLN 82 ASP 83 ASN 84 ILE 85 ILE 86 ASP 87 LYS 88 VAL 89 LYS 90 GLN 91 GLN 92
Unit 5	GLU 5 ILE 6 LEU 7 PRO 8 LEU 9 GLU 10 VAL 11 ILE 12 ASP 13 LYS 14 THR 15 ILE 16 ASN 17 GLN 18 LYS 19 VAL 20 LEU 21 ILE 22 VAL 23 LEU 24 GLN 25 SER 26 ASN 27 ARG 28 GLU 29 PHE 30 GLU 31 GLY 32 THR 33 LEU 34 VAL 35 GLY 36 PHE 37 ASP 38 ASP 39 PHE 40 VAL 41 ASN 42 VAL 43 ILE 44 LEU 45 GLU 46 ASP 47 ALA 48 VAL 49 GLU 50 TRP 51 LEU 52 ILE 53 ASP 54 PRO 55 GLU 56 ASP 57 GLU 58 SER 59 ARG 60 ASN 61 GLU 62 LYS 63 VAL 64 MET 65 GLN 66 HIS 67 HIS 68 GLY 69 ARG 70 MET 71 LEU 72 LEU 73 SER 74 GLY 75 ASN 76 ASN 77 ILE 78 ALA 79 ILE 80 LEU 81 VAL 82 PRO 83 GLY 84 GLY 85 LYS 86 LYS 87
Unit 6	SER 10 VAL 11 THR 12 THR 13 GLU 14 PHE 15 LEU 16 SER 17 ASP 18 ILE 19 ILE 20 GLY 21 LYS 22 THR 23 VAL 24 ASN 25 VAL 26 LYS 27 LEU 28 ALA 29 SER 30 GLY 31 LEU 32 LEU 33 TYR 34 SER 35 GLY 36 ARG 37 LEU 38 GLU 39 SER 40 ILE 41 ASP 42 GLY 43 PHE 44 MET 45 ASN 46 VAL 47 ALA 48 LEU 49 SER 50 SER 51 ALA 52 THR 53 GLU 54 HIS 55 TYR 56 GLU 57 SER 58 ASN 59 ASN 60 ASN 61 LYS 62 LEU 63 LEU 64 ASN 65 LYS 66 PHE 67 ASN 68 SER 69 ASP 70 VAL 71 PHE 72 LEU 73 ARG 74 GLY 75 THR 76 GLN 77 VAL 78 MET 79 TYR 80 ILE 81 SER 82 GLU 83 GLN 84 LYS 85 ILE 86
Unit 7	ALA 26 ILE 27 LEU 28 ASP 29 LEU 30 ALA 31 LYS 32 TYR 33 LYS 34 ASP 35 SER 36 LYS 37 ILE 38 ARG 39 VAL 40 LYS 41 LEU 42 MET 43 GLY 44 GLY 45 LYS 46 LEU 47 VAL 48 ILE 49 GLY 50 VAL 51 LEU 52 LYS 53 GLY 54 TYR 55 ASP 56 GLN 57 LEU 58 MET 59 ASN 60 LEU 61 VAL 62 LEU 63 ASP 64 ASP 65 THR 66 VAL 67 GLU 68 TYR 69 MET 70 SER 71 ASN 72 ARG 87 LYS 88 LEU 89 GLY 90 LEU 91 THR 92 VAL 93 ILE 94 ARG 95 GLY 96 THR 97 ILE 98 LEU 99 VAL 100 SER 101 LEU 102 SER 103 SER 104 ALA 105 GLU 106 GLY 107 SER 108
Unit 8	LYS 471 SER 472 GLY 473 GLY 474 LYS 475 LYS 476 PHE 477 ILE 478 LEU 479 GLU 480 LEU 481 ILE 482 GLU 483 THR 484 VAL 485 TYR 486 GLU 487 GLU 488 ILE 489 LEU 490 ASP 491 LEU 492 GLU 493 ALA 494 ASN 495 LEU 496 ARG 497 ASN 498 GLY 499 GLN 500 GLN 501 THR 502 ASP 503 SER 504 THR 505 ALA 506 MET 507 TRP 508 GLU 509 ALA 510 LEU 511 HIS 512 ILE 513 ASP 514 ASP 515 SER 516 SER 517 TYR 518 ASP 519 VAL 520 ASN 521 PRO 522 PHE 523 ILE 524 SER 525 MET 526 LEU 527 SER 528 PHE 529 ASP 530 LYS 531 GLY 532 ILE 533 LYS 534 ILE 535 MET 536 PRO 537 ARG 538 ILE 539 PHE 540 ASN 541 PHE 542 LEU 543 ASP 544 LYS 545 GLN 546 GLN 547 LYS 548 LEU 549 LYS 550 ILE 551 LEU 552 GLN 553 LYS 554 ILE 555 PHE 556 ASN 557 GLU 558 LEU 559 SER 560 HIS 561 LEU 562 GLN 563 ILE 564 ILE 565 ILE 566 LEU 567 SER 568 SER 569 TYR 570 LYS 571 THR 572 THR 573 PRO 574 LYS 575 PRO 576 THR 577 LEU 578 THR 579 GLN 580 LEU 581 LYS 582 LYS 583 VAL 584 ASP 585 LEU 586 PHE 587 GLN 588 MET 589 ILE 590 ILE 591 LEU 592 LYS 593 ILE 594 ILE 595 VAL 596 SER 597 PHE 598 LEU 599 SER 600 ASN 601 ASN 602 SER 603 ASN 604 PHE 605 ILE 606 GLU 607 ILE 608 MET 609 GLY 610 LEU 611 LEU 612 LEU 613 GLN 614 LEU 615 ILE 616 ARG 617 ASN 618 ASN 619 ASN 620 VAL 621 SER 622 PHE 623 LEU 624 THR 625 THR 626 SER 627 LYS 628 ILE 629 GLY 630 LEU 631 ASN 632 LEU 633 ILE 634 THR 635 ILE 636 LEU 637 ILE 638 SER 639 ARG 640 ALA 641 ALA 642 LEU 643 ILE 644 LYS 645 GLN 646 ASP 647 SER 648 SER 656 PRO 657 GLU 658 ILE 659 SER 660 THR 661 TRP 662 ASN 663 GLU 664 ILE 665 TYR 666 ASP 667 LYS 668 LEU 669 PHE 670 THR 671 SER 672 LEU 673 GLU 674 SER 675 LYS 676 ILE 677 GLN 678 LEU 679 ILE 680 PHE 681 PRO 682 PRO 683 ARG 684 GLU 685 TYR 686 ASN 687 ASP 688 HIS 689 ILE 690 MET 691 ARG 692 LEU 693 GLN 694 ASN 695 MET 699 ASP 700 GLU 701 ALA 702 TYR 703 ILE 704 TRP 705 GLN 706 PHE 707 LEU 708 ALA 709 SER 710 LEU 711 ALA 712 LEU 713 LYS 716 LEU 717 ASN 718 HIS 719 GLN 720 ARG 721 ILE 722 ILE 723 ILE 724 ASP 725 GLU 726 VAL 727 ARG 728 ASP 729 GLU 730 ILE 731 PHE 732 ALA 733 THR 734 ILE 735 ASN 736 GLU 737 ALA 738 GLU 739 THR 740 LEU 741 GLN 742 ILE 765 ILE 766 TYR 767 ASN 768 LYS 769 GLU 770 LYS 771 LEU 772 TYR 773 GLN 774 ASP 775 LEU 776 ASN 777 LEU 778 PHE 779 LEU 780 ASN 781 VAL 782 MET 783

Ligands

Unit 9	CO 1080
Unit 10	CO 1080