4C5M - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF THE PYRIDOXAL KINASE FROM STAPHYLOCOCCUS AUREUS COMPLEX WITH AMP-PCP
• Keywords: TRANSFERASE, RIBOKINASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4C5M	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PHOSPHOMETHYLPYRIMIDINE KINASE	A	273	2060	0
2	Protein	PHOSPHOMETHYLPYRIMIDINE KINASE	B	276	2086	0
3	Protein	PHOSPHOMETHYLPYRIMIDINE KINASE	C	273	2062	0
4	Protein	PHOSPHOMETHYLPYRIMIDINE KINASE	D	273	2055	0
5	Ligand	PHOSPHOMETHYLPYRIMIDINE KINASE	A	5	0	51
6	Ligand	PHOSPHOMETHYLPYRIMIDINE KINASE	B	5	0	51
7	Ligand	PHOSPHOMETHYLPYRIMIDINE KINASE	C	5	0	51
8	Ligand	PHOSPHOMETHYLPYRIMIDINE KINASE	D	6	0	56
9	Water			978	0	978
total				2094	8263	1187

Proteins

Unit 1	GLY 1 ALA 2 LEU 3 LYS 4 LYS 5 VAL 6 LEU 7 THR 8 ILE 9 ALA 10 GLY 11 SER 12 ASP 13 THR 14 SER 15 ALA 16 GLY 17 ALA 18 GLY 19 MET 20 GLN 21 ALA 22 ASP 23 LEU 24 LYS 25 THR 26 PHE 27 GLN 28 GLU 29 LEU 30 ASP 31 THR 32 TYR 33 GLY 34 MET 35 VAL 36 ALA 37 LEU 38 THR 39 ALA 40 ILE 41 VAL 42 THR 43 MET 44 ASP 45 LYS 46 ASP 47 THR 48 TRP 49 SER 50 HIS 51 ASP 52 VAL 53 THR 54 PRO 55 LEU 56 PRO 57 MET 58 ASP 59 VAL 60 PHE 61 GLU 62 LYS 63 GLN 64 LEU 65 GLU 66 THR 67 ALA 68 LEU 69 SER 70 ILE 71 GLY 72 PRO 73 ASP 74 ALA 75 ILE 76 LYS 77 THR 78 GLY 79 MET 80 LEU 81 GLY 82 THR 83 GLU 84 GLU 85 ILE 86 ILE 87 LYS 88 ARG 89 ALA 90 GLY 91 GLU 92 VAL 93 TYR 94 GLU 95 ALA 96 SER 97 ASN 98 ALA 99 GLN 100 TYR 101 PHE 102 VAL 103 VAL 104 ASP 105 PRO 106 VAL 107 MET 108 VAL 109 CYS 110 LYS 111 GLU 115 VAL 116 LEU 117 ASN 118 PRO 119 GLY 120 ASN 121 THR 122 GLU 123 ALA 124 MET 125 ILE 126 LYS 127 TYR 128 LEU 129 LEU 130 PRO 131 LYS 132 ALA 133 THR 134 VAL 135 VAL 136 THR 137 PRO 138 ASN 139 LEU 140 PHE 141 GLU 142 ALA 143 GLY 144 GLN 145 LEU 146 SER 147 GLY 148 LEU 149 GLY 150 LYS 151 LEU 152 ASN 153 SER 154 ILE 155 GLU 156 ASP 157 MET 158 LYS 159 LYS 160 ALA 161 ALA 162 THR 163 ILE 164 ILE 165 PHE 166 ASP 167 LYS 168 GLY 169 ALA 170 GLN 171 HIS 172 VAL 173 ILE 174 ILE 175 LYS 176 GLY 177 GLY 178 LYS 179 ALA 180 LEU 181 ASP 182 GLN 183 ASP 184 LYS 185 SER 186 TYR 187 ASP 188 LEU 189 TYR 190 TYR 191 ASP 192 GLY 193 GLN 194 THR 195 PHE 196 TYR 197 GLN 198 LEU 199 THR 200 THR 201 ASP 202 MET 203 PHE 204 GLN 205 GLN 206 SER 207 TYR 208 ASN 209 HIS 210 GLY 211 ALA 212 GLY 213 CYS 214 THR 215 PHE 216 ALA 217 ALA 218 ALA 219 THR 220 THR 221 ALA 222 TYR 223 LEU 224 ALA 225 ASN 226 GLY 227 LYS 228 SER 229 PRO 230 LYS 231 GLU 232 ALA 233 VAL 234 ILE 235 SER 236 ALA 237 LYS 238 ALA 239 PHE 240 VAL 241 ALA 242 SER 243 ALA 244 ILE 245 LYS 246 ASN 247 GLY 248 TRP 249 LYS 250 MET 251 ASN 252 ASP 253 PHE 254 VAL 255 GLY 256 PRO 257 VAL 258 ASP 259 HIS 260 GLY 261 ALA 262 TYR 263 ASN 264 ARG 265 ILE 266 GLU 267 HIS 268 ILE 269 ASP 270 VAL 271 GLU 272 VAL 273 THR 274 GLU 275 VAL 276
Unit 2	GLY 1 ALA 2 LEU 3 LYS 4 LYS 5 VAL 6 LEU 7 THR 8 ILE 9 ALA 10 GLY 11 SER 12 ASP 13 THR 14 SER 15 ALA 16 GLY 17 ALA 18 GLY 19 MET 20 GLN 21 ALA 22 ASP 23 LEU 24 LYS 25 THR 26 PHE 27 GLN 28 GLU 29 LEU 30 ASP 31 THR 32 TYR 33 GLY 34 MET 35 VAL 36 ALA 37 LEU 38 THR 39 ALA 40 ILE 41 VAL 42 THR 43 MET 44 ASP 45 LYS 46 ASP 47 THR 48 TRP 49 SER 50 HIS 51 ASP 52 VAL 53 THR 54 PRO 55 LEU 56 PRO 57 MET 58 ASP 59 VAL 60 PHE 61 GLU 62 LYS 63 GLN 64 LEU 65 GLU 66 THR 67 ALA 68 LEU 69 SER 70 ILE 71 GLY 72 PRO 73 ASP 74 ALA 75 ILE 76 LYS 77 THR 78 GLY 79 MET 80 LEU 81 GLY 82 THR 83 GLU 84 GLU 85 ILE 86 ILE 87 LYS 88 ARG 89 ALA 90 GLY 91 GLU 92 VAL 93 TYR 94 GLU 95 ALA 96 SER 97 ASN 98 ALA 99 GLN 100 TYR 101 PHE 102 VAL 103 VAL 104 ASP 105 PRO 106 VAL 107 MET 108 VAL 109 CYS 110 LYS 111 GLY 112 GLU 113 ASP 114 GLU 115 VAL 116 LEU 117 ASN 118 PRO 119 GLY 120 ASN 121 THR 122 GLU 123 ALA 124 MET 125 ILE 126 LYS 127 TYR 128 LEU 129 LEU 130 PRO 131 LYS 132 ALA 133 THR 134 VAL 135 VAL 136 THR 137 PRO 138 ASN 139 LEU 140 PHE 141 GLU 142 ALA 143 GLY 144 GLN 145 LEU 146 SER 147 GLY 148 LEU 149 GLY 150 LYS 151 LEU 152 ASN 153 SER 154 ILE 155 GLU 156 ASP 157 MET 158 LYS 159 LYS 160 ALA 161 ALA 162 THR 163 ILE 164 ILE 165 PHE 166 ASP 167 LYS 168 GLY 169 ALA 170 GLN 171 HIS 172 VAL 173 ILE 174 ILE 175 LYS 176 GLY 177 GLY 178 LYS 179 ALA 180 LEU 181 ASP 182 GLN 183 ASP 184 LYS 185 SER 186 TYR 187 ASP 188 LEU 189 TYR 190 TYR 191 ASP 192 GLY 193 GLN 194 THR 195 PHE 196 TYR 197 GLN 198 LEU 199 THR 200 THR 201 ASP 202 MET 203 PHE 204 GLN 205 GLN 206 SER 207 TYR 208 ASN 209 HIS 210 GLY 211 ALA 212 GLY 213 CYS 214 THR 215 PHE 216 ALA 217 ALA 218 ALA 219 THR 220 THR 221 ALA 222 TYR 223 LEU 224 ALA 225 ASN 226 GLY 227 LYS 228 SER 229 PRO 230 LYS 231 GLU 232 ALA 233 VAL 234 ILE 235 SER 236 ALA 237 LYS 238 ALA 239 PHE 240 VAL 241 ALA 242 SER 243 ALA 244 ILE 245 LYS 246 ASN 247 GLY 248 TRP 249 LYS 250 MET 251 ASN 252 ASP 253 PHE 254 VAL 255 GLY 256 PRO 257 VAL 258 ASP 259 HIS 260 GLY 261 ALA 262 TYR 263 ASN 264 ARG 265 ILE 266 GLU 267 HIS 268 ILE 269 ASP 270 VAL 271 GLU 272 VAL 273 THR 274 GLU 275 VAL 276
Unit 3	GLY 1 ALA 2 LEU 3 LYS 4 LYS 5 VAL 6 LEU 7 THR 8 ILE 9 ALA 10 GLY 11 SER 12 ASP 13 THR 14 SER 15 ALA 16 GLY 17 ALA 18 GLY 19 MET 20 GLN 21 ALA 22 ASP 23 LEU 24 LYS 25 THR 26 PHE 27 GLN 28 GLU 29 LEU 30 ASP 31 THR 32 TYR 33 GLY 34 MET 35 VAL 36 ALA 37 LEU 38 THR 39 ALA 40 ILE 41 VAL 42 THR 43 MET 44 ASP 45 LYS 46 ASP 47 THR 48 TRP 49 SER 50 HIS 51 ASP 52 VAL 53 THR 54 PRO 55 LEU 56 PRO 57 MET 58 ASP 59 VAL 60 PHE 61 GLU 62 LYS 63 GLN 64 LEU 65 GLU 66 THR 67 ALA 68 LEU 69 SER 70 ILE 71 GLY 72 PRO 73 ASP 74 ALA 75 ILE 76 LYS 77 THR 78 GLY 79 MET 80 LEU 81 GLY 82 THR 83 GLU 84 GLU 85 ILE 86 ILE 87 LYS 88 ARG 89 ALA 90 GLY 91 GLU 92 VAL 93 TYR 94 GLU 95 ALA 96 SER 97 ASN 98 ALA 99 GLN 100 TYR 101 PHE 102 VAL 103 VAL 104 ASP 105 PRO 106 VAL 107 MET 108 VAL 109 CYS 110 ASP 114 GLU 115 VAL 116 LEU 117 ASN 118 PRO 119 GLY 120 ASN 121 THR 122 GLU 123 ALA 124 MET 125 ILE 126 LYS 127 TYR 128 LEU 129 LEU 130 PRO 131 LYS 132 ALA 133 THR 134 VAL 135 VAL 136 THR 137 PRO 138 ASN 139 LEU 140 PHE 141 GLU 142 ALA 143 GLY 144 GLN 145 LEU 146 SER 147 GLY 148 LEU 149 GLY 150 LYS 151 LEU 152 ASN 153 SER 154 ILE 155 GLU 156 ASP 157 MET 158 LYS 159 LYS 160 ALA 161 ALA 162 THR 163 ILE 164 ILE 165 PHE 166 ASP 167 LYS 168 GLY 169 ALA 170 GLN 171 HIS 172 VAL 173 ILE 174 ILE 175 LYS 176 GLY 177 GLY 178 LYS 179 ALA 180 LEU 181 ASP 182 GLN 183 ASP 184 LYS 185 SER 186 TYR 187 ASP 188 LEU 189 TYR 190 TYR 191 ASP 192 GLY 193 GLN 194 THR 195 PHE 196 TYR 197 GLN 198 LEU 199 THR 200 THR 201 ASP 202 MET 203 PHE 204 GLN 205 GLN 206 SER 207 TYR 208 ASN 209 HIS 210 GLY 211 ALA 212 GLY 213 CYS 214 THR 215 PHE 216 ALA 217 ALA 218 ALA 219 THR 220 THR 221 ALA 222 TYR 223 LEU 224 ALA 225 ASN 226 GLY 227 LYS 228 SER 229 PRO 230 LYS 231 GLU 232 ALA 233 VAL 234 ILE 235 SER 236 ALA 237 LYS 238 ALA 239 PHE 240 VAL 241 ALA 242 SER 243 ALA 244 ILE 245 LYS 246 ASN 247 GLY 248 TRP 249 LYS 250 MET 251 ASN 252 ASP 253 PHE 254 VAL 255 GLY 256 PRO 257 VAL 258 ASP 259 HIS 260 GLY 261 ALA 262 TYR 263 ASN 264 ARG 265 ILE 266 GLU 267 HIS 268 ILE 269 ASP 270 VAL 271 GLU 272 VAL 273 THR 274 GLU 275 VAL 276
Unit 4	GLY 1 ALA 2 LEU 3 LYS 4 LYS 5 VAL 6 LEU 7 THR 8 ILE 9 ALA 10 GLY 11 SER 12 ASP 13 THR 14 SER 15 ALA 16 GLY 17 ALA 18 GLY 19 MET 20 GLN 21 ALA 22 ASP 23 LEU 24 LYS 25 THR 26 PHE 27 GLN 28 GLU 29 LEU 30 ASP 31 THR 32 TYR 33 GLY 34 MET 35 VAL 36 ALA 37 LEU 38 THR 39 ALA 40 ILE 41 VAL 42 THR 43 MET 44 ASP 45 LYS 46 ASP 47 THR 48 TRP 49 SER 50 HIS 51 ASP 52 VAL 53 THR 54 PRO 55 LEU 56 PRO 57 MET 58 ASP 59 VAL 60 PHE 61 GLU 62 LYS 63 GLN 64 LEU 65 GLU 66 THR 67 ALA 68 LEU 69 SER 70 ILE 71 GLY 72 PRO 73 ASP 74 ALA 75 ILE 76 LYS 77 THR 78 GLY 79 MET 80 LEU 81 GLY 82 THR 83 GLU 84 GLU 85 ILE 86 ILE 87 LYS 88 ARG 89 ALA 90 GLY 91 GLU 92 VAL 93 TYR 94 GLU 95 ALA 96 SER 97 ASN 98 ALA 99 GLN 100 TYR 101 PHE 102 VAL 103 VAL 104 ASP 105 PRO 106 VAL 107 MET 108 VAL 109 CYS 110 LYS 111 GLU 115 VAL 116 LEU 117 ASN 118 PRO 119 GLY 120 ASN 121 THR 122 GLU 123 ALA 124 MET 125 ILE 126 LYS 127 TYR 128 LEU 129 LEU 130 PRO 131 LYS 132 ALA 133 THR 134 VAL 135 VAL 136 THR 137 PRO 138 ASN 139 LEU 140 PHE 141 GLU 142 ALA 143 GLY 144 GLN 145 LEU 146 SER 147 GLY 148 LEU 149 GLY 150 LYS 151 LEU 152 ASN 153 SER 154 ILE 155 GLU 156 ASP 157 MET 158 LYS 159 LYS 160 ALA 161 ALA 162 THR 163 ILE 164 ILE 165 PHE 166 ASP 167 LYS 168 GLY 169 ALA 170 GLN 171 HIS 172 VAL 173 ILE 174 ILE 175 LYS 176 GLY 177 GLY 178 LYS 179 ALA 180 LEU 181 ASP 182 GLN 183 ASP 184 LYS 185 SER 186 TYR 187 ASP 188 LEU 189 TYR 190 TYR 191 ASP 192 GLY 193 GLN 194 THR 195 PHE 196 TYR 197 GLN 198 LEU 199 THR 200 THR 201 ASP 202 MET 203 PHE 204 GLN 205 GLN 206 SER 207 TYR 208 ASN 209 HIS 210 GLY 211 ALA 212 GLY 213 CYS 214 THR 215 PHE 216 ALA 217 ALA 218 ALA 219 THR 220 THR 221 ALA 222 TYR 223 LEU 224 ALA 225 ASN 226 GLY 227 LYS 228 SER 229 PRO 230 LYS 231 GLU 232 ALA 233 VAL 234 ILE 235 SER 236 ALA 237 LYS 238 ALA 239 PHE 240 VAL 241 ALA 242 SER 243 ALA 244 ILE 245 LYS 246 ASN 247 GLY 248 TRP 249 LYS 250 MET 251 ASN 252 ASP 253 PHE 254 VAL 255 GLY 256 PRO 257 VAL 258 ASP 259 HIS 260 GLY 261 ALA 262 TYR 263 ASN 264 ARG 265 ILE 266 GLU 267 HIS 268 ILE 269 ASP 270 VAL 271 GLU 272 VAL 273 THR 274 GLU 275 VAL 276

Ligands

Unit 5	ACP 500 SO4 1277 SO4 1278 SO4 1279 SO4 1280
Unit 6	ACP 500 SO4 1277 SO4 1278 SO4 1279 SO4 1280
Unit 7	ACP 500 SO4 1277 SO4 1278 SO4 1279 SO4 1280
Unit 8	ACP 500 SO4 1277 SO4 1278 SO4 1279 SO4 1280 SO4 1281